Wall clock time and date at job start Sun Mar 29 2020 22:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31360 * 1 3 3 Si 1.86806 * 119.99931 * 2 1 4 4 H 1.48495 * 109.47375 * 269.99508 * 3 2 1 5 5 H 1.48495 * 109.47157 * 29.99914 * 3 2 1 6 6 H 1.48504 * 109.46751 * 149.99322 * 3 2 1 7 7 C 1.39058 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00385 * 187.99069 * 7 2 1 9 9 N 1.36766 * 119.99694 * 7.99695 * 7 2 1 10 10 C 1.34768 * 119.99890 * 190.18594 * 9 7 2 11 11 O 1.21846 * 120.00218 * 355.11579 * 10 9 7 12 12 C 1.41319 * 120.00162 * 174.83455 * 10 9 7 13 13 C 1.35764 * 120.00180 * 184.37524 * 12 10 9 14 14 C 1.41599 * 119.99809 * 180.02562 * 13 12 10 15 15 C 1.38366 * 126.26092 * 179.69181 * 14 13 12 16 16 C 1.39766 * 107.07326 * 179.90386 * 15 14 13 17 17 C 1.35520 * 107.92001 * 0.36333 * 16 15 14 18 18 N 1.35781 * 108.91952 * 359.76981 * 17 16 15 19 19 H 0.96999 * 125.69815 * 179.97438 * 18 17 16 20 20 C 1.46506 * 120.00036 * 10.18668 * 9 7 2 21 21 C 1.52996 * 117.49974 * 133.04700 * 20 9 7 22 22 C 1.52998 * 60.00064 * 252.51330 * 21 20 9 23 23 H 0.97008 * 120.00012 * 0.02562 * 1 2 3 24 24 H 1.08005 * 119.99762 * 4.37436 * 12 10 9 25 25 H 1.07999 * 120.00292 * 0.02562 * 13 12 10 26 26 H 1.07995 * 126.45999 * 0.03058 * 15 14 13 27 27 H 1.07997 * 126.03470 * 180.10847 * 16 15 14 28 28 H 1.08003 * 125.53947 * 179.74172 * 17 16 15 29 29 H 1.09001 * 115.54604 * 278.75531 * 20 9 7 30 30 H 1.08996 * 117.49533 * 0.02562 * 21 20 9 31 31 H 1.09000 * 117.49963 * 145.01589 * 21 20 9 32 32 H 1.09004 * 117.49739 * 252.51492 * 22 21 20 33 33 H 1.08997 * 117.52067 * 107.48266 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.4952 2.0465 -1.4000 5 1 1.4451 2.6527 0.7000 6 1 3.5451 1.4402 0.7002 7 6 2.0090 -1.2042 0.0005 8 1 3.0810 -1.2087 0.1305 9 7 1.3351 -2.3830 -0.1637 10 6 1.9682 -3.5551 0.0399 11 8 3.1621 -3.5685 0.2830 12 6 1.2463 -4.7684 -0.0226 13 6 1.8638 -5.9416 0.2696 14 6 1.1406 -7.1573 0.2064 15 6 1.6390 -8.4208 0.4701 16 6 0.5869 -9.3229 0.2897 17 6 -0.5091 -8.6168 -0.0802 18 7 -0.1860 -7.2991 -0.1346 19 1 -0.7889 -6.5779 -0.3741 20 6 -0.0750 -2.3714 -0.5610 21 6 -0.4985 -3.3126 -1.6905 22 6 -0.4154 -1.8056 -1.9412 23 1 -0.4850 0.8401 -0.0004 24 1 0.2033 -4.7623 -0.3029 25 1 2.9067 -5.9477 0.5503 26 1 2.6499 -8.6638 0.7625 27 1 0.6392 -10.3940 0.4181 28 1 -1.4812 -9.0343 -0.2971 29 1 -0.7889 -2.1978 0.2442 30 1 0.2720 -3.9407 -2.1376 31 1 -1.4911 -3.7587 -1.6284 32 1 -1.3535 -1.2601 -2.0441 33 1 0.4097 -1.4416 -2.5534 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275707334.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:39 Heat of formation + Delta-G solvation = 72.110038 kcal Electronic energy + Delta-G solvation = -17347.760747 eV Core-core repulsion = 14569.374710 eV Total energy + Delta-G solvation = -2778.386037 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.81147 -39.01658 -36.16673 -33.62056 -32.65454 -31.20297 -30.81953 -28.17734 -25.35297 -23.11323 -21.54594 -21.44581 -20.44249 -19.94326 -18.33951 -17.23776 -16.87087 -15.78691 -15.09853 -14.47269 -14.20441 -14.05693 -13.59124 -13.42982 -13.17873 -13.00573 -12.34871 -12.12191 -11.86918 -11.46023 -11.25349 -11.07840 -10.81226 -10.42243 -10.38267 -10.00399 -9.67497 -9.40605 -8.90440 -8.78008 -8.40713 -7.91906 -7.25795 -6.39177 -3.83734 1.27642 2.81464 3.13016 3.19678 3.25409 3.43120 3.45614 4.03970 4.45183 4.63626 4.79917 5.15362 5.22754 5.45712 5.53059 5.58780 5.72930 5.78813 5.86845 6.09323 6.15639 6.25209 6.32349 6.44915 6.70198 6.73463 6.88457 6.93850 7.18443 7.20518 7.31348 7.45232 7.70505 8.01277 8.42236 9.12213 9.34430 9.96415 10.58465 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.041280 B = 0.005665 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.134635 B = 4941.154248 C = 5465.820623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.031 3.969 3 Si 0.929 3.071 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.295 4.295 8 H 0.108 0.892 9 N -0.408 5.408 10 C 0.463 3.537 11 O -0.604 6.604 12 C -0.180 4.180 13 C -0.057 4.057 14 C 0.048 3.952 15 C -0.178 4.178 16 C -0.204 4.204 17 C -0.013 4.013 18 N -0.548 5.548 19 H 0.415 0.585 20 C 0.143 3.857 21 C -0.236 4.236 22 C -0.134 4.134 23 H 0.269 0.731 24 H 0.115 0.885 25 H 0.142 0.858 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.161 0.839 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.552 -9.947 -2.033 11.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.174 4.174 3 Si 0.756 3.244 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.423 4.423 8 H 0.126 0.874 9 N -0.124 5.124 10 C 0.257 3.743 11 O -0.493 6.493 12 C -0.202 4.202 13 C -0.080 4.080 14 C -0.063 4.063 15 C -0.203 4.203 16 C -0.229 4.229 17 C -0.147 4.147 18 N -0.143 5.143 19 H 0.252 0.748 20 C 0.038 3.962 21 C -0.274 4.274 22 C -0.171 4.171 23 H 0.080 0.920 24 H 0.132 0.868 25 H 0.160 0.840 26 H 0.156 0.844 27 H 0.151 0.849 28 H 0.178 0.822 29 H 0.131 0.869 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.248 -9.597 -1.950 11.111 hybrid contribution -0.247 1.252 -0.221 1.295 sum -5.495 -8.345 -2.171 10.225 Atomic orbital electron populations 1.69959 1.05881 1.27471 1.47023 1.25329 0.95638 0.99771 0.96664 0.85857 0.79498 0.80563 0.78494 1.20289 1.20816 1.19235 1.19869 0.93910 0.82285 1.46269 0.87410 1.43299 1.08115 1.05517 1.55480 1.16476 0.87890 0.83844 0.86122 1.90665 1.15109 1.87192 1.56289 1.22368 1.00246 0.93997 1.03592 1.20567 0.99781 0.88797 0.98834 1.18459 0.83853 0.95339 1.08697 1.21357 0.99558 0.91039 1.08297 1.20752 0.93284 0.99103 1.09754 1.21849 1.00370 0.83018 1.09453 1.42210 1.10378 1.08226 1.53474 0.74782 1.21069 0.84516 0.99250 0.91371 1.23742 1.01568 0.95137 1.06982 1.22718 1.02021 0.92033 1.00371 0.92044 0.86757 0.84049 0.84418 0.84905 0.82176 0.86927 0.89494 0.89468 0.89475 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.58 9.43 55.50 0.52 -21.05 16 2 C 0.03 0.78 5.18 -17.45 -0.09 0.69 16 3 Si 0.93 20.26 29.56 -169.99 -5.03 15.23 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.30 -8.11 9.44 -15.05 -0.14 -8.26 16 8 H 0.11 3.13 7.20 -52.49 -0.38 2.76 16 9 N -0.41 -10.44 2.93 -111.04 -0.33 -10.77 16 10 C 0.46 11.67 7.22 -15.09 -0.11 11.56 16 11 O -0.60 -17.25 15.71 5.06 0.08 -17.17 16 12 C -0.18 -3.61 7.69 -39.30 -0.30 -3.91 16 13 C -0.06 -1.05 9.40 -39.19 -0.37 -1.42 16 14 C 0.05 0.76 6.74 -83.90 -0.57 0.19 16 15 C -0.18 -2.58 10.86 -38.96 -0.42 -3.00 16 16 C -0.20 -2.57 10.81 -39.98 -0.43 -3.00 16 17 C -0.01 -0.16 11.90 -16.77 -0.20 -0.36 16 18 N -0.55 -7.22 5.94 -10.55 -0.06 -7.28 16 19 H 0.41 4.72 7.87 -40.82 -0.32 4.39 16 20 C 0.14 3.14 3.57 -67.93 -0.24 2.90 16 21 C -0.24 -4.16 7.82 -26.73 -0.21 -4.37 16 22 C -0.13 -2.70 8.61 -26.73 -0.23 -2.93 16 23 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 24 H 0.11 1.99 4.02 -52.48 -0.21 1.78 16 25 H 0.14 2.73 7.46 -52.49 -0.39 2.34 16 26 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.11 2.56 7.69 -51.93 -0.40 2.16 16 30 H 0.09 1.58 7.07 -51.93 -0.37 1.21 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 282.35 15.07 4.25 4.25 Total: -1.00 -30.50 282.35 -7.61 -38.11 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -3.74 Total: 10.58 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -3.31 Total: -11.90 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.14 Total: -39.10 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.08 Total: -17.17 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.50 -7.61 -38.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275707334.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.216 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds