Wall clock time and date at job start Sun Mar 29 2020 23:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47409 * 292.32193 * 3 2 1 5 5 C 1.36937 * 119.99690 * 264.04359 * 4 3 2 6 6 H 1.08008 * 119.99423 * 201.23418 * 5 4 3 7 7 C 1.38809 * 120.00149 * 21.23795 * 5 4 3 8 8 N 1.31617 * 120.00256 * 11.95263 * 7 5 4 9 9 Si 1.86797 * 119.99538 * 191.95621 * 7 5 4 10 10 H 1.48497 * 109.47704 * 84.98157 * 9 7 5 11 11 H 1.48503 * 109.46997 * 204.97896 * 9 7 5 12 12 H 1.48508 * 109.47515 * 324.97805 * 9 7 5 13 13 C 1.46494 * 119.99838 * 84.04084 * 4 3 2 14 14 C 1.50700 * 109.47122 * 270.00248 * 13 4 3 15 15 O 1.21442 * 120.00312 * 0.02562 * 14 13 4 16 16 C 1.41356 * 120.00199 * 180.02562 * 14 13 4 17 17 C 1.38432 * 126.29955 * 359.68764 * 16 14 13 18 18 C 1.39597 * 106.93633 * 179.84753 * 17 16 14 19 19 C 1.35646 * 107.89911 * 0.41569 * 18 17 16 20 20 N 1.34871 * 109.06362 * 359.74541 * 19 18 17 21 21 C 1.46500 * 125.64578 * 180.02562 * 20 19 18 22 22 H 4.40643 * 5.51388 * 179.97438 * 4 1 2 23 23 H 1.09005 * 109.47184 * 172.32154 * 3 2 1 24 24 H 1.09001 * 109.47287 * 52.32747 * 3 2 1 25 25 H 0.96995 * 119.99842 * 180.02562 * 8 7 5 26 26 H 1.09006 * 109.47028 * 30.00036 * 13 4 3 27 27 H 1.09000 * 109.47313 * 150.00146 * 13 4 3 28 28 H 1.08002 * 126.53725 * 0.02562 * 17 16 14 29 29 H 1.07991 * 126.05101 * 180.17841 * 18 17 16 30 30 H 1.08004 * 125.46470 * 179.75219 * 19 18 17 31 31 H 1.09006 * 109.46601 * 269.99116 * 21 20 19 32 32 H 1.09000 * 109.47089 * 29.99371 * 21 20 19 33 33 H 1.09002 * 109.47169 * 149.99524 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5237 1.2777 5 6 3.4785 0.3380 2.2848 6 1 4.1412 0.0110 3.0725 7 6 2.9754 1.6317 2.2934 8 7 1.9943 1.9617 1.4804 9 14 3.6908 2.9042 3.4588 10 1 4.8883 3.5258 2.8386 11 1 2.6746 3.9521 3.7319 12 1 4.0783 2.2465 4.7327 13 6 3.2553 -1.9699 1.4779 14 6 1.9643 -2.5089 2.0383 15 8 1.0336 -1.7579 2.2495 16 6 1.8367 -3.8886 2.3181 17 6 2.8061 -4.8574 2.1231 18 6 2.2556 -6.0722 2.5353 19 6 0.9881 -5.8343 2.9558 20 7 0.7220 -4.5181 2.8297 21 6 -0.5421 -3.8653 3.1794 22 1 -1.0499 0.0001 0.0002 23 1 3.0089 1.0193 -0.1373 24 1 3.0096 -0.6272 -0.8134 25 1 1.6431 2.8658 1.4862 26 1 3.4666 -2.4524 0.5235 27 1 4.0674 -2.1736 2.1757 28 1 3.8000 -4.7026 1.7300 29 1 2.7498 -7.0323 2.5184 30 1 0.3022 -6.5792 3.3314 31 1 -1.2027 -3.8649 2.3123 32 1 -1.0167 -4.4071 3.9975 33 1 -0.3474 -2.8383 3.4883 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281404399.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:52 Heat of formation + Delta-G solvation = 111.055497 kcal Electronic energy + Delta-G solvation = -17715.722016 eV Core-core repulsion = 14939.024780 eV Total energy + Delta-G solvation = -2776.697235 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.10149 -37.98981 -35.45933 -32.78578 -31.37836 -31.19928 -29.63537 -26.78802 -26.29043 -25.81335 -22.81992 -21.14637 -20.02382 -18.43965 -17.36188 -16.81714 -16.20709 -15.27873 -15.06006 -14.51505 -14.13687 -13.88165 -13.41915 -13.12401 -12.96856 -12.80654 -12.35332 -12.07582 -12.01383 -11.70605 -11.29853 -11.19776 -10.82723 -10.68497 -10.21387 -10.00793 -9.02536 -8.78345 -8.60752 -8.51285 -8.20569 -7.89007 -6.89265 -5.69248 -3.19151 1.71342 2.95214 3.09044 3.40358 3.46123 3.47665 3.85681 4.34821 4.55830 4.68103 4.92641 4.98689 5.18903 5.39849 5.49919 5.61232 5.64862 5.71205 5.86280 6.01873 6.15193 6.22521 6.30741 6.39532 6.55205 6.80909 7.08456 7.27784 7.36189 7.47592 7.60781 7.77364 8.33016 8.62230 9.17499 9.44787 9.80023 10.25942 11.32670 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027634 B = 0.007081 C = 0.006689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.015399 B = 3953.430103 C = 4184.989125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.084 4.084 3 C 0.270 3.730 4 N -0.568 5.568 5 C -0.263 4.263 6 H 0.074 0.926 7 C 0.008 3.992 8 N -0.887 5.887 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.281 1.281 13 C 0.115 3.885 14 C 0.365 3.635 15 O -0.427 6.427 16 C -0.069 4.069 17 C -0.136 4.136 18 C -0.217 4.217 19 C 0.000 4.000 20 N -0.411 5.411 21 C 0.066 3.934 22 H 0.183 0.817 23 H 0.102 0.898 24 H 0.032 0.968 25 H 0.253 0.747 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.145 0.855 29 H 0.137 0.863 30 H 0.160 0.840 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 -13.167 0.286 13.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 C -0.087 4.087 3 C 0.145 3.855 4 N -0.286 5.286 5 C -0.393 4.393 6 H 0.091 0.909 7 C -0.192 4.192 8 N -0.530 5.530 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.207 1.207 13 C -0.014 4.014 14 C 0.238 3.762 15 O -0.300 6.300 16 C -0.181 4.181 17 C -0.162 4.162 18 C -0.241 4.241 19 C -0.137 4.137 20 N -0.084 5.084 21 C -0.075 4.075 22 H 0.200 0.800 23 H 0.120 0.880 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.163 0.837 29 H 0.154 0.846 30 H 0.177 0.823 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.448 -12.323 0.477 12.417 hybrid contribution -0.350 0.486 0.939 1.114 sum -1.797 -11.837 1.417 12.057 Atomic orbital electron populations 1.23923 0.95109 1.07310 1.05774 1.24015 0.95048 0.94410 0.95262 1.17892 0.83094 0.99429 0.85104 1.44041 1.73650 0.98657 1.12233 1.19189 1.22487 0.92389 1.05193 0.90851 1.25053 0.96328 0.98959 0.98829 1.70038 1.24842 1.18575 1.39530 0.86259 0.78062 0.81402 0.80635 1.21290 1.21836 1.20687 1.21271 0.93883 0.86744 0.99503 1.22473 0.92769 0.84458 0.76453 1.90583 1.39673 1.60204 1.39588 1.20889 0.88564 0.96798 1.11825 1.21519 0.98854 0.91867 1.03912 1.20780 0.95156 0.98676 1.09490 1.21867 0.98801 0.85156 1.07855 1.44069 1.11755 1.07024 1.45520 1.22261 0.83277 1.00764 1.01221 0.80005 0.87999 0.95047 0.93574 0.90870 0.90041 0.83683 0.84562 0.82297 0.90846 0.90530 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.51 18.77 29.55 0.55 -6.95 16 2 C -0.08 -2.18 9.92 -37.12 -0.37 -2.55 16 3 C 0.27 6.59 5.44 -6.83 -0.04 6.55 16 4 N -0.57 -14.06 2.09 -177.94 -0.37 -14.43 16 5 C -0.26 -7.15 9.69 -15.06 -0.15 -7.30 16 6 H 0.07 1.94 7.85 -52.48 -0.41 1.53 16 7 C 0.01 0.22 5.07 -17.43 -0.09 0.13 16 8 N -0.89 -25.82 9.08 55.49 0.50 -25.32 16 9 Si 0.91 21.96 29.57 -169.99 -5.03 16.94 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.12 2.34 5.43 -5.20 -0.03 2.31 16 14 C 0.37 7.70 6.91 -33.12 -0.23 7.47 16 15 O -0.43 -10.61 12.58 5.42 0.07 -10.54 16 16 C -0.07 -1.23 6.70 -83.89 -0.56 -1.79 16 17 C -0.14 -2.03 10.31 -39.00 -0.40 -2.44 16 18 C -0.22 -2.85 10.81 -40.00 -0.43 -3.28 16 19 C 0.00 -0.01 11.34 -17.14 -0.19 -0.20 16 20 N -0.41 -6.51 3.15 -121.91 -0.38 -6.89 16 21 C 0.07 0.93 10.53 59.85 0.63 1.56 16 22 H 0.18 3.95 7.80 -54.10 -0.42 3.53 16 23 H 0.10 2.68 6.40 -51.93 -0.33 2.35 16 24 H 0.03 0.66 7.98 -51.93 -0.41 0.25 16 25 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.07 1.28 7.95 -51.93 -0.41 0.87 16 27 H 0.08 1.52 8.03 -51.93 -0.42 1.10 16 28 H 0.15 1.84 7.93 -52.49 -0.42 1.42 16 29 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.16 1.50 8.06 -52.48 -0.42 1.08 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.10 1.80 6.26 -51.93 -0.33 1.48 16 LS Contribution 289.63 15.07 4.36 4.36 Total: -1.00 -33.34 289.63 -6.13 -39.47 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -3.98 Total: 2.91 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.30 Total: -6.50 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.25 Total: -46.65 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.54 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.34 -6.13 -39.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281404399.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.526 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds