Wall clock time and date at job start Sun Mar 29 2020 22:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46889 * 342.93048 * 3 2 1 5 5 C 1.36941 * 120.00128 * 90.00529 * 4 3 2 6 6 H 1.07999 * 119.99442 * 35.79374 * 5 4 3 7 7 C 1.38805 * 120.00277 * 215.52430 * 5 4 3 8 8 N 1.31619 * 119.99929 * 215.56337 * 7 5 4 9 9 Si 1.86807 * 120.00005 * 35.55762 * 7 5 4 10 10 H 1.48496 * 109.46731 * 89.08623 * 9 7 5 11 11 H 1.48500 * 109.47276 * 209.08510 * 9 7 5 12 12 H 1.48503 * 109.47098 * 329.08813 * 9 7 5 13 13 C 1.46496 * 119.99998 * 270.00003 * 4 3 2 14 14 C 1.50707 * 109.47330 * 275.26247 * 13 4 3 15 15 N 1.30256 * 125.61482 * 85.33576 * 14 13 4 16 16 C 1.34474 * 108.70282 * 179.97438 * 15 14 13 17 17 C 1.34336 * 107.66796 * 359.97438 * 16 15 14 18 18 C 1.50693 * 126.44487 * 180.02562 * 17 16 15 19 19 C 1.53007 * 117.50091 * 188.75069 * 18 17 16 20 20 C 1.52997 * 117.49930 * 120.09103 * 18 17 16 21 21 O 1.33966 * 125.62364 * 265.03473 * 14 13 4 22 22 H 4.40637 * 5.51484 * 180.02562 * 4 1 2 23 23 H 1.08996 * 109.46458 * 222.93176 * 3 2 1 24 24 H 1.08994 * 109.47141 * 102.92994 * 3 2 1 25 25 H 0.97000 * 119.99464 * 180.02562 * 8 7 5 26 26 H 1.08999 * 109.47696 * 35.26693 * 13 4 3 27 27 H 1.09003 * 109.46994 * 155.27210 * 13 4 3 28 28 H 1.08001 * 126.16995 * 180.02562 * 16 15 14 29 29 H 1.09003 * 115.55215 * 334.42040 * 18 17 16 30 30 H 1.08997 * 117.49247 * 0.02562 * 19 18 17 31 31 H 1.08998 * 117.49969 * 145.01900 * 19 18 17 32 32 H 1.09000 * 117.50229 * 214.97857 * 20 18 17 33 33 H 1.09004 * 117.49911 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3195 0.4054 5 6 3.3637 -2.2846 -0.5388 6 1 3.7504 -2.0098 -1.5090 7 6 3.1038 -3.6165 -0.2470 8 7 3.8796 -4.5608 -0.7357 9 14 1.6531 -4.0689 0.8396 10 1 0.4437 -4.2550 -0.0018 11 1 1.9513 -5.3306 1.5636 12 1 1.4110 -2.9805 1.8205 13 6 3.3792 -1.6072 1.8210 14 6 4.7590 -1.1336 2.1990 15 7 5.0711 0.0758 2.5686 16 6 6.3903 0.1212 2.8257 17 6 6.8914 -1.1052 2.6036 18 6 8.3293 -1.5272 2.7632 19 6 8.7170 -2.9194 2.2606 20 6 8.6307 -2.6444 3.7640 21 8 5.8657 -1.8884 2.2159 22 1 -1.0498 -0.0005 -0.0001 23 1 3.0089 0.7532 0.7000 24 1 3.0092 0.2308 -1.0016 25 1 3.6977 -5.4916 -0.5321 26 1 2.6379 -1.0899 2.4301 27 1 3.3043 -2.6812 1.9916 28 1 6.9465 0.9873 3.1527 29 1 9.0670 -0.7314 2.6600 30 1 7.9320 -3.5298 1.8142 31 1 9.7098 -3.0395 1.8271 32 1 9.5669 -2.5840 4.3189 33 1 7.7891 -3.0740 4.3073 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281536103.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:32 Heat of formation + Delta-G solvation = 133.072199 kcal Electronic energy + Delta-G solvation = -17419.959934 eV Core-core repulsion = 14644.217414 eV Total energy + Delta-G solvation = -2775.742519 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.63926 -37.10215 -36.36198 -33.99346 -32.64061 -31.64880 -29.90081 -27.20560 -26.11442 -22.88088 -22.42001 -22.02886 -21.22422 -19.99950 -17.54077 -17.33251 -16.36799 -16.05285 -15.59640 -15.02711 -14.44374 -14.29114 -13.88587 -13.35304 -12.84571 -12.80458 -12.35187 -12.17381 -11.82864 -11.49968 -11.25920 -10.86811 -10.74099 -10.63409 -10.56135 -10.38787 -9.86141 -9.78180 -9.68619 -9.37047 -8.65424 -8.00535 -7.28837 -6.26392 -3.56151 1.98751 3.12335 3.26019 3.31942 3.40032 3.45509 3.56152 3.59050 3.97872 4.39818 4.61217 4.77649 4.88116 4.93024 5.01244 5.15301 5.32819 5.44114 5.58501 5.64123 5.79753 6.00730 6.09676 6.22650 6.24824 6.26849 6.38351 6.48373 6.64482 6.69130 6.93885 7.76033 8.16229 8.37008 8.42862 8.72700 9.48469 9.85309 10.87519 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.008098 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.042248 B = 3456.913668 C = 4266.843424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.165 4.165 3 C 0.236 3.764 4 N -0.571 5.571 5 C -0.296 4.296 6 H 0.083 0.917 7 C 0.057 3.943 8 N -0.860 5.860 9 Si 0.843 3.157 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.261 1.261 13 C 0.231 3.769 14 C 0.206 3.794 15 N -0.503 5.503 16 C -0.041 4.041 17 C -0.040 4.040 18 C -0.074 4.074 19 C -0.168 4.168 20 C -0.170 4.170 21 O -0.186 6.186 22 H 0.205 0.795 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.267 0.733 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.173 0.827 29 H 0.131 0.869 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.736 5.444 7.517 10.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.168 4.168 3 C 0.111 3.889 4 N -0.290 5.290 5 C -0.423 4.423 6 H 0.101 0.899 7 C -0.148 4.148 8 N -0.497 5.497 9 Si 0.669 3.331 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.186 1.186 13 C 0.102 3.898 14 C -0.004 4.004 15 N -0.232 5.232 16 C -0.180 4.180 17 C -0.094 4.094 18 C -0.092 4.092 19 C -0.205 4.205 20 C -0.207 4.207 21 O -0.071 6.071 22 H 0.222 0.778 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.190 0.810 29 H 0.149 0.851 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.382 5.666 7.480 10.818 hybrid contribution -0.523 -0.898 0.399 1.113 sum 4.860 4.768 7.879 10.413 Atomic orbital electron populations 1.24692 0.95769 1.03087 1.03855 1.24967 0.96012 0.97953 0.97825 1.18278 0.81834 0.88248 1.00569 1.44083 1.71634 1.11318 1.01997 1.18683 1.40748 0.85601 0.97241 0.89909 1.25408 0.96887 0.95588 0.96924 1.70087 1.33531 1.00879 1.45182 0.87432 0.86477 0.77797 0.81388 1.20931 1.21675 1.18571 1.20110 0.82936 1.00207 0.86529 1.28637 0.91184 0.84998 0.95580 1.70430 1.13607 1.20468 1.18733 1.22806 0.91169 0.97372 1.06654 1.22253 0.89616 0.91199 1.06335 1.20269 0.88539 0.93664 1.06721 1.23063 1.03483 0.97419 0.96525 1.23069 1.03236 1.01560 0.92814 1.84498 1.16579 1.40959 1.65084 0.77839 0.90411 0.90163 0.92278 0.89722 0.89775 0.81010 0.85098 0.87554 0.88096 0.88108 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.70 19.25 29.55 0.57 -4.13 16 2 C -0.17 -3.36 13.68 -37.12 -0.51 -3.87 16 3 C 0.24 4.85 6.16 -6.83 -0.04 4.81 16 4 N -0.57 -13.55 2.03 -177.95 -0.36 -13.91 16 5 C -0.30 -8.05 9.77 -15.06 -0.15 -8.20 16 6 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 7 C 0.06 1.57 4.97 -17.43 -0.09 1.49 16 8 N -0.86 -25.07 13.97 55.49 0.78 -24.29 16 9 Si 0.84 20.84 26.45 -169.99 -4.50 16.34 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.26 -6.12 5.80 56.52 0.33 -5.79 16 13 C 0.23 5.15 4.56 -5.19 -0.02 5.12 16 14 C 0.21 4.47 7.92 -12.94 -0.10 4.37 16 15 N -0.50 -10.22 11.29 -11.10 -0.13 -10.34 16 16 C -0.04 -0.72 11.80 -17.77 -0.21 -0.93 16 17 C -0.04 -0.71 6.84 -35.69 -0.24 -0.96 16 18 C -0.07 -1.00 6.25 -91.77 -0.57 -1.57 16 19 C -0.17 -2.24 10.18 -26.69 -0.27 -2.51 16 20 C -0.17 -2.01 10.24 -26.69 -0.27 -2.29 16 21 O -0.19 -4.04 10.55 5.36 0.06 -3.99 16 22 H 0.20 2.93 7.80 -54.10 -0.42 2.51 16 23 H 0.08 1.49 8.07 -51.93 -0.42 1.07 16 24 H 0.08 1.60 8.04 -51.93 -0.42 1.19 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.08 1.73 8.11 -51.93 -0.42 1.31 16 27 H 0.08 1.97 4.52 -51.93 -0.23 1.73 16 28 H 0.17 2.35 8.06 -52.49 -0.42 1.93 16 29 H 0.13 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.11 1.73 8.00 -51.93 -0.42 1.31 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 297.49 15.07 4.48 4.48 Total: -1.00 -30.98 297.49 -5.66 -36.64 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.08 Total: 3.73 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.91 Total: -8.67 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.29 Total: -48.54 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: 0.06 Total: -3.99 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.50 Total: 16.34 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.98 -5.66 -36.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281536103.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.712 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds