Wall clock time and date at job start Sun Mar 29 2020 22:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47072 * 277.85464 * 3 2 1 5 5 C 1.36974 * 120.00511 * 83.96016 * 4 3 2 6 6 H 1.08002 * 120.00244 * 160.91571 * 5 4 3 7 7 C 1.38973 * 119.99617 * 340.91273 * 5 4 3 8 8 N 1.31414 * 120.00075 * 19.43041 * 7 5 4 9 9 Si 1.86809 * 119.99773 * 199.42407 * 7 5 4 10 10 H 1.48499 * 109.46799 * 90.00214 * 9 7 5 11 11 H 1.48499 * 109.46956 * 210.00179 * 9 7 5 12 12 H 1.48499 * 109.47188 * 330.00132 * 9 7 5 13 13 C 1.34784 * 119.99711 * 263.96232 * 4 3 2 14 14 O 1.21657 * 119.99552 * 185.06330 * 13 4 3 15 15 C 1.47178 * 119.99969 * 5.06197 * 13 4 3 16 16 C 1.46714 * 127.01918 * 40.54341 * 15 13 4 17 17 C 1.34449 * 106.38780 * 180.30011 * 16 15 13 18 18 N 1.36423 * 109.08963 * 359.75393 * 17 16 15 19 19 H 0.96998 * 124.82631 * 180.02562 * 18 17 16 20 20 C 1.34705 * 110.36036 * 359.97438 * 18 17 16 21 21 C 1.50701 * 125.90061 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47555 * 265.02672 * 21 20 18 23 23 H 4.40642 * 5.51414 * 179.97438 * 4 1 2 24 24 H 1.08996 * 109.47178 * 157.85233 * 3 2 1 25 25 H 1.09002 * 109.46872 * 37.84964 * 3 2 1 26 26 H 0.97002 * 119.99851 * 179.97438 * 8 7 5 27 27 H 1.07997 * 126.80693 * 0.08862 * 16 15 13 28 28 H 1.08008 * 125.45677 * 179.72053 * 17 16 15 29 29 H 1.09004 * 109.46720 * 145.02865 * 21 20 18 30 30 H 1.09004 * 109.47253 * 25.03353 * 21 20 18 31 31 H 1.09008 * 109.46651 * 59.99928 * 22 21 20 32 32 H 1.08997 * 109.47227 * 180.02562 * 22 21 20 33 33 H 1.08995 * 109.47153 * 300.00558 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1879 1.3682 5 6 3.2456 -1.4503 1.8880 6 1 3.8751 -1.6268 2.7477 7 6 2.5485 -2.5039 1.3090 8 7 2.1010 -2.3981 0.0780 9 14 2.2476 -4.0707 2.2808 10 1 0.9654 -3.9555 3.0210 11 1 2.1795 -5.2254 1.3496 12 1 3.3586 -4.2767 3.2443 13 6 3.4743 0.8810 2.1157 14 8 3.9661 0.7214 3.2169 15 6 3.2505 2.2410 1.5996 16 6 2.0838 2.7207 0.8505 17 6 2.3130 4.0178 0.5811 18 7 3.5199 4.3761 1.1067 19 1 3.9097 5.2622 1.0454 20 6 4.0931 3.3248 1.7238 21 6 5.4285 3.3306 2.4222 22 6 6.5107 2.8414 1.4577 23 1 -1.0500 0.0002 0.0001 24 1 3.0089 0.9526 -0.3874 25 1 3.0097 -0.8107 -0.6306 26 1 1.6147 -3.1337 -0.3262 27 1 1.2148 2.1450 0.5681 28 1 1.6484 4.6714 0.0356 29 1 5.3883 2.6701 3.2884 30 1 5.6635 4.3437 2.7485 31 1 6.5508 3.5019 0.5914 32 1 7.4764 2.8451 1.9630 33 1 6.2756 1.8283 1.1314 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286118530.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:50 Heat of formation + Delta-G solvation = 79.351559 kcal Electronic energy + Delta-G solvation = -17898.759536 eV Core-core repulsion = 15120.687515 eV Total energy + Delta-G solvation = -2778.072021 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.64034 -37.98463 -35.05878 -33.21156 -32.04609 -31.17759 -30.21080 -27.77054 -26.31991 -24.74444 -22.99623 -21.28598 -20.20173 -18.01936 -17.70741 -17.15310 -16.36549 -15.45029 -14.41647 -14.21023 -13.96001 -13.83599 -13.75419 -13.30891 -12.87946 -12.60394 -12.17874 -11.89416 -11.77124 -11.58456 -11.16706 -11.02545 -10.98896 -10.57666 -10.41780 -10.25928 -9.48134 -9.06177 -8.59755 -8.39969 -8.09787 -7.77183 -7.55850 -6.20907 -3.74509 2.53297 3.05902 3.27027 3.33722 3.38063 3.61554 3.92839 4.11604 4.28776 4.38907 5.13740 5.14427 5.24817 5.36924 5.48983 5.64219 5.70230 5.84740 6.02898 6.04757 6.22812 6.36536 6.52830 6.56976 6.57279 6.74937 7.14254 7.28402 7.37802 7.49700 7.66217 7.92576 8.23921 8.61535 8.89811 9.26598 9.51602 10.10911 10.73840 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026509 B = 0.008400 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.991685 B = 3332.470341 C = 4027.316577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.088 4.088 3 C 0.220 3.780 4 N -0.438 5.438 5 C -0.308 4.308 6 H 0.104 0.896 7 C 0.036 3.964 8 N -0.870 5.870 9 Si 0.921 3.079 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.524 3.476 14 O -0.590 6.590 15 C -0.190 4.190 16 C -0.168 4.168 17 C -0.035 4.035 18 N -0.558 5.558 19 H 0.407 0.593 20 C 0.065 3.935 21 C -0.058 4.058 22 C -0.143 4.143 23 H 0.197 0.803 24 H 0.062 0.938 25 H 0.133 0.867 26 H 0.267 0.733 27 H 0.148 0.852 28 H 0.160 0.840 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.040 11.114 -2.989 11.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.090 4.090 3 C 0.097 3.903 4 N -0.155 5.155 5 C -0.435 4.435 6 H 0.122 0.878 7 C -0.167 4.167 8 N -0.509 5.509 9 Si 0.748 3.252 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.195 1.195 13 C 0.313 3.687 14 O -0.476 6.476 15 C -0.200 4.200 16 C -0.193 4.193 17 C -0.162 4.162 18 N -0.153 5.153 19 H 0.242 0.758 20 C -0.050 4.050 21 C -0.096 4.096 22 C -0.200 4.200 23 H 0.214 0.786 24 H 0.080 0.920 25 H 0.151 0.849 26 H 0.078 0.922 27 H 0.165 0.835 28 H 0.177 0.823 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.250 10.971 -2.613 11.500 hybrid contribution -0.694 -0.418 0.162 0.826 sum 1.556 10.553 -2.451 10.945 Atomic orbital electron populations 1.24265 0.95414 1.08302 1.03131 1.23433 0.94538 0.93610 0.97418 1.18845 0.83897 1.01321 0.86263 1.43512 1.55794 1.05323 1.10916 1.19641 1.26875 0.83122 1.13836 0.87805 1.25267 0.95986 0.99757 0.95669 1.69940 1.37029 1.32867 1.11077 0.86019 0.79154 0.80483 0.79589 1.20496 1.21184 1.19453 1.17149 0.83673 0.82851 0.84997 1.90572 1.49491 1.86133 1.21371 1.20735 0.96861 0.94407 1.08002 1.22454 0.99831 0.94230 1.02801 1.21536 0.89714 0.97427 1.07564 1.41402 1.17311 1.11280 1.45327 0.75823 1.20435 0.96561 0.87020 1.01025 1.20167 0.88672 1.01766 0.99011 1.21708 0.97579 1.02169 0.98584 0.78581 0.91965 0.84941 0.92189 0.83451 0.82251 0.87990 0.92108 0.93466 0.92445 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.27 18.78 29.55 0.56 -5.71 16 2 C -0.09 -2.06 9.06 -37.12 -0.34 -2.40 16 3 C 0.22 5.22 4.78 -6.83 -0.03 5.19 16 4 N -0.44 -11.63 2.60 -119.24 -0.31 -11.94 16 5 C -0.31 -8.70 9.34 -14.98 -0.14 -8.84 16 6 H 0.10 3.07 7.36 -52.49 -0.39 2.68 16 7 C 0.04 0.96 5.27 -17.46 -0.09 0.87 16 8 N -0.87 -22.94 8.47 55.50 0.47 -22.47 16 9 Si 0.92 21.39 29.60 -169.99 -5.03 16.36 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 C 0.52 13.57 7.38 -12.63 -0.09 13.48 16 14 O -0.59 -16.81 15.47 5.23 0.08 -16.73 16 15 C -0.19 -4.07 5.18 -102.99 -0.53 -4.60 16 16 C -0.17 -3.19 8.90 -37.50 -0.33 -3.52 16 17 C -0.04 -0.52 11.87 -16.85 -0.20 -0.72 16 18 N -0.56 -7.68 5.90 -8.86 -0.05 -7.73 16 19 H 0.41 3.93 8.96 -40.82 -0.37 3.56 16 20 C 0.07 1.14 6.47 -81.48 -0.53 0.61 16 21 C -0.06 -0.90 6.23 -27.88 -0.17 -1.07 16 22 C -0.14 -2.03 9.89 37.16 0.37 -1.66 16 23 H 0.20 3.45 7.80 -54.09 -0.42 3.03 16 24 H 0.06 1.35 5.87 -51.93 -0.31 1.05 16 25 H 0.13 3.34 6.08 -51.93 -0.32 3.03 16 26 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.15 2.92 5.09 -52.49 -0.27 2.65 16 28 H 0.16 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.10 1.87 6.93 -51.93 -0.36 1.51 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 283.55 15.07 4.27 4.27 Total: -1.00 -32.21 283.55 -5.78 -37.99 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -3.67 Total: 8.61 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.54 Total: -8.37 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.11 Total: -42.14 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.08 Total: -16.73 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.21 -5.78 -37.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286118530.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.346 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds