Wall clock time and date at job start Sun Mar 29 2020 22:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47072 * 277.85464 * 3 2 1 5 5 C 1.36974 * 120.00511 * 83.96016 * 4 3 2 6 6 H 1.08002 * 120.00244 * 160.91571 * 5 4 3 7 7 C 1.38973 * 119.99617 * 340.91273 * 5 4 3 8 8 N 1.31414 * 120.00075 * 19.43041 * 7 5 4 9 9 Si 1.86809 * 119.99773 * 199.42407 * 7 5 4 10 10 H 1.48499 * 109.46799 * 90.00214 * 9 7 5 11 11 H 1.48499 * 109.46956 * 210.00179 * 9 7 5 12 12 H 1.48499 * 109.47188 * 330.00132 * 9 7 5 13 13 C 1.34784 * 119.99711 * 263.96232 * 4 3 2 14 14 O 1.21657 * 119.99552 * 185.06330 * 13 4 3 15 15 C 1.47178 * 119.99969 * 5.06197 * 13 4 3 16 16 C 1.46714 * 127.01918 * 40.54341 * 15 13 4 17 17 C 1.34449 * 106.38780 * 180.30011 * 16 15 13 18 18 N 1.36423 * 109.08963 * 359.75393 * 17 16 15 19 19 H 0.96998 * 124.82631 * 180.02562 * 18 17 16 20 20 C 1.34705 * 110.36036 * 359.97438 * 18 17 16 21 21 C 1.50701 * 125.90061 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47555 * 265.02672 * 21 20 18 23 23 H 4.40642 * 5.51414 * 179.97438 * 4 1 2 24 24 H 1.08996 * 109.47178 * 157.85233 * 3 2 1 25 25 H 1.09002 * 109.46872 * 37.84964 * 3 2 1 26 26 H 0.97002 * 119.99851 * 179.97438 * 8 7 5 27 27 H 1.07997 * 126.80693 * 0.08862 * 16 15 13 28 28 H 1.08008 * 125.45677 * 179.72053 * 17 16 15 29 29 H 1.09004 * 109.46720 * 145.02865 * 21 20 18 30 30 H 1.09004 * 109.47253 * 25.03353 * 21 20 18 31 31 H 1.09008 * 109.46651 * 59.99928 * 22 21 20 32 32 H 1.08997 * 109.47227 * 180.02562 * 22 21 20 33 33 H 1.08995 * 109.47153 * 300.00558 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1879 1.3682 5 6 3.2456 -1.4503 1.8880 6 1 3.8751 -1.6268 2.7477 7 6 2.5485 -2.5039 1.3090 8 7 2.1010 -2.3981 0.0780 9 14 2.2476 -4.0707 2.2808 10 1 0.9654 -3.9555 3.0210 11 1 2.1795 -5.2254 1.3496 12 1 3.3586 -4.2767 3.2443 13 6 3.4743 0.8810 2.1157 14 8 3.9661 0.7214 3.2169 15 6 3.2505 2.2410 1.5996 16 6 2.0838 2.7207 0.8505 17 6 2.3130 4.0178 0.5811 18 7 3.5199 4.3761 1.1067 19 1 3.9097 5.2622 1.0454 20 6 4.0931 3.3248 1.7238 21 6 5.4285 3.3306 2.4222 22 6 6.5107 2.8414 1.4577 23 1 -1.0500 0.0002 0.0001 24 1 3.0089 0.9526 -0.3874 25 1 3.0097 -0.8107 -0.6306 26 1 1.6147 -3.1337 -0.3262 27 1 1.2148 2.1450 0.5681 28 1 1.6484 4.6714 0.0356 29 1 5.3883 2.6701 3.2884 30 1 5.6635 4.3437 2.7485 31 1 6.5508 3.5019 0.5914 32 1 7.4764 2.8451 1.9630 33 1 6.2756 1.8283 1.1314 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286118530.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:50 Heat of formation + Delta-G solvation = 58.626480 kcal Electronic energy + Delta-G solvation = -17899.658243 eV Core-core repulsion = 15120.687515 eV Total energy + Delta-G solvation = -2778.970728 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.00769 -39.87824 -37.03730 -34.47583 -33.95484 -33.07369 -31.67630 -29.11318 -28.21840 -26.63240 -24.36788 -22.90541 -21.53198 -19.72674 -19.60620 -18.48948 -18.19615 -17.29662 -16.22637 -15.93331 -15.71435 -15.26757 -15.19214 -14.58860 -14.44838 -14.34591 -13.97494 -13.52762 -13.16552 -13.09420 -12.97965 -12.88297 -12.45732 -12.24606 -12.12286 -11.83491 -11.37703 -10.91857 -10.48190 -10.35190 -9.80460 -9.50771 -8.93837 -8.24718 -5.87324 1.05120 1.37445 1.41842 1.51447 1.70918 2.10369 2.29072 2.39957 2.46789 2.54967 3.14380 3.45305 3.93187 3.99528 4.15672 4.34653 4.43839 4.49672 4.67191 4.78429 4.80387 4.93100 5.07699 5.22648 5.28162 5.33658 5.38321 5.47863 5.52160 5.94046 6.07137 6.23015 6.57962 6.86613 7.14301 7.20688 7.51777 8.11889 8.66868 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026509 B = 0.008400 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.991685 B = 3332.470341 C = 4027.316577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.130 4.130 3 C 0.231 3.769 4 N -0.452 5.452 5 C -0.349 4.349 6 H 0.074 0.926 7 C 0.009 3.991 8 N -0.872 5.872 9 Si 0.979 3.021 10 H -0.280 1.280 11 H -0.267 1.267 12 H -0.273 1.273 13 C 0.514 3.486 14 O -0.635 6.635 15 C -0.243 4.243 16 C -0.204 4.204 17 C 0.003 3.997 18 N -0.532 5.532 19 H 0.433 0.567 20 C 0.077 3.923 21 C -0.058 4.058 22 C -0.137 4.137 23 H 0.234 0.766 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.271 0.729 27 H 0.134 0.866 28 H 0.211 0.789 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.164 13.370 -4.124 14.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.131 4.131 3 C 0.109 3.891 4 N -0.169 5.169 5 C -0.476 4.476 6 H 0.092 0.908 7 C -0.194 4.194 8 N -0.510 5.510 9 Si 0.803 3.197 10 H -0.206 1.206 11 H -0.192 1.192 12 H -0.198 1.198 13 C 0.306 3.694 14 O -0.524 6.524 15 C -0.253 4.253 16 C -0.228 4.228 17 C -0.125 4.125 18 N -0.129 5.129 19 H 0.274 0.726 20 C -0.041 4.041 21 C -0.097 4.097 22 C -0.194 4.194 23 H 0.251 0.749 24 H 0.096 0.904 25 H 0.129 0.871 26 H 0.082 0.918 27 H 0.152 0.848 28 H 0.227 0.773 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.372 13.263 -3.799 13.864 hybrid contribution -0.433 -1.033 0.485 1.220 sum 0.939 12.230 -3.314 12.706 Atomic orbital electron populations 1.25125 0.96301 1.06307 1.01085 1.23512 0.94935 0.95408 0.99279 1.18638 0.84737 1.01141 0.84571 1.43690 1.56153 1.05024 1.11987 1.19527 1.28839 0.84977 1.14292 0.90772 1.25910 0.95127 1.01986 0.96377 1.70058 1.36142 1.33548 1.11221 0.85159 0.78464 0.77596 0.78458 1.20610 1.19207 1.19821 1.17933 0.82319 0.84659 0.84516 1.90505 1.51390 1.87242 1.23278 1.20537 0.99993 0.93116 1.11635 1.22383 0.99328 0.96263 1.04837 1.22103 0.89456 0.96153 1.04795 1.41344 1.16634 1.11556 1.43328 0.72645 1.20545 0.96622 0.86857 1.00064 1.20201 0.88191 1.03477 0.97796 1.21659 0.98087 1.00223 0.99459 0.74921 0.90450 0.87076 0.91800 0.84844 0.77284 0.91742 0.87644 0.90894 0.90417 0.95811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.24 18.78 74.32 1.40 -9.85 16 2 C -0.13 -6.11 9.06 31.12 0.28 -5.83 16 3 C 0.23 11.45 4.78 84.57 0.40 11.85 16 4 N -0.45 -25.39 2.60 -649.39 -1.69 -27.07 16 5 C -0.35 -20.95 9.34 84.07 0.79 -20.17 16 6 H 0.07 4.76 7.36 -2.91 -0.02 4.74 16 7 C 0.01 0.47 5.27 84.93 0.45 0.92 16 8 N -0.87 -46.65 8.47 21.67 0.18 -46.46 16 9 Si 0.98 44.69 29.60 68.60 2.03 46.72 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 C 0.51 28.27 7.38 86.59 0.64 28.91 16 14 O -0.64 -38.92 15.47 -4.21 -0.07 -38.99 16 15 C -0.24 -10.58 5.18 -18.81 -0.10 -10.68 16 16 C -0.20 -7.52 8.90 23.62 0.21 -7.31 16 17 C 0.00 0.08 11.87 83.11 0.99 1.07 16 18 N -0.53 -12.49 5.90 -181.96 -1.07 -13.56 16 19 H 0.43 5.95 8.96 -92.71 -0.83 5.11 16 20 C 0.08 2.60 6.47 42.02 0.27 2.87 16 21 C -0.06 -1.75 6.23 29.85 0.19 -1.56 16 22 C -0.14 -3.77 9.89 71.98 0.71 -3.06 16 23 H 0.23 7.50 7.80 -4.42 -0.03 7.47 16 24 H 0.08 3.49 5.87 -2.39 -0.01 3.48 16 25 H 0.11 5.88 6.08 -2.39 -0.01 5.86 16 26 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 27 H 0.13 5.25 5.09 -2.91 -0.01 5.23 16 28 H 0.21 3.24 8.06 -2.91 -0.02 3.22 16 29 H 0.06 2.45 6.93 -2.38 -0.02 2.44 16 30 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -75.84 283.55 5.91 -69.93 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.30 Total: 22.26 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 6.22 Total: -12.82 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -2.58 Total: -87.10 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -0.07 Total: -38.99 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -75.84 5.91 -69.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286118530.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.557 kcal (2) G-P(sol) polarization free energy of solvation -75.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds