Wall clock time and date at job start Sun Mar 29 2020 22:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99513 * 2 1 4 4 N 1.46497 * 109.47027 * 125.00213 * 3 2 1 5 5 C 1.46507 * 119.99883 * 265.22699 * 4 3 2 6 6 C 1.50696 * 109.47105 * 270.00201 * 5 4 3 7 7 H 1.08004 * 120.00536 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99843 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00099 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99755 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46797 * 90.00028 * 10 8 6 12 12 H 1.48506 * 109.46874 * 209.99870 * 10 8 6 13 13 H 1.48500 * 109.47362 * 329.99800 * 10 8 6 14 14 C 1.34775 * 120.00564 * 85.22791 * 4 3 2 15 15 O 1.21515 * 120.00267 * 174.58337 * 14 4 3 16 16 C 1.48171 * 119.99537 * 354.86051 * 14 4 3 17 17 C 1.39306 * 119.72304 * 173.37107 * 16 14 4 18 18 C 1.38587 * 119.05998 * 179.97438 * 17 16 14 19 19 C 1.38622 * 118.49158 * 0.02562 * 18 17 16 20 20 C 1.38565 * 119.34721 * 359.97438 * 19 18 17 21 21 N 1.31519 * 120.90507 * 359.74543 * 20 19 18 22 22 H 1.08009 * 119.99500 * 179.97438 * 1 2 3 23 23 H 1.08000 * 120.00221 * 0.02562 * 1 2 3 24 24 H 1.07993 * 120.00484 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.47289 * 4.99816 * 3 2 1 26 26 H 1.09007 * 109.47331 * 244.99729 * 3 2 1 27 27 H 1.08996 * 109.46838 * 30.00193 * 5 4 3 28 28 H 1.08994 * 109.47256 * 149.99710 * 5 4 3 29 29 H 0.97000 * 120.00515 * 180.02562 * 9 8 6 30 30 H 1.08004 * 120.46876 * 359.96131 * 17 16 14 31 31 H 1.08008 * 120.75417 * 179.97438 * 18 17 16 32 32 H 1.08001 * 120.32968 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.54655 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5941 1.9595 2.3935 6 6 2.9738 3.4176 2.3719 7 1 3.4642 3.8352 1.5049 8 6 2.6962 4.2185 3.4594 9 7 2.0996 3.7100 4.5153 10 14 3.1676 6.0259 3.4328 11 1 2.0454 6.8219 2.8739 12 1 3.4574 6.4822 4.8160 13 1 4.3745 6.2104 2.5876 14 6 4.2171 0.7795 1.0113 15 8 5.0238 0.8875 1.9135 16 6 4.5805 0.0456 -0.2236 17 6 5.8872 -0.4032 -0.4011 18 6 6.2119 -1.0886 -1.5610 19 6 5.2180 -1.3009 -2.5038 20 6 3.9391 -0.8261 -2.2611 21 7 3.6570 -0.1833 -1.1489 22 1 -0.5400 -0.9354 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8501 -0.9352 0.0004 25 1 1.3584 2.1317 0.0895 26 1 2.6213 1.4027 -0.9314 27 1 1.5155 1.8667 2.5198 28 1 3.1007 1.4643 3.2218 29 1 1.9039 4.2735 5.2802 30 1 6.6368 -0.2195 0.3545 31 1 7.2166 -1.4485 -1.7271 32 1 5.4381 -1.8318 -3.4182 33 1 3.1623 -0.9900 -2.9932 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292308737.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:37 Heat of formation + Delta-G solvation = 43.459873 kcal Electronic energy + Delta-G solvation = -17475.764717 eV Core-core repulsion = 14696.136315 eV Total energy + Delta-G solvation = -2779.628402 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.43965 -38.31371 -35.67755 -33.16205 -32.51266 -31.90398 -31.21409 -27.59981 -25.53873 -24.30906 -23.43168 -22.32787 -19.97760 -18.95970 -17.03035 -16.67402 -16.36720 -15.86363 -15.16423 -14.72033 -14.62626 -14.31482 -14.10066 -13.38844 -13.06898 -12.89191 -12.61810 -12.14066 -11.79923 -11.44273 -11.23140 -10.93881 -10.76223 -10.55932 -10.15669 -9.89896 -9.69007 -9.51468 -9.10364 -8.96827 -8.74194 -8.39852 -7.63177 -6.00730 -4.05234 0.82384 1.24598 2.73872 3.25793 3.33198 3.39359 3.44506 3.86633 4.15434 4.40539 4.49195 4.77403 4.94822 5.01042 5.13573 5.33040 5.42522 5.55336 5.70880 5.75949 5.99982 6.05664 6.12454 6.33994 6.45944 6.67347 7.06547 7.09802 7.23078 7.45556 7.59322 7.85016 7.96265 8.25963 8.41690 8.89552 9.05815 9.59267 11.07419 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025732 B = 0.006796 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.872898 B = 4119.038056 C = 4754.002787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.125 4.125 3 C 0.142 3.858 4 N -0.570 5.570 5 C 0.245 3.755 6 C -0.524 4.524 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.551 3.449 15 O -0.533 6.533 16 C 0.091 3.909 17 C -0.117 4.117 18 C -0.085 4.085 19 C -0.163 4.163 20 C 0.087 3.913 21 N -0.446 5.446 22 H 0.088 0.912 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.036 0.964 28 H 0.043 0.957 29 H 0.263 0.737 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 -10.033 -14.720 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.144 4.144 3 C 0.019 3.981 4 N -0.299 5.299 5 C 0.127 3.873 6 C -0.563 4.563 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.336 3.664 15 O -0.410 6.410 16 C -0.047 4.047 17 C -0.138 4.138 18 C -0.111 4.111 19 C -0.183 4.183 20 C -0.072 4.072 21 N -0.158 5.158 22 H 0.107 0.893 23 H 0.112 0.888 24 H 0.120 0.880 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.164 0.836 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.954 -9.575 -13.835 16.938 hybrid contribution 1.019 0.577 -0.223 1.192 sum 2.973 -8.997 -14.058 16.954 Atomic orbital electron populations 1.23724 0.95948 1.01178 1.03982 1.23261 0.95229 0.99285 0.96646 1.20819 0.92453 0.94549 0.90261 1.48146 1.12525 1.53672 1.15563 1.19374 0.95923 0.92594 0.79451 1.21420 1.39053 0.93908 1.01951 0.92393 1.24928 0.95099 0.98896 0.95151 1.69933 1.41816 1.36091 1.05550 0.86490 0.78824 0.84752 0.77319 1.20630 1.21090 1.19905 1.17858 0.83087 0.80078 0.85370 1.90762 1.48995 1.60689 1.40535 1.21707 0.90699 0.97520 0.94811 1.22165 0.97242 0.96273 0.98123 1.21578 0.99909 0.96495 0.93109 1.22283 0.94641 1.01021 1.00339 1.22925 0.95613 0.93956 0.94718 1.68357 1.34594 1.11386 1.01482 0.89317 0.88752 0.87953 0.90634 0.88597 0.94570 0.93906 0.92726 0.83592 0.84543 0.84832 0.82476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.09 14.32 29.01 0.42 -2.68 16 2 C -0.12 -2.04 8.55 -36.03 -0.31 -2.35 16 3 C 0.14 2.64 5.43 -5.20 -0.03 2.62 16 4 N -0.57 -12.98 2.45 -177.43 -0.43 -13.42 16 5 C 0.25 6.64 5.10 -5.19 -0.03 6.62 16 6 C -0.52 -15.24 9.39 -34.44 -0.32 -15.56 16 7 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 10 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.55 12.35 7.61 -12.18 -0.09 12.25 16 15 O -0.53 -13.78 15.98 5.35 0.09 -13.70 16 16 C 0.09 1.58 6.55 -83.01 -0.54 1.04 16 17 C -0.12 -1.71 9.63 -39.06 -0.38 -2.08 16 18 C -0.08 -0.90 10.17 -39.31 -0.40 -1.30 16 19 C -0.16 -1.54 10.11 -39.32 -0.40 -1.94 16 20 C 0.09 0.96 11.18 -17.56 -0.20 0.77 16 21 N -0.45 -6.67 4.25 -9.80 -0.04 -6.71 16 22 H 0.09 1.14 8.06 -52.48 -0.42 0.72 16 23 H 0.09 1.36 7.84 -52.49 -0.41 0.95 16 24 H 0.10 1.68 7.03 -52.49 -0.37 1.31 16 25 H 0.08 1.43 7.69 -51.93 -0.40 1.04 16 26 H 0.10 1.67 5.72 -51.93 -0.30 1.37 16 27 H 0.04 0.99 8.07 -51.93 -0.42 0.58 16 28 H 0.04 1.29 7.50 -51.93 -0.39 0.90 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.15 2.14 7.66 -52.48 -0.40 1.74 16 31 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.16 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 290.18 15.07 4.37 4.37 Total: -1.00 -33.23 290.18 -6.60 -39.83 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -3.92 Total: -0.40 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.37 Total: -0.94 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.26 Total: -46.35 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.23 -6.60 -39.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292308737.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.289 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds