Wall clock time and date at job start Sun Mar 29 2020 22:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99513 * 2 1 4 4 N 1.46497 * 109.47027 * 125.00213 * 3 2 1 5 5 C 1.46507 * 119.99883 * 265.22699 * 4 3 2 6 6 C 1.50696 * 109.47105 * 270.00201 * 5 4 3 7 7 H 1.08004 * 120.00536 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99843 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00099 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99755 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46797 * 90.00028 * 10 8 6 12 12 H 1.48506 * 109.46874 * 209.99870 * 10 8 6 13 13 H 1.48500 * 109.47362 * 329.99800 * 10 8 6 14 14 C 1.34775 * 120.00564 * 85.22791 * 4 3 2 15 15 O 1.21515 * 120.00267 * 174.58337 * 14 4 3 16 16 C 1.48171 * 119.99537 * 354.86051 * 14 4 3 17 17 C 1.39306 * 119.72304 * 173.37107 * 16 14 4 18 18 C 1.38587 * 119.05998 * 179.97438 * 17 16 14 19 19 C 1.38622 * 118.49158 * 0.02562 * 18 17 16 20 20 C 1.38565 * 119.34721 * 359.97438 * 19 18 17 21 21 N 1.31519 * 120.90507 * 359.74543 * 20 19 18 22 22 H 1.08009 * 119.99500 * 179.97438 * 1 2 3 23 23 H 1.08000 * 120.00221 * 0.02562 * 1 2 3 24 24 H 1.07993 * 120.00484 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.47289 * 4.99816 * 3 2 1 26 26 H 1.09007 * 109.47331 * 244.99729 * 3 2 1 27 27 H 1.08996 * 109.46838 * 30.00193 * 5 4 3 28 28 H 1.08994 * 109.47256 * 149.99710 * 5 4 3 29 29 H 0.97000 * 120.00515 * 180.02562 * 9 8 6 30 30 H 1.08004 * 120.46876 * 359.96131 * 17 16 14 31 31 H 1.08008 * 120.75417 * 179.97438 * 18 17 16 32 32 H 1.08001 * 120.32968 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.54655 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5941 1.9595 2.3935 6 6 2.9738 3.4176 2.3719 7 1 3.4642 3.8352 1.5049 8 6 2.6962 4.2185 3.4594 9 7 2.0996 3.7100 4.5153 10 14 3.1676 6.0259 3.4328 11 1 2.0454 6.8219 2.8739 12 1 3.4574 6.4822 4.8160 13 1 4.3745 6.2104 2.5876 14 6 4.2171 0.7795 1.0113 15 8 5.0238 0.8875 1.9135 16 6 4.5805 0.0456 -0.2236 17 6 5.8872 -0.4032 -0.4011 18 6 6.2119 -1.0886 -1.5610 19 6 5.2180 -1.3009 -2.5038 20 6 3.9391 -0.8261 -2.2611 21 7 3.6570 -0.1833 -1.1489 22 1 -0.5400 -0.9354 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8501 -0.9352 0.0004 25 1 1.3584 2.1317 0.0895 26 1 2.6213 1.4027 -0.9314 27 1 1.5155 1.8667 2.5198 28 1 3.1007 1.4643 3.2218 29 1 1.9039 4.2735 5.2802 30 1 6.6368 -0.2195 0.3545 31 1 7.2166 -1.4485 -1.7271 32 1 5.4381 -1.8318 -3.4182 33 1 3.1623 -0.9900 -2.9932 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292308737.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:36 Heat of formation + Delta-G solvation = 22.378178 kcal Electronic energy + Delta-G solvation = -17476.678887 eV Core-core repulsion = 14696.136315 eV Total energy + Delta-G solvation = -2780.542572 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.67569 -39.82530 -37.34794 -35.15988 -33.67947 -33.44238 -32.34345 -29.59374 -27.01749 -25.99997 -24.43897 -23.93055 -21.42229 -20.35592 -18.71003 -18.40270 -17.88311 -17.00430 -16.69685 -16.26618 -16.11031 -15.86214 -15.38937 -14.74770 -14.53995 -14.23800 -14.15058 -13.85525 -13.32719 -12.99595 -12.86929 -12.72668 -12.58014 -12.26024 -12.14123 -11.69906 -11.15145 -10.85644 -10.66333 -10.26327 -10.16253 -10.01788 -9.48388 -8.24247 -6.39631 -0.26410 0.33414 1.34990 1.38492 1.44042 1.49570 1.85938 2.29045 2.42335 2.94450 3.04807 3.22628 3.80697 4.03067 4.12384 4.15585 4.20890 4.34138 4.51092 4.67211 4.82627 4.93212 4.99969 5.10478 5.18247 5.19572 5.22901 5.50537 5.72054 5.74742 5.83825 6.02081 6.06323 6.59553 6.69449 6.86590 7.21504 7.36576 8.83297 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025732 B = 0.006796 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.872898 B = 4119.038056 C = 4754.002787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.139 4.139 3 C 0.146 3.854 4 N -0.580 5.580 5 C 0.263 3.737 6 C -0.545 4.545 7 H 0.050 0.950 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.971 3.029 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.274 1.274 14 C 0.542 3.458 15 O -0.588 6.588 16 C 0.056 3.944 17 C -0.128 4.128 18 C -0.077 4.077 19 C -0.133 4.133 20 C 0.084 3.916 21 N -0.462 5.462 22 H 0.114 0.886 23 H 0.095 0.905 24 H 0.103 0.897 25 H 0.063 0.937 26 H 0.110 0.890 27 H 0.024 0.976 28 H -0.002 1.002 29 H 0.269 0.731 30 H 0.131 0.869 31 H 0.175 0.825 32 H 0.184 0.816 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.570 -10.849 -18.039 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.159 4.159 3 C 0.024 3.976 4 N -0.308 5.308 5 C 0.142 3.858 6 C -0.583 4.583 7 H 0.068 0.932 8 C -0.190 4.190 9 N -0.566 5.566 10 Si 0.795 3.205 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.199 1.199 14 C 0.329 3.671 15 O -0.469 6.469 16 C -0.080 4.080 17 C -0.149 4.149 18 C -0.102 4.102 19 C -0.152 4.152 20 C -0.076 4.076 21 N -0.174 5.174 22 H 0.133 0.867 23 H 0.113 0.887 24 H 0.121 0.879 25 H 0.081 0.919 26 H 0.127 0.873 27 H 0.042 0.958 28 H 0.017 0.983 29 H 0.078 0.922 30 H 0.149 0.851 31 H 0.192 0.808 32 H 0.201 0.799 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.041 -10.402 -17.187 20.194 hybrid contribution 0.970 0.694 0.677 1.371 sum 3.011 -9.708 -16.511 19.389 Atomic orbital electron populations 1.23950 0.95340 1.02458 1.01102 1.23032 0.95635 0.97985 0.99207 1.20958 0.91819 0.95618 0.89175 1.48151 1.13852 1.53657 1.15137 1.18810 0.94368 0.91920 0.80715 1.21640 1.39546 0.94996 1.02153 0.93182 1.25875 0.94663 1.03959 0.94491 1.70050 1.42369 1.38040 1.06179 0.85372 0.78839 0.78679 0.77648 1.18635 1.20216 1.19931 1.18721 0.82046 0.79486 0.86797 1.90694 1.50386 1.62778 1.43036 1.20897 0.92482 1.00502 0.94149 1.22195 0.95754 0.97220 0.99733 1.22003 1.02154 0.94805 0.91285 1.22846 0.93057 0.98299 1.01010 1.23640 0.97700 0.92592 0.93634 1.68146 1.34368 1.12573 1.02360 0.86739 0.88651 0.87865 0.91861 0.87270 0.95752 0.98343 0.92238 0.85147 0.80755 0.79864 0.78813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.34 14.32 67.78 0.97 -4.37 16 2 C -0.14 -4.52 8.55 25.64 0.22 -4.30 16 3 C 0.15 5.59 5.43 85.63 0.46 6.05 16 4 N -0.58 -28.12 2.45 -833.55 -2.04 -30.16 16 5 C 0.26 15.28 5.10 85.63 0.44 15.72 16 6 C -0.54 -33.24 9.39 25.60 0.24 -33.00 16 7 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 8 C 0.01 0.55 5.46 84.66 0.46 1.01 16 9 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 10 Si 0.97 46.39 29.54 68.60 2.03 48.41 16 11 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 14 C 0.54 25.97 7.61 86.88 0.66 26.63 16 15 O -0.59 -33.10 15.98 -3.76 -0.06 -33.16 16 16 C 0.06 1.98 6.55 41.91 0.27 2.26 16 17 C -0.13 -3.70 9.63 22.61 0.22 -3.48 16 18 C -0.08 -1.36 10.17 22.44 0.23 -1.13 16 19 C -0.13 -1.79 10.11 22.44 0.23 -1.56 16 20 C 0.08 1.53 11.18 84.82 0.95 2.48 16 21 N -0.46 -13.25 4.25 -184.91 -0.79 -14.04 16 22 H 0.11 2.63 8.06 -2.91 -0.02 2.61 16 23 H 0.10 2.65 7.84 -2.91 -0.02 2.63 16 24 H 0.10 3.35 7.03 -2.91 -0.02 3.33 16 25 H 0.06 2.50 7.69 -2.39 -0.02 2.48 16 26 H 0.11 3.84 5.72 -2.38 -0.01 3.83 16 27 H 0.02 1.44 8.07 -2.39 -0.02 1.42 16 28 H 0.00 -0.10 7.50 -2.39 -0.02 -0.12 16 29 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.13 4.06 7.66 -2.91 -0.02 4.04 16 31 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 33 H 0.20 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -78.74 290.18 5.87 -72.86 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.10 Total: 7.18 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 5.35 Total: 6.31 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -2.54 Total: -101.60 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.06 Total: -33.16 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -78.74 5.87 -72.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292308737.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.243 kcal (2) G-P(sol) polarization free energy of solvation -78.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds