Wall clock time and date at job start Sun Mar 29 2020 22:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 120.00482 * 2 1 4 4 N 1.46499 * 109.46724 * 126.13759 * 3 2 1 5 5 C 1.46496 * 120.00156 * 277.17505 * 4 3 2 6 6 C 1.50706 * 109.47272 * 270.00206 * 5 4 3 7 7 H 1.08006 * 119.99682 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00305 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99559 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00197 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46966 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46815 * 119.99808 * 10 8 6 13 13 H 1.48494 * 109.47158 * 240.00081 * 10 8 6 14 14 C 1.34782 * 119.99534 * 97.18297 * 4 3 2 15 15 O 1.21555 * 119.99274 * 185.54420 * 14 4 3 16 16 C 1.47831 * 120.00192 * 5.53757 * 14 4 3 17 17 C 1.40025 * 120.55821 * 131.77714 * 16 14 4 18 18 C 1.38364 * 118.28643 * 179.97438 * 17 16 14 19 19 C 1.38351 * 119.30463 * 0.28502 * 18 17 16 20 20 N 1.31929 * 121.07539 * 359.43796 * 19 18 17 21 21 C 1.31691 * 121.88309 * 0.55098 * 20 19 18 22 22 H 1.07996 * 120.00098 * 179.97438 * 1 2 3 23 23 H 1.07998 * 119.99789 * 359.97438 * 1 2 3 24 24 H 1.08005 * 119.99442 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.46759 * 6.14156 * 3 2 1 26 26 H 1.08998 * 109.47163 * 246.14370 * 3 2 1 27 27 H 1.08995 * 109.47210 * 30.00085 * 5 4 3 28 28 H 1.08997 * 109.47021 * 150.00560 * 5 4 3 29 29 H 0.97000 * 119.99485 * 179.97438 * 9 8 6 30 30 H 1.07989 * 120.85788 * 359.96004 * 17 16 14 31 31 H 1.08005 * 120.34251 * 180.02562 * 18 17 16 32 32 H 1.07999 * 119.46261 * 179.70047 * 19 18 17 33 33 H 1.08000 * 119.71643 * 179.72434 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0132 1.3205 1.1155 5 6 2.5599 1.6916 2.4582 6 6 2.7050 3.1801 2.6439 7 1 3.0954 3.7889 1.8417 8 6 2.3394 3.7649 3.8378 9 7 1.8644 3.0235 4.8148 10 14 2.5199 5.6098 4.0682 11 1 3.0741 6.2115 2.8287 12 1 1.1901 6.2052 4.3552 13 1 3.4385 5.8793 5.2034 14 6 4.3038 0.9934 0.9063 15 8 5.0692 0.9080 1.8468 16 6 4.7886 0.7383 -0.4668 17 6 5.9644 1.3411 -0.9301 18 6 6.3752 1.0691 -2.2231 19 6 5.6152 0.2233 -3.0112 20 7 4.5140 -0.3347 -2.5460 21 6 4.0823 -0.1074 -1.3228 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9354 -0.0004 25 1 1.3604 2.1306 0.1100 26 1 2.6052 1.4118 -0.9398 27 1 1.5137 1.4107 2.5791 28 1 3.1639 1.1722 3.2021 29 1 1.6075 3.4349 5.6548 30 1 6.5359 2.0014 -0.2948 31 1 7.2774 1.5158 -2.6143 32 1 5.9309 0.0131 -4.0225 33 1 3.1737 -0.5794 -0.9793 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292595998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:38 Heat of formation + Delta-G solvation = 31.128456 kcal Electronic energy + Delta-G solvation = -17414.951670 eV Core-core repulsion = 14634.788538 eV Total energy + Delta-G solvation = -2780.163132 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.46231 -38.51612 -35.85819 -33.29530 -32.45893 -32.15665 -31.32341 -27.65457 -25.75215 -24.35936 -23.48029 -22.38401 -20.18807 -18.96663 -17.25610 -16.80155 -16.50341 -16.27686 -15.42389 -14.86130 -14.60221 -14.20997 -13.75336 -13.61314 -13.21324 -12.96105 -12.79156 -12.20402 -11.86663 -11.71482 -11.31922 -11.12385 -10.89121 -10.65656 -10.26048 -9.87130 -9.77251 -9.68300 -9.29589 -9.11467 -8.87463 -8.47551 -7.79223 -6.08617 -4.13835 0.89400 1.24806 2.40716 3.24351 3.26963 3.34859 3.38829 3.73171 3.98085 4.38199 4.42305 4.79230 4.90344 4.95601 5.08635 5.20128 5.25839 5.34606 5.46473 5.53630 5.70628 5.98719 6.06294 6.13864 6.18831 6.58858 6.75700 6.86388 7.02760 7.38703 7.45922 7.87403 7.87990 8.17530 8.26893 8.79393 8.95635 9.51310 10.99588 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023277 B = 0.006997 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.601793 B = 4000.846512 C = 4706.587185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.176 4.176 3 C 0.128 3.872 4 N -0.583 5.583 5 C 0.246 3.754 6 C -0.530 4.530 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.892 5.892 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.551 3.449 15 O -0.531 6.531 16 C -0.165 4.165 17 C -0.031 4.031 18 C -0.178 4.178 19 C 0.102 3.898 20 N -0.488 5.488 21 C 0.116 3.884 22 H 0.097 0.903 23 H 0.100 0.900 24 H 0.108 0.892 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.037 0.963 28 H 0.047 0.953 29 H 0.263 0.737 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.156 0.844 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.336 -4.512 -14.443 15.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.195 4.195 3 C 0.005 3.995 4 N -0.313 5.313 5 C 0.127 3.873 6 C -0.569 4.569 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.336 3.664 15 O -0.409 6.409 16 C -0.170 4.170 17 C -0.057 4.057 18 C -0.198 4.198 19 C -0.054 4.054 20 N -0.197 5.197 21 C -0.042 4.042 22 H 0.115 0.885 23 H 0.119 0.881 24 H 0.126 0.874 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.174 0.826 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.181 -5.081 -14.256 15.291 hybrid contribution 0.526 1.595 0.765 1.845 sum 2.707 -3.486 -13.491 14.195 Atomic orbital electron populations 1.23839 0.95698 1.01980 0.99412 1.23391 0.96521 0.98661 1.00954 1.20765 0.92867 0.95656 0.90247 1.48178 1.06741 1.64707 1.11653 1.19353 0.95649 0.95709 0.76583 1.21461 1.43164 0.92475 0.99758 0.92362 1.24932 0.95001 0.98502 0.95585 1.69945 1.43135 1.35425 1.04601 0.86440 0.77739 0.85001 0.78236 1.19805 1.20894 1.20818 1.18024 0.82929 0.78245 0.87194 1.90773 1.55047 1.51912 1.43124 1.21320 0.97642 1.01271 0.96808 1.21686 0.93294 0.95619 0.95149 1.22090 1.01912 1.00889 0.94892 1.22883 0.90374 0.92364 0.99803 1.67714 1.14390 1.22769 1.14784 1.23503 0.98365 0.93816 0.88489 0.88485 0.88123 0.87404 0.89334 0.90379 0.94530 0.93535 0.92694 0.84063 0.84374 0.82650 0.81513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 14.32 29.01 0.42 -1.80 16 2 C -0.18 -2.54 8.55 -36.03 -0.31 -2.85 16 3 C 0.13 2.14 5.35 -5.19 -0.03 2.11 16 4 N -0.58 -12.40 2.45 -177.56 -0.43 -12.83 16 5 C 0.25 6.38 5.22 -5.19 -0.03 6.35 16 6 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 7 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 10 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.55 11.77 7.27 -12.33 -0.09 11.68 16 15 O -0.53 -13.55 16.58 5.32 0.09 -13.46 16 16 C -0.17 -2.79 4.98 -104.82 -0.52 -3.31 16 17 C -0.03 -0.45 9.88 -38.87 -0.38 -0.84 16 18 C -0.18 -2.01 10.10 -39.49 -0.40 -2.41 16 19 C 0.10 1.17 11.17 -17.47 -0.20 0.97 16 20 N -0.49 -6.78 10.35 -12.91 -0.13 -6.91 16 21 C 0.12 1.72 8.66 -17.13 -0.15 1.57 16 22 H 0.10 1.07 8.06 -52.49 -0.42 0.65 16 23 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 24 H 0.11 1.46 6.53 -52.48 -0.34 1.11 16 25 H 0.09 1.51 7.78 -51.93 -0.40 1.11 16 26 H 0.08 1.18 5.26 -51.93 -0.27 0.91 16 27 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 28 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.14 2.03 8.06 -52.49 -0.42 1.60 16 31 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.17 2.32 4.11 -52.49 -0.22 2.11 16 LS Contribution 289.16 15.07 4.36 4.36 Total: -1.00 -32.82 289.16 -6.20 -39.02 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -3.68 Total: 0.81 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.11 Total: -2.03 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.17 Total: -45.30 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.82 -6.20 -39.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292595998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.148 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds