Wall clock time and date at job start Sun Mar 29 2020 22:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 120.00482 * 2 1 4 4 N 1.46499 * 109.46724 * 126.13759 * 3 2 1 5 5 C 1.46496 * 120.00156 * 277.17505 * 4 3 2 6 6 C 1.50706 * 109.47272 * 270.00206 * 5 4 3 7 7 H 1.08006 * 119.99682 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00305 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99559 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00197 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46966 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46815 * 119.99808 * 10 8 6 13 13 H 1.48494 * 109.47158 * 240.00081 * 10 8 6 14 14 C 1.34782 * 119.99534 * 97.18297 * 4 3 2 15 15 O 1.21555 * 119.99274 * 185.54420 * 14 4 3 16 16 C 1.47831 * 120.00192 * 5.53757 * 14 4 3 17 17 C 1.40025 * 120.55821 * 131.77714 * 16 14 4 18 18 C 1.38364 * 118.28643 * 179.97438 * 17 16 14 19 19 C 1.38351 * 119.30463 * 0.28502 * 18 17 16 20 20 N 1.31929 * 121.07539 * 359.43796 * 19 18 17 21 21 C 1.31691 * 121.88309 * 0.55098 * 20 19 18 22 22 H 1.07996 * 120.00098 * 179.97438 * 1 2 3 23 23 H 1.07998 * 119.99789 * 359.97438 * 1 2 3 24 24 H 1.08005 * 119.99442 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.46759 * 6.14156 * 3 2 1 26 26 H 1.08998 * 109.47163 * 246.14370 * 3 2 1 27 27 H 1.08995 * 109.47210 * 30.00085 * 5 4 3 28 28 H 1.08997 * 109.47021 * 150.00560 * 5 4 3 29 29 H 0.97000 * 119.99485 * 179.97438 * 9 8 6 30 30 H 1.07989 * 120.85788 * 359.96004 * 17 16 14 31 31 H 1.08005 * 120.34251 * 180.02562 * 18 17 16 32 32 H 1.07999 * 119.46261 * 179.70047 * 19 18 17 33 33 H 1.08000 * 119.71643 * 179.72434 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0132 1.3205 1.1155 5 6 2.5599 1.6916 2.4582 6 6 2.7050 3.1801 2.6439 7 1 3.0954 3.7889 1.8417 8 6 2.3394 3.7649 3.8378 9 7 1.8644 3.0235 4.8148 10 14 2.5199 5.6098 4.0682 11 1 3.0741 6.2115 2.8287 12 1 1.1901 6.2052 4.3552 13 1 3.4385 5.8793 5.2034 14 6 4.3038 0.9934 0.9063 15 8 5.0692 0.9080 1.8468 16 6 4.7886 0.7383 -0.4668 17 6 5.9644 1.3411 -0.9301 18 6 6.3752 1.0691 -2.2231 19 6 5.6152 0.2233 -3.0112 20 7 4.5140 -0.3347 -2.5460 21 6 4.0823 -0.1074 -1.3228 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9354 -0.0004 25 1 1.3604 2.1306 0.1100 26 1 2.6052 1.4118 -0.9398 27 1 1.5137 1.4107 2.5791 28 1 3.1639 1.1722 3.2021 29 1 1.6075 3.4349 5.6548 30 1 6.5359 2.0014 -0.2948 31 1 7.2774 1.5158 -2.6143 32 1 5.9309 0.0131 -4.0225 33 1 3.1737 -0.5794 -0.9793 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292595998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:38 Heat of formation + Delta-G solvation = 9.457700 kcal Electronic energy + Delta-G solvation = -17415.891384 eV Core-core repulsion = 14634.788538 eV Total energy + Delta-G solvation = -2781.102846 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.73789 -39.98105 -37.43909 -35.20743 -33.80379 -33.51197 -32.55285 -29.55619 -27.16314 -25.98017 -24.56038 -24.04695 -21.46559 -20.39867 -18.68721 -18.54268 -18.05294 -17.52658 -17.01265 -16.32246 -16.09241 -15.86646 -14.88724 -14.84027 -14.59261 -14.34285 -14.20235 -14.04129 -13.36159 -13.13582 -12.97475 -12.89365 -12.62243 -12.29810 -12.23432 -11.69540 -11.18811 -10.93805 -10.67448 -10.46046 -10.42705 -10.05019 -9.59039 -8.25565 -6.40694 -0.21755 0.18630 1.26599 1.35700 1.37681 1.49482 1.69142 2.25846 2.39869 2.77856 3.04531 3.33928 3.56582 3.82886 3.92164 4.01032 4.08372 4.14985 4.29398 4.46353 4.68403 4.77837 4.93663 5.01121 5.02642 5.14221 5.19883 5.43843 5.60212 5.66398 5.70791 5.87698 6.01152 6.55584 6.68163 6.84402 7.15820 7.32999 8.82369 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023277 B = 0.006997 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.601793 B = 4000.846512 C = 4706.587185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.197 4.197 3 C 0.130 3.870 4 N -0.587 5.587 5 C 0.263 3.737 6 C -0.547 4.547 7 H 0.054 0.946 8 C 0.010 3.990 9 N -0.926 5.926 10 Si 0.969 3.031 11 H -0.267 1.267 12 H -0.268 1.268 13 H -0.280 1.280 14 C 0.546 3.454 15 O -0.589 6.589 16 C -0.191 4.191 17 C -0.045 4.045 18 C -0.160 4.160 19 C 0.114 3.886 20 N -0.498 5.498 21 C 0.119 3.881 22 H 0.122 0.878 23 H 0.103 0.897 24 H 0.116 0.884 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.028 0.972 28 H 0.001 0.999 29 H 0.268 0.732 30 H 0.135 0.865 31 H 0.181 0.819 32 H 0.202 0.798 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.560 -3.995 -17.272 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.216 4.216 3 C 0.008 3.992 4 N -0.315 5.315 5 C 0.142 3.858 6 C -0.585 4.585 7 H 0.072 0.928 8 C -0.189 4.189 9 N -0.565 5.565 10 Si 0.793 3.207 11 H -0.191 1.191 12 H -0.193 1.193 13 H -0.206 1.206 14 C 0.335 3.665 15 O -0.470 6.470 16 C -0.196 4.196 17 C -0.072 4.072 18 C -0.179 4.179 19 C -0.043 4.043 20 N -0.207 5.207 21 C -0.038 4.038 22 H 0.140 0.860 23 H 0.121 0.879 24 H 0.134 0.866 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.046 0.954 28 H 0.019 0.981 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.198 0.802 32 H 0.218 0.782 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.373 -4.574 -17.133 17.891 hybrid contribution 0.476 1.381 1.544 2.126 sum 2.849 -3.193 -15.589 16.165 Atomic orbital electron populations 1.24100 0.95179 1.03313 0.96544 1.23278 0.97058 0.97727 1.03495 1.20934 0.92161 0.96919 0.89212 1.48141 1.07934 1.64323 1.11135 1.18791 0.94086 0.94494 0.78416 1.21708 1.43401 0.93373 1.00058 0.92812 1.25856 0.94362 1.03613 0.95108 1.70061 1.43715 1.37607 1.05147 0.85346 0.78278 0.78860 0.78203 1.19109 1.19310 1.20606 1.18749 0.82236 0.76796 0.88762 1.90718 1.56362 1.54505 1.45447 1.20958 0.99702 1.04353 0.94608 1.21851 0.92594 0.95812 0.96902 1.22490 1.02779 0.99761 0.92840 1.23698 0.88795 0.90385 1.01387 1.67822 1.15684 1.23354 1.13825 1.23462 0.98354 0.93283 0.88680 0.85978 0.87912 0.86591 0.90082 0.88630 0.95403 0.98087 0.92281 0.84749 0.80187 0.78154 0.81216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 14.32 67.78 0.97 -2.78 16 2 C -0.20 -5.59 8.55 25.64 0.22 -5.37 16 3 C 0.13 4.40 5.35 85.63 0.46 4.85 16 4 N -0.59 -26.18 2.45 -833.94 -2.04 -28.22 16 5 C 0.26 14.46 5.22 85.64 0.45 14.91 16 6 C -0.55 -31.78 9.39 25.60 0.24 -31.54 16 7 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 8 C 0.01 0.57 5.46 84.65 0.46 1.04 16 9 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 10 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 14 C 0.55 24.60 7.27 86.78 0.63 25.23 16 15 O -0.59 -32.15 16.58 -3.89 -0.06 -32.22 16 16 C -0.19 -6.50 4.98 -20.00 -0.10 -6.60 16 17 C -0.05 -1.28 9.88 22.73 0.22 -1.05 16 18 C -0.16 -3.01 10.10 22.33 0.23 -2.78 16 19 C 0.11 2.09 11.17 84.71 0.95 3.04 16 20 N -0.50 -12.42 10.35 -194.76 -2.01 -14.44 16 21 C 0.12 3.43 8.66 85.02 0.74 4.16 16 22 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 23 H 0.10 2.46 7.84 -2.91 -0.02 2.44 16 24 H 0.12 3.10 6.53 -2.91 -0.02 3.08 16 25 H 0.08 2.82 7.78 -2.38 -0.02 2.80 16 26 H 0.10 2.87 5.26 -2.39 -0.01 2.86 16 27 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 28 H 0.00 0.06 7.35 -2.39 -0.02 0.05 16 29 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.13 3.90 8.06 -2.92 -0.02 3.88 16 31 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.20 1.89 8.06 -2.91 -0.02 1.86 16 33 H 0.17 4.65 4.11 -2.91 -0.01 4.64 16 Total: -1.00 -75.02 289.16 4.77 -70.25 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 1.11 Total: 10.46 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 5.46 Total: 3.09 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -3.77 Total: -98.40 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.06 Total: -32.22 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -75.02 4.77 -70.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292595998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.710 kcal (2) G-P(sol) polarization free energy of solvation -75.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds