Wall clock time and date at job start Sun Mar 29 2020 23:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21692 * 120.00349 * 359.97438 * 13 12 2 15 15 C 1.46426 * 119.99868 * 180.02562 * 13 12 2 16 16 C 1.34808 * 119.99932 * 180.02562 * 15 13 12 17 17 C 1.47219 * 119.99771 * 180.02562 * 16 15 13 18 18 C 1.40268 * 120.58084 * 180.02562 * 17 16 15 19 19 C 1.38283 * 118.26233 * 180.02562 * 18 17 16 20 20 C 1.38399 * 119.33789 * 359.97438 * 19 18 17 21 21 N 1.31939 * 121.13269 * 0.02562 * 20 19 18 22 22 C 1.31663 * 121.90611 * 359.70391 * 21 20 19 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 28 28 H 1.08000 * 120.00349 * 0.02562 * 15 13 12 29 29 H 1.07997 * 120.00213 * 0.02562 * 16 15 13 30 30 H 1.07999 * 120.86667 * 359.96809 * 18 17 16 31 31 H 1.07999 * 120.33147 * 180.02562 * 19 18 17 32 32 H 1.07996 * 119.43033 * 179.97438 * 20 19 18 33 33 H 1.08002 * 119.73490 * 180.31386 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8580 1.1628 2.4117 15 6 2.6356 -0.7081 3.5526 16 6 2.7638 -0.0357 4.7139 17 6 3.2556 -0.7294 5.9157 18 6 3.3932 -0.0418 7.1305 19 6 3.8600 -0.7401 8.2290 20 6 4.1728 -2.0818 8.0967 21 7 4.0338 -2.7040 6.9416 22 6 3.5886 -2.0862 5.8675 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7088 1.1611 -3.4845 27 1 2.2490 -1.6316 1.1527 28 1 2.8932 -1.7558 3.5040 29 1 2.5058 1.0119 4.7627 30 1 3.1421 1.0059 7.2057 31 1 3.9784 -0.2438 9.1808 32 1 4.5379 -2.6285 8.9536 33 1 3.4837 -2.6310 4.9410 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299426019.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:24 Heat of formation + Delta-G solvation = 6.866390 kcal Electronic energy + Delta-G solvation = -16369.666079 eV Core-core repulsion = 13588.450865 eV Total energy + Delta-G solvation = -2781.215214 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.28136 -38.85437 -35.06421 -34.28023 -32.51465 -32.33921 -30.13721 -28.67428 -25.28182 -24.72538 -23.74595 -21.98507 -20.10046 -19.24168 -17.70572 -17.20789 -16.19745 -15.91065 -15.24591 -14.99265 -14.27612 -14.20330 -13.97917 -13.92363 -13.30857 -13.13109 -12.42449 -12.04668 -11.88805 -11.69658 -11.10734 -11.00109 -10.86369 -10.70010 -10.33697 -10.23759 -9.86763 -9.67512 -9.17175 -9.06328 -8.56883 -8.50723 -7.89880 -6.12830 -4.22357 0.36446 1.02229 2.02015 3.25782 3.30920 3.32197 3.62510 3.98521 4.00778 4.21270 4.36477 4.57843 4.66923 4.73961 4.84033 5.09872 5.19471 5.28231 5.52225 5.63210 5.80251 5.86756 6.33998 6.38445 6.49707 6.82574 6.96029 7.14097 7.43548 7.55465 7.69028 7.72711 7.90681 8.14071 8.64422 8.76622 9.09482 9.45130 10.93189 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.047369 B = 0.003819 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.957134 B = 7329.403169 C = 7725.234302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.700 5.700 13 C 0.527 3.473 14 O -0.558 6.558 15 C -0.175 4.175 16 C -0.053 4.053 17 C -0.108 4.108 18 C -0.061 4.061 19 C -0.173 4.173 20 C 0.095 3.905 21 N -0.484 5.484 22 C 0.110 3.890 23 H 0.015 0.985 24 H 0.091 0.909 25 H 0.027 0.973 26 H 0.265 0.735 27 H 0.390 0.610 28 H 0.125 0.875 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.155 0.845 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.613 -4.630 17.782 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.346 5.346 13 C 0.314 3.686 14 O -0.439 6.439 15 C -0.196 4.196 16 C -0.074 4.074 17 C -0.110 4.110 18 C -0.087 4.087 19 C -0.193 4.193 20 C -0.062 4.062 21 N -0.192 5.192 22 C -0.048 4.048 23 H 0.034 0.966 24 H 0.109 0.891 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.223 0.777 28 H 0.143 0.857 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.172 0.828 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.525 -4.558 17.555 18.693 hybrid contribution 0.190 -0.037 -0.806 0.829 sum 4.715 -4.596 16.749 17.997 Atomic orbital electron populations 1.22078 0.98359 0.99170 1.00951 1.18772 0.91103 0.94050 0.79954 0.93256 1.21188 1.32579 1.13299 0.90336 0.92058 1.24894 0.94779 0.94952 0.99079 1.69894 1.35766 1.22434 1.24020 0.86491 0.79182 0.79587 0.81739 1.21122 1.20147 1.20131 1.46478 1.64084 1.13556 1.10511 1.18237 0.79346 0.87052 0.83952 1.90766 1.51908 1.15817 1.85417 1.23306 1.01934 1.00443 0.93948 1.22129 0.94954 1.00096 0.90185 1.20128 1.01124 0.95195 0.94591 1.21844 0.94827 1.00457 0.91575 1.22096 1.01293 0.96072 0.99816 1.22870 0.95718 0.92184 0.95420 1.67648 1.12613 1.39499 0.99460 1.23182 0.93367 0.91180 0.97061 0.96620 0.89089 0.95423 0.92491 0.77733 0.85708 0.84418 0.84279 0.84571 0.82767 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.73 2.56 -69.09 -0.18 6.55 16 3 H 0.05 1.45 7.58 -51.92 -0.39 1.06 16 4 C -0.54 -14.23 8.73 -34.44 -0.30 -14.53 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.95 11.32 55.43 0.63 -24.33 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.70 -14.61 5.06 -56.33 -0.29 -14.89 16 13 C 0.53 10.56 7.71 -12.96 -0.10 10.46 16 14 O -0.56 -13.36 15.89 5.20 0.08 -13.28 16 15 C -0.18 -2.56 9.42 -37.50 -0.35 -2.91 16 16 C -0.05 -0.70 9.48 -37.15 -0.35 -1.05 16 17 C -0.11 -1.24 5.88 -104.91 -0.62 -1.85 16 18 C -0.06 -0.58 9.95 -38.80 -0.39 -0.97 16 19 C -0.17 -1.40 10.09 -39.51 -0.40 -1.80 16 20 C 0.09 0.87 11.17 -17.45 -0.19 0.67 16 21 N -0.48 -5.65 10.34 -12.83 -0.13 -5.79 16 22 C 0.11 1.25 10.59 -17.05 -0.18 1.07 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.27 7.10 8.31 -40.82 -0.34 6.77 16 27 H 0.39 6.94 8.52 -40.82 -0.35 6.59 16 28 H 0.13 1.42 6.10 -52.49 -0.32 1.10 16 29 H 0.14 1.91 7.52 -52.49 -0.39 1.51 16 30 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.16 1.58 6.19 -52.49 -0.32 1.26 16 LS Contribution 292.10 15.07 4.40 4.40 Total: -1.00 -31.96 292.10 -6.89 -38.85 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.75 Total: 5.43 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -2.81 Total: -6.00 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.21 Total: -45.00 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.96 -6.89 -38.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299426019.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.713 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds