Wall clock time and date at job start Sun Mar 29 2020 22:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 119.99748 * 2 1 4 4 N 1.46502 * 109.46979 * 124.99615 * 3 2 1 5 5 C 1.34776 * 119.99826 * 179.97438 * 4 3 2 6 6 O 1.21586 * 119.99702 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99956 * 180.02562 * 5 4 3 8 8 C 1.39960 * 119.99926 * 174.28905 * 7 5 4 9 9 C 1.39285 * 119.94519 * 145.41585 * 8 7 5 10 10 C 1.38491 * 120.43085 * 179.97438 * 9 8 7 11 11 C 1.37689 * 120.31567 * 0.30228 * 10 9 8 12 12 C 1.40737 * 119.88276 * 359.42939 * 11 10 9 13 13 C 1.41410 * 120.21242 * 180.31819 * 12 11 10 14 14 H 1.07993 * 120.00563 * 214.43186 * 13 12 11 15 15 C 1.39938 * 119.99695 * 34.41958 * 13 12 11 16 16 N 1.30827 * 120.00286 * 5.54785 * 15 13 12 17 17 Si 1.86796 * 119.99893 * 185.54183 * 15 13 12 18 18 H 1.48500 * 109.47474 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47042 * 120.00229 * 17 15 13 20 20 H 1.48499 * 109.47374 * 240.00240 * 17 15 13 21 21 C 1.38231 * 119.94880 * 325.39453 * 8 7 5 22 22 H 1.07996 * 120.00504 * 0.02562 * 1 2 3 23 23 H 1.08009 * 119.99782 * 179.97438 * 1 2 3 24 24 H 1.07996 * 120.00504 * 179.97438 * 2 1 3 25 25 H 1.08992 * 109.47228 * 4.99815 * 3 2 1 26 26 H 1.09003 * 109.46679 * 244.99471 * 3 2 1 27 27 H 0.96996 * 119.99891 * 0.02562 * 4 3 2 28 28 H 0.97000 * 120.00401 * 354.28049 * 7 5 4 29 29 H 1.07999 * 119.78873 * 0.02562 * 9 8 7 30 30 H 1.07995 * 119.84139 * 180.02562 * 10 9 8 31 31 H 1.07997 * 120.05639 * 179.70724 * 11 10 9 32 32 H 0.96990 * 120.00468 * 179.97438 * 16 15 13 33 33 H 1.08008 * 120.15871 * 359.97320 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 3.7788 2.4088 1.3329 6 8 3.7154 3.3576 0.5753 7 7 4.6349 2.4333 2.3736 8 6 5.5340 3.4965 2.5152 9 6 5.8784 3.9513 3.7859 10 6 6.7674 5.0023 3.9377 11 6 7.3161 5.6136 2.8327 12 6 6.9818 5.1611 1.5426 13 6 7.5464 5.7794 0.4031 14 1 6.9669 5.8733 -0.5033 15 6 8.8561 6.2700 0.4501 16 7 9.5954 6.0611 1.5091 17 14 9.5490 7.2230 -0.9994 18 1 8.5193 7.3218 -2.0647 19 1 9.9345 8.5869 -0.5562 20 1 10.7441 6.5185 -1.5293 21 6 6.0790 4.0934 1.3938 22 1 -0.5401 0.9352 -0.0004 23 1 -0.5400 -0.9354 -0.0004 24 1 1.8500 -0.9352 0.0004 25 1 1.3585 2.1316 0.0895 26 1 2.6213 1.4026 -0.9314 27 1 3.0449 0.5746 1.7352 28 1 4.6279 1.7141 3.0245 29 1 5.4500 3.4807 4.6585 30 1 7.0281 5.3469 4.9274 31 1 8.0053 6.4359 2.9558 32 1 10.5033 6.4007 1.5415 33 1 5.8132 3.7409 0.4081 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313455788.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:20 Heat of formation + Delta-G solvation = 11.570081 kcal Electronic energy + Delta-G solvation = -16761.173080 eV Core-core repulsion = 13980.161834 eV Total energy + Delta-G solvation = -2781.011247 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.88616 -37.43910 -35.74679 -34.28959 -33.08902 -32.45524 -29.73713 -28.19969 -25.82045 -25.17202 -21.64970 -20.80576 -20.54410 -19.76547 -17.90970 -17.55671 -16.14130 -15.47419 -15.34317 -14.74530 -14.48053 -14.27291 -14.02186 -13.25986 -13.05962 -12.80747 -12.49600 -12.11008 -11.60060 -11.33764 -11.11003 -11.08903 -10.88703 -10.38939 -10.21793 -9.89232 -9.59394 -9.40295 -9.18680 -8.92787 -8.84679 -7.31097 -6.82824 -6.55337 -4.29279 1.84465 2.78489 2.93703 3.15899 3.19974 3.23385 3.25168 3.75670 4.05908 4.60971 4.64118 4.77985 4.88269 5.44263 5.61606 5.67792 5.75062 6.26639 6.28064 6.36536 6.41778 6.63186 6.82805 6.84291 7.08646 7.15533 7.31552 7.40484 7.75673 7.86108 8.02496 8.19469 8.31183 8.48296 8.74570 8.96904 9.05211 9.09162 10.38504 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029735 B = 0.005006 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.426315 B = 5591.634049 C = 6389.591797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.171 4.171 3 C 0.165 3.835 4 N -0.749 5.749 5 C 0.697 3.303 6 O -0.567 6.567 7 N -0.682 5.682 8 C 0.163 3.837 9 C -0.252 4.252 10 C -0.097 4.097 11 C -0.159 4.159 12 C 0.121 3.879 13 C -0.464 4.464 14 H 0.077 0.923 15 C 0.073 3.927 16 N -0.812 5.812 17 Si 0.911 3.089 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.276 1.276 21 C -0.200 4.200 22 H 0.100 0.900 23 H 0.101 0.899 24 H 0.114 0.886 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.393 0.607 28 H 0.394 0.606 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.276 0.724 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.378 -10.246 0.509 14.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.189 4.189 3 C 0.041 3.959 4 N -0.407 5.407 5 C 0.398 3.602 6 O -0.442 6.442 7 N -0.328 5.328 8 C 0.071 3.929 9 C -0.274 4.274 10 C -0.116 4.116 11 C -0.179 4.179 12 C 0.118 3.882 13 C -0.495 4.495 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.439 5.439 17 Si 0.736 3.264 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.201 1.201 21 C -0.222 4.222 22 H 0.119 0.881 23 H 0.119 0.881 24 H 0.132 0.868 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.227 0.773 28 H 0.227 0.773 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.136 0.864 32 H 0.087 0.913 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.215 -9.322 -0.165 13.830 hybrid contribution 0.427 -0.485 0.042 0.647 sum -9.788 -9.807 -0.123 13.856 Atomic orbital electron populations 1.23955 0.95788 1.02286 0.98854 1.23052 0.96193 0.98286 1.01406 1.20209 0.91256 0.94982 0.89424 1.45092 1.43659 1.19477 1.32423 1.15980 0.79062 0.82980 0.82210 1.90980 1.70613 1.35203 1.47426 1.42576 1.37317 1.25615 1.27307 1.17252 0.91507 0.89705 0.94448 1.20074 1.09089 1.04688 0.93531 1.20482 0.97463 0.96268 0.97381 1.21361 1.02911 1.01861 0.91797 1.17507 0.88765 0.88729 0.93208 1.19564 0.97788 1.33331 0.98843 0.90489 1.25836 0.97075 0.94305 0.97003 1.69785 1.08728 1.37200 1.28229 0.86217 0.79145 0.79430 0.81602 1.18551 1.19944 1.20123 1.21122 1.04322 1.00552 0.96167 0.88139 0.88056 0.86797 0.91291 0.90747 0.77348 0.77262 0.89249 0.88947 0.86423 0.91279 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 14.32 29.02 0.42 -0.86 16 2 C -0.17 -1.46 9.63 -36.02 -0.35 -1.80 16 3 C 0.17 1.97 6.11 -5.19 -0.03 1.94 16 4 N -0.75 -9.91 5.55 -66.41 -0.37 -10.28 16 5 C 0.70 13.08 8.28 -86.92 -0.72 12.36 16 6 O -0.57 -13.42 14.13 5.29 0.07 -13.34 16 7 N -0.68 -12.53 5.34 -14.27 -0.08 -12.61 16 8 C 0.16 3.79 6.25 -83.76 -0.52 3.27 16 9 C -0.25 -5.63 9.97 -39.10 -0.39 -6.02 16 10 C -0.10 -2.29 10.02 -39.69 -0.40 -2.69 16 11 C -0.16 -4.26 8.62 -38.84 -0.33 -4.60 16 12 C 0.12 3.40 5.50 -106.85 -0.59 2.81 16 13 C -0.46 -13.11 9.04 -37.74 -0.34 -13.45 16 14 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 15 C 0.07 1.92 5.31 -17.34 -0.09 1.82 16 16 N -0.81 -21.80 10.97 55.55 0.61 -21.19 16 17 Si 0.91 19.76 29.56 -169.99 -5.03 14.73 16 18 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 C -0.20 -5.34 8.39 -38.69 -0.32 -5.66 16 22 H 0.10 0.75 7.84 -52.49 -0.41 0.33 16 23 H 0.10 0.59 8.06 -52.48 -0.42 0.17 16 24 H 0.11 0.82 8.06 -52.49 -0.42 0.40 16 25 H 0.07 0.88 7.79 -51.93 -0.40 0.47 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.39 3.86 8.48 -40.82 -0.35 3.51 16 28 H 0.39 5.54 8.84 -40.82 -0.36 5.18 16 29 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.12 3.23 6.48 -52.49 -0.34 2.89 16 32 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 33 H 0.11 2.97 6.51 -52.48 -0.34 2.63 16 LS Contribution 290.78 15.07 4.38 4.38 Total: -1.00 -32.29 290.78 -7.94 -40.23 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -3.87 Total: 10.96 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -3.67 Total: -12.89 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.16 Total: -44.07 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.07 Total: -13.34 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.29 -7.94 -40.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313455788.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.804 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds