Wall clock time and date at job start Sun Mar 29 2020 22:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86805 * 120.00139 * 2 1 4 4 H 1.48500 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46825 * 299.99803 * 3 2 1 6 6 H 1.48501 * 109.47016 * 59.99826 * 3 2 1 7 7 C 1.39931 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00224 * 195.62658 * 7 2 1 9 9 C 1.41404 * 120.00092 * 15.63323 * 7 2 1 10 10 C 1.40778 * 120.21165 * 29.19119 * 9 7 2 11 11 C 1.37641 * 119.88579 * 179.97438 * 10 9 7 12 12 C 1.38524 * 120.32194 * 0.25182 * 11 10 9 13 13 C 1.39243 * 120.42900 * 359.49347 * 12 11 10 14 14 N 1.39959 * 119.94782 * 180.27386 * 13 12 11 15 15 C 1.34778 * 119.99987 * 33.25770 * 14 13 12 16 16 O 1.21591 * 119.99989 * 5.14486 * 15 14 13 17 17 N 1.34768 * 120.00192 * 185.13927 * 15 14 13 18 18 C 1.46502 * 120.00052 * 179.97438 * 17 15 14 19 19 C 1.53004 * 117.49656 * 223.74750 * 18 17 15 20 20 C 1.53004 * 117.49608 * 155.09286 * 18 17 15 21 21 C 1.38276 * 120.10569 * 0.50773 * 13 12 11 22 22 H 0.96993 * 119.99896 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.05473 * 359.96141 * 10 9 7 24 24 H 1.08007 * 119.83846 * 179.97438 * 11 10 9 25 25 H 1.08008 * 119.78787 * 179.71923 * 12 11 10 26 26 H 0.96998 * 119.99854 * 213.24892 * 14 13 12 27 27 H 0.97000 * 120.00028 * 0.02562 * 17 15 14 28 28 H 1.08991 * 115.54952 * 9.42334 * 18 17 15 29 29 H 1.08993 * 117.50248 * 0.02562 * 19 18 17 30 30 H 1.09003 * 117.49056 * 145.02361 * 19 18 17 31 31 H 1.09004 * 117.49606 * 214.98338 * 20 18 17 32 32 H 1.08999 * 117.50010 * 359.97438 * 20 18 17 33 33 H 1.07998 * 120.16219 * 179.72341 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3965 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0580 -1.2290 0.2525 9 6 1.3402 -2.4139 -0.3289 10 6 0.2414 -2.3957 -1.2087 11 6 -0.4034 -3.5699 -1.5253 12 6 0.0204 -4.7698 -0.9781 13 6 1.1090 -4.8039 -0.1105 14 7 1.5321 -6.0227 0.4320 15 6 1.4190 -7.1564 -0.2881 16 8 1.0373 -7.1085 -1.4415 17 7 1.7290 -8.3432 0.2703 18 6 1.6055 -9.5755 -0.5123 19 6 0.9667 -10.7858 0.1719 20 6 2.4733 -10.7655 -0.0978 21 6 1.7696 -3.6350 0.2196 22 1 -0.4849 0.8400 -0.0004 23 1 -0.0952 -1.4619 -1.6345 24 1 -1.2466 -3.5549 -2.2000 25 1 -0.4947 -5.6855 -1.2288 26 1 1.9069 -6.0515 1.3262 27 1 2.0332 -8.3815 1.1905 28 1 1.4132 -9.4393 -1.5764 29 1 0.6380 -10.6650 1.2041 30 1 0.3544 -11.4460 -0.4424 31 1 2.8517 -11.4123 -0.8894 32 1 3.1364 -10.6313 0.7568 33 1 2.6113 -3.6598 0.8959 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313456709.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:04 Heat of formation + Delta-G solvation = 17.194775 kcal Electronic energy + Delta-G solvation = -16749.123144 eV Core-core repulsion = 13968.355803 eV Total energy + Delta-G solvation = -2780.767342 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.02449 -37.83106 -36.74733 -34.32929 -33.24818 -32.28829 -29.78235 -27.97550 -25.18167 -22.83933 -22.56614 -21.15823 -20.85764 -20.15041 -18.11138 -17.60273 -16.34384 -15.44739 -15.07328 -14.99762 -14.51907 -14.36310 -13.98437 -13.07821 -12.91599 -12.75089 -12.21780 -11.85016 -11.75035 -11.42424 -11.29714 -11.09728 -10.65939 -10.60608 -10.55605 -10.17243 -9.70104 -9.54115 -9.22322 -8.93145 -8.70536 -7.39849 -6.82918 -6.69858 -4.33473 2.72063 2.84735 2.92757 3.10949 3.16364 3.23466 3.50463 3.92426 3.98422 4.46111 4.65398 4.70550 4.81985 4.85251 5.42224 5.61843 5.70790 5.79490 5.87788 6.30035 6.54771 6.59761 6.73312 6.87651 6.96812 7.07455 7.25320 7.38357 7.65295 7.82655 8.06362 8.10265 8.27407 8.41806 8.65622 8.90127 8.95182 9.03336 10.27202 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.059279 B = 0.004252 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.228422 B = 6583.821965 C = 6879.967103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.469 4.469 8 H 0.077 0.923 9 C 0.125 3.875 10 C -0.163 4.163 11 C -0.096 4.096 12 C -0.222 4.222 13 C 0.168 3.832 14 N -0.679 5.679 15 C 0.703 3.297 16 O -0.570 6.570 17 N -0.723 5.723 18 C 0.107 3.893 19 C -0.199 4.199 20 C -0.194 4.194 21 C -0.244 4.244 22 H 0.279 0.721 23 H 0.114 0.886 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.396 0.604 27 H 0.395 0.605 28 H 0.139 0.861 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 -13.134 3.024 13.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.500 4.500 8 H 0.095 0.905 9 C 0.122 3.878 10 C -0.182 4.182 11 C -0.115 4.115 12 C -0.243 4.243 13 C 0.076 3.924 14 N -0.325 5.325 15 C 0.403 3.597 16 O -0.446 6.446 17 N -0.377 5.377 18 C 0.000 4.000 19 C -0.238 4.238 20 C -0.233 4.233 21 C -0.266 4.266 22 H 0.089 0.911 23 H 0.132 0.868 24 H 0.110 0.890 25 H 0.122 0.878 26 H 0.230 0.770 27 H 0.228 0.772 28 H 0.156 0.844 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.366 -12.925 1.968 13.287 hybrid contribution 0.680 0.646 1.075 1.427 sum 3.047 -12.279 3.044 13.013 Atomic orbital electron populations 1.69826 1.07460 1.28955 1.36329 1.25845 0.94719 1.01072 0.92339 0.86294 0.80929 0.81182 0.78451 1.18518 1.19791 1.20126 1.19500 0.97261 0.90832 1.42371 0.90513 1.17346 0.90903 0.91330 0.88207 1.21283 0.99723 0.96523 1.00713 1.20583 0.98808 0.92820 0.99326 1.20368 1.00039 0.97434 1.06469 1.17242 0.94763 0.82278 0.98087 1.42613 1.65773 1.05621 1.18499 1.15899 0.78755 0.80109 0.84908 1.90931 1.52212 1.85534 1.15908 1.44512 1.72862 1.04565 1.15738 1.21366 1.02921 0.78958 0.96797 1.23458 0.95518 1.02290 1.02495 1.23404 0.93862 1.01969 1.04063 1.20706 1.04730 0.92134 1.09009 0.91055 0.86778 0.88999 0.87842 0.77003 0.77185 0.84366 0.88652 0.88112 0.87995 0.88645 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.90 11.15 55.55 0.62 -20.28 16 2 C 0.08 1.95 5.15 -17.35 -0.09 1.86 16 3 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.47 -12.52 9.04 -37.74 -0.34 -12.86 16 8 H 0.08 1.97 7.89 -52.49 -0.41 1.56 16 9 C 0.13 3.37 5.52 -106.85 -0.59 2.78 16 10 C -0.16 -4.33 8.66 -38.84 -0.34 -4.67 16 11 C -0.10 -2.39 10.02 -39.69 -0.40 -2.79 16 12 C -0.22 -5.43 8.66 -39.10 -0.34 -5.77 16 13 C 0.17 3.90 6.27 -83.76 -0.53 3.37 16 14 N -0.68 -12.41 5.35 -14.27 -0.08 -12.48 16 15 C 0.70 12.72 8.30 -86.92 -0.72 11.99 16 16 O -0.57 -12.71 13.57 5.29 0.07 -12.63 16 17 N -0.72 -9.34 5.57 -58.67 -0.33 -9.66 16 18 C 0.11 1.24 6.43 -67.93 -0.44 0.80 16 19 C -0.20 -1.76 10.46 -26.69 -0.28 -2.04 16 20 C -0.19 -1.63 10.46 -26.69 -0.28 -1.91 16 21 C -0.24 -5.98 9.70 -38.69 -0.38 -6.35 16 22 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 23 H 0.11 3.11 6.43 -52.48 -0.34 2.77 16 24 H 0.09 2.05 8.06 -52.48 -0.42 1.63 16 25 H 0.10 2.53 6.39 -52.48 -0.34 2.19 16 26 H 0.40 5.71 8.83 -40.82 -0.36 5.35 16 27 H 0.39 3.82 8.85 -40.82 -0.36 3.46 16 28 H 0.14 1.84 7.40 -51.93 -0.38 1.46 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 287.97 15.07 4.34 4.34 Total: -1.00 -31.12 287.97 -8.98 -40.09 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -3.86 Total: 12.41 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -4.71 Total: -15.57 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.22 Total: -42.43 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.63 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.12 -8.98 -40.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313456709.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.290 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds