Wall clock time and date at job start Sun Mar 29 2020 22:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99618 * 2 1 4 4 H 1.48503 * 109.46865 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47267 * 299.99239 * 3 2 1 6 6 H 1.48504 * 109.47356 * 59.99583 * 3 2 1 7 7 C 1.39933 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99644 * 185.42931 * 7 2 1 9 9 C 1.41403 * 119.99592 * 5.43688 * 7 2 1 10 10 C 1.40778 * 120.21608 * 34.39211 * 9 7 2 11 11 C 1.37638 * 119.88538 * 179.97438 * 10 9 7 12 12 C 1.38526 * 120.32356 * 0.02562 * 11 10 9 13 13 C 1.39243 * 120.43037 * 359.97438 * 12 11 10 14 14 N 1.39940 * 119.94823 * 179.71903 * 13 12 11 15 15 C 1.34770 * 120.00032 * 145.33992 * 14 13 12 16 16 O 1.21293 * 120.00294 * 354.41181 * 15 14 13 17 17 C 1.50708 * 119.99881 * 174.41105 * 15 14 13 18 18 N 1.46893 * 115.55057 * 9.41830 * 17 15 14 19 19 C 1.53001 * 117.49704 * 223.74554 * 17 15 14 20 20 C 1.53004 * 117.49810 * 155.08805 * 17 15 14 21 21 C 1.38280 * 120.10712 * 359.97438 * 13 12 11 22 22 H 0.96996 * 120.00160 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.05486 * 359.97438 * 10 9 7 24 24 H 1.08004 * 119.83516 * 179.97438 * 11 10 9 25 25 H 1.08005 * 119.78455 * 179.97438 * 12 11 10 26 26 H 0.97001 * 119.99766 * 325.34256 * 14 13 12 27 27 H 1.00898 * 111.00034 * 325.58028 * 18 17 15 28 28 H 1.00898 * 111.00217 * 89.53773 * 18 17 15 29 29 H 1.09002 * 117.49853 * 0.02562 * 19 17 15 30 30 H 1.09002 * 117.49933 * 145.01872 * 19 17 15 31 31 H 1.08995 * 117.49813 * 214.97716 * 20 17 15 32 32 H 1.09002 * 117.49368 * 359.97438 * 20 17 15 33 33 H 1.07998 * 120.16232 * 179.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8833 2.3966 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0844 -1.2138 0.0890 9 6 1.3058 -2.4337 -0.1149 10 6 0.1429 -2.5106 -0.9047 11 6 -0.5351 -3.7035 -1.0127 12 6 -0.0792 -4.8298 -0.3475 13 6 1.0695 -4.7688 0.4372 14 7 1.5178 -5.9113 1.1095 15 6 2.8390 -6.1267 1.2652 16 8 3.6407 -5.3858 0.7365 17 6 3.3204 -7.2882 2.0962 18 7 2.2841 -8.2430 2.5109 19 6 4.4741 -7.0315 3.0677 20 6 4.7131 -7.8445 1.7930 21 6 1.7651 -3.5797 0.5574 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2166 -1.6350 -1.4248 24 1 -1.4274 -3.7615 -1.6185 25 1 -0.6182 -5.7614 -0.4381 26 1 0.8775 -6.5483 1.4634 27 1 1.4087 -7.7730 2.6864 28 1 2.1707 -8.9743 1.8250 29 1 4.8847 -6.0225 3.1062 30 1 4.4644 -7.5714 4.0146 31 1 4.8604 -8.9190 1.9017 32 1 5.2809 -7.3707 0.9922 33 1 2.6559 -3.5313 1.1660 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313476901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:42 Heat of formation + Delta-G solvation = 12.558467 kcal Electronic energy + Delta-G solvation = -17160.891260 eV Core-core repulsion = 14379.922873 eV Total energy + Delta-G solvation = -2780.968387 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.17504 -37.74387 -36.32852 -34.61339 -33.12065 -31.18583 -29.83913 -28.28092 -25.32190 -23.87128 -22.53736 -21.14001 -20.70604 -19.13026 -17.99036 -17.30666 -15.87625 -15.57872 -15.04827 -14.74613 -14.66277 -14.43233 -14.24081 -13.19325 -13.01532 -12.78614 -12.19715 -11.72366 -11.51911 -11.23603 -11.15822 -11.02102 -10.91202 -10.80029 -10.45787 -10.18617 -9.78414 -9.56836 -9.34254 -9.07516 -8.67172 -7.41965 -6.97144 -6.63979 -4.37923 2.40598 2.79389 3.09083 3.11562 3.17480 3.20432 3.41296 3.90643 3.99475 4.01322 4.69004 4.81961 4.85268 4.99860 5.51777 5.60669 5.64498 5.86409 6.13370 6.16295 6.30099 6.60879 6.70488 6.96166 6.98272 7.04309 7.06195 7.26165 7.49774 7.67338 7.89407 8.07488 8.09038 8.21670 8.57644 8.66948 8.92879 8.95811 10.30565 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029647 B = 0.005858 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.229689 B = 4778.967691 C = 5504.853762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.078 0.922 9 C 0.120 3.880 10 C -0.156 4.156 11 C -0.097 4.097 12 C -0.251 4.251 13 C 0.144 3.856 14 N -0.667 5.667 15 C 0.517 3.483 16 O -0.513 6.513 17 C 0.002 3.998 18 N -0.804 5.804 19 C -0.130 4.130 20 C -0.141 4.141 21 C -0.200 4.200 22 H 0.278 0.722 23 H 0.119 0.881 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.393 0.607 27 H 0.346 0.654 28 H 0.348 0.652 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.374 -11.239 3.589 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.494 4.494 8 H 0.096 0.904 9 C 0.117 3.883 10 C -0.176 4.176 11 C -0.116 4.116 12 C -0.273 4.273 13 C 0.053 3.947 14 N -0.312 5.312 15 C 0.301 3.699 16 O -0.386 6.386 17 C -0.095 4.095 18 N -0.337 5.337 19 C -0.168 4.168 20 C -0.179 4.179 21 C -0.221 4.221 22 H 0.088 0.912 23 H 0.137 0.863 24 H 0.112 0.888 25 H 0.108 0.892 26 H 0.227 0.773 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.247 -10.688 3.860 11.818 hybrid contribution -0.775 0.693 -0.585 1.193 sum 2.471 -9.995 3.274 10.804 Atomic orbital electron populations 1.69779 1.07303 1.28772 1.37890 1.25850 0.94880 1.01068 0.92453 0.86194 0.80791 0.80902 0.78400 1.18513 1.19867 1.20032 1.19563 0.94983 0.89977 1.44909 0.90436 1.17523 0.91314 0.91642 0.87792 1.21386 0.98523 0.96245 1.01429 1.20501 0.98568 0.93283 0.99228 1.20090 1.01133 0.98253 1.07790 1.17448 0.96241 0.84950 0.96078 1.43383 1.06713 1.24295 1.56775 1.20221 0.82717 0.85902 0.81038 1.90756 1.53947 1.47155 1.46779 1.21436 0.89720 0.94839 1.03479 1.58502 1.11000 1.13917 1.50256 1.23153 0.97106 1.02090 0.94457 1.23138 0.93921 1.00385 1.00436 1.21076 1.03310 0.91871 1.05839 0.91153 0.86288 0.88831 0.89244 0.77278 0.83896 0.83832 0.87803 0.87392 0.87663 0.87387 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.44 10.96 55.55 0.61 -20.83 16 2 C 0.07 1.89 5.31 -17.34 -0.09 1.80 16 3 Si 0.91 19.44 29.56 -169.99 -5.03 14.42 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.46 -12.86 9.04 -37.74 -0.34 -13.20 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.12 3.33 5.50 -106.85 -0.59 2.74 16 10 C -0.16 -4.11 8.62 -38.84 -0.33 -4.44 16 11 C -0.10 -2.25 10.01 -39.69 -0.40 -2.65 16 12 C -0.25 -5.52 9.97 -39.10 -0.39 -5.91 16 13 C 0.14 3.29 6.24 -83.77 -0.52 2.76 16 14 N -0.67 -11.96 5.28 -9.91 -0.05 -12.02 16 15 C 0.52 9.37 7.28 -10.98 -0.08 9.29 16 16 O -0.51 -11.52 14.23 5.55 0.08 -11.44 16 17 C 0.00 0.03 3.15 -132.75 -0.42 -0.39 16 18 N -0.80 -8.26 9.62 -0.19 0.00 -8.26 16 19 C -0.13 -1.58 10.07 -26.69 -0.27 -1.85 16 20 C -0.14 -1.64 9.98 -26.69 -0.27 -1.91 16 21 C -0.20 -5.22 8.39 -38.68 -0.32 -5.55 16 22 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 23 H 0.12 3.22 6.47 -52.49 -0.34 2.88 16 24 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 25 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 26 H 0.39 5.45 6.86 -40.82 -0.28 5.17 16 27 H 0.35 3.33 7.11 -39.29 -0.28 3.05 16 28 H 0.35 2.95 9.08 -39.29 -0.36 2.60 16 29 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.11 1.39 7.89 -51.93 -0.41 0.98 16 33 H 0.11 2.85 6.52 -52.49 -0.34 2.51 16 LS Contribution 285.18 15.07 4.30 4.30 Total: -1.00 -30.92 285.18 -7.79 -38.71 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -3.67 Total: 14.42 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -4.02 Total: -19.31 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.55 Total: -41.10 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.92 -7.79 -38.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313476901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.268 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds