Wall clock time and date at job start Sun Mar 29 2020 22:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48502 * 109.47160 * 270.00317 * 3 2 1 5 5 H 1.48497 * 109.46808 * 30.00247 * 3 2 1 6 6 H 1.48499 * 109.47287 * 149.99950 * 3 2 1 7 7 C 1.37884 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99620 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00347 * 180.02562 * 7 2 1 10 10 N 1.46494 * 109.47377 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00453 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99745 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00459 * 179.97438 * 11 10 9 14 14 H 1.09000 * 110.26072 * 299.39753 * 13 11 10 15 15 C 1.54335 * 110.37938 * 177.28890 * 13 11 10 16 16 C 1.54367 * 102.39278 * 214.67775 * 15 13 11 17 17 C 1.51225 * 105.11710 * 26.29059 * 16 15 13 18 18 C 1.38746 * 130.69281 * 162.82822 * 17 16 15 19 19 C 1.38572 * 118.55570 * 180.02562 * 18 17 16 20 20 C 1.38234 * 118.99275 * 359.97438 * 19 18 17 21 21 N 1.31684 * 120.79945 * 0.25665 * 20 19 18 22 22 C 1.32303 * 122.02928 * 359.46809 * 21 20 19 23 23 H 0.96993 * 120.00270 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47397 * 59.99427 * 9 7 2 25 25 H 1.09007 * 109.46928 * 299.99736 * 9 7 2 26 26 H 0.97002 * 120.00171 * 359.97438 * 10 9 7 27 27 H 1.08999 * 110.82473 * 332.90599 * 15 13 11 28 28 H 1.09006 * 110.82260 * 96.25519 * 15 13 11 29 29 H 1.09000 * 110.31020 * 267.38608 * 16 15 13 30 30 H 1.09000 * 110.31376 * 145.20281 * 16 15 13 31 31 H 1.07996 * 120.71861 * 0.03055 * 18 17 16 32 32 H 1.08004 * 120.50303 * 179.97438 * 19 18 17 33 33 H 1.08002 * 119.59792 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 5.3248 -2.8216 -0.0001 12 8 6.1129 -1.8998 -0.0006 13 6 5.8272 -4.2424 0.0003 14 1 5.4799 -4.7653 0.8914 15 6 7.3688 -4.2674 -0.0683 16 6 7.6422 -5.5262 -0.9190 17 6 6.4062 -5.7014 -1.7726 18 6 6.2008 -6.4466 -2.9247 19 6 4.9458 -6.4257 -3.5121 20 6 3.9469 -5.6668 -2.9316 21 7 4.1792 -4.9679 -1.8400 22 6 5.3616 -4.9658 -1.2465 23 1 -0.4850 0.8400 0.0004 24 1 3.8745 -0.6808 0.8905 25 1 3.8751 -0.6797 -0.8895 26 1 3.3695 -3.3126 -0.0001 27 1 7.7491 -3.3744 -0.5643 28 1 7.7994 -4.3683 0.9280 29 1 7.7836 -6.3944 -0.2753 30 1 8.5187 -5.3742 -1.5488 31 1 7.0014 -7.0303 -3.3543 32 1 4.7512 -6.9938 -4.4098 33 1 2.9653 -5.6431 -3.3815 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335088721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:01 Heat of formation + Delta-G solvation = -8.240152 kcal Electronic energy + Delta-G solvation = -17268.719460 eV Core-core repulsion = 14486.849177 eV Total energy + Delta-G solvation = -2781.870283 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.92417 -38.71475 -35.98202 -34.17894 -32.78353 -32.16695 -29.38742 -28.89283 -27.18326 -23.52032 -22.81781 -21.82601 -20.88271 -19.56447 -17.49726 -16.70907 -16.45667 -16.03189 -15.33740 -14.94580 -14.60334 -14.11991 -13.85116 -13.52178 -13.29820 -12.91004 -12.82239 -12.32243 -12.18530 -11.84073 -11.64808 -11.55530 -11.04832 -10.90347 -10.70984 -9.92543 -9.80743 -9.40785 -9.37636 -9.15209 -8.70080 -8.67088 -8.01343 -6.13790 -4.14666 1.04634 1.25748 3.19648 3.31555 3.37526 3.46394 3.74251 3.97662 4.10122 4.34332 4.39766 4.73902 4.81747 4.86772 5.08642 5.14451 5.21262 5.27968 5.47462 5.51844 5.62458 5.71537 5.79264 5.94569 6.08144 6.16286 6.24084 6.65480 6.88523 7.15553 7.35050 7.49000 8.03131 8.23105 8.65045 8.84398 9.03636 9.46888 10.98439 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029351 B = 0.006119 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.737666 B = 4575.133172 C = 5259.694558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.538 4.538 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.689 5.689 11 C 0.510 3.490 12 O -0.561 6.561 13 C -0.064 4.064 14 H 0.117 0.883 15 C -0.102 4.102 16 C -0.078 4.078 17 C -0.147 4.147 18 C -0.068 4.068 19 C -0.175 4.175 20 C 0.108 3.892 21 N -0.464 5.464 22 C 0.129 3.871 23 H 0.266 0.734 24 H 0.024 0.976 25 H 0.018 0.982 26 H 0.403 0.597 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.203 -14.911 -4.127 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.575 4.575 8 H 0.099 0.901 9 C 0.098 3.902 10 N -0.336 5.336 11 C 0.294 3.706 12 O -0.441 6.441 13 C -0.086 4.086 14 H 0.134 0.866 15 C -0.140 4.140 16 C -0.115 4.115 17 C -0.149 4.149 18 C -0.093 4.093 19 C -0.195 4.195 20 C -0.050 4.050 21 N -0.172 5.172 22 C -0.009 4.009 23 H 0.076 0.924 24 H 0.042 0.958 25 H 0.036 0.964 26 H 0.238 0.762 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 12.860 -13.606 -3.767 19.097 hybrid contribution 0.474 -0.041 -0.555 0.731 sum 13.334 -13.647 -4.323 19.563 Atomic orbital electron populations 1.69879 1.06171 1.27248 1.49880 1.24787 0.94769 0.99041 0.94051 0.86836 0.80591 0.83384 0.78972 1.19956 1.20951 1.18544 1.21113 0.88535 0.95238 1.52658 0.90134 1.19487 0.95315 0.78863 0.96549 1.46125 1.05655 1.11129 1.70740 1.20023 0.83487 0.89652 0.77439 1.90628 1.55658 1.45755 1.52087 1.20935 0.97325 0.94520 0.95788 0.86568 1.22259 0.91956 0.98540 1.01247 1.21002 0.94897 0.98711 0.96900 1.21436 0.98030 0.98824 0.96649 1.21018 0.97279 0.97177 0.93870 1.22088 0.94090 1.01693 1.01644 1.22717 0.99513 0.91652 0.91092 1.66869 1.22541 1.18397 1.09429 1.21468 0.89185 0.94794 0.95455 0.92382 0.95765 0.96378 0.76161 0.88794 0.89553 0.89813 0.90198 0.85135 0.84622 0.82310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.96 55.43 0.77 -26.47 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 4 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.54 -15.41 9.83 -34.44 -0.34 -15.75 16 8 H 0.08 2.42 7.84 -52.48 -0.41 2.01 16 9 C 0.22 5.73 4.50 -5.20 -0.02 5.71 16 10 N -0.69 -15.33 5.32 -61.48 -0.33 -15.66 16 11 C 0.51 10.41 7.18 -10.99 -0.08 10.33 16 12 O -0.56 -13.13 15.52 5.56 0.09 -13.05 16 13 C -0.06 -0.96 3.26 -91.84 -0.30 -1.26 16 14 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 15 C -0.10 -1.25 6.33 -25.32 -0.16 -1.41 16 16 C -0.08 -0.76 6.77 -26.91 -0.18 -0.95 16 17 C -0.15 -1.82 6.16 -104.20 -0.64 -2.46 16 18 C -0.07 -0.71 10.17 -39.27 -0.40 -1.11 16 19 C -0.18 -1.83 10.12 -39.46 -0.40 -2.23 16 20 C 0.11 1.41 11.18 -17.62 -0.20 1.21 16 21 N -0.46 -7.58 9.59 -9.18 -0.09 -7.67 16 22 C 0.13 1.96 6.57 -82.03 -0.54 1.42 16 23 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.02 0.66 7.20 -51.93 -0.37 0.28 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 26 H 0.40 8.49 7.72 -40.82 -0.31 8.17 16 27 H 0.09 1.35 7.07 -51.93 -0.37 0.99 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 33 H 0.16 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 282.58 15.07 4.26 4.26 Total: -1.00 -34.15 282.58 -7.31 -41.45 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -3.99 Total: 4.04 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -3.36 Total: -4.35 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.36 Total: -49.79 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.15 -7.31 -41.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335088721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.215 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds