Wall clock time and date at job start Sun Mar 29 2020 22:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.36546 * 125.98938 * 330.36946 * 3 2 1 5 5 C 1.40471 * 106.70617 * 180.02562 * 4 3 2 6 6 C 1.35057 * 107.11325 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.61806 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47128 * 90.00053 * 7 6 5 9 9 C 1.46902 * 110.99917 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.46901 * 185.34670 * 9 8 7 11 11 C 1.50707 * 115.54837 * 65.05437 * 10 9 8 12 12 H 1.07998 * 119.99346 * 265.44103 * 11 10 9 13 13 C 1.37880 * 120.00059 * 85.44454 * 11 10 9 14 14 N 1.31513 * 120.00017 * 353.59431 * 13 11 10 15 15 Si 1.86796 * 119.99505 * 173.59882 * 13 11 10 16 16 H 1.48497 * 109.47638 * 60.00139 * 15 13 11 17 17 H 1.48505 * 109.46655 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47526 * 299.99253 * 15 13 11 19 19 C 1.52996 * 117.50325 * 279.38115 * 10 9 8 20 20 C 1.53002 * 117.49657 * 210.71812 * 10 9 8 21 21 O 1.34058 * 108.76036 * 0.24138 * 6 5 4 22 22 H 1.08000 * 126.64792 * 359.97438 * 4 3 2 23 23 H 1.08001 * 126.44945 * 180.02562 * 5 4 3 24 24 H 1.08994 * 109.46798 * 329.99646 * 7 6 5 25 25 H 1.09001 * 109.46514 * 210.00003 * 7 6 5 26 26 H 1.00895 * 110.99853 * 303.95218 * 8 7 6 27 27 H 1.08998 * 109.46844 * 305.35179 * 9 8 7 28 28 H 1.08998 * 109.46851 * 65.34543 * 9 8 7 29 29 H 0.96994 * 119.99624 * 180.02562 * 14 13 11 30 30 H 1.09006 * 117.49769 * 359.97438 * 19 10 9 31 31 H 1.09003 * 117.50105 * 145.02422 * 19 10 9 32 32 H 1.09006 * 117.49920 * 214.98226 * 20 10 9 33 33 H 1.08993 * 117.50367 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3709 -0.9594 0.5462 5 6 4.6966 -0.5552 0.3174 6 6 4.6449 0.6183 -0.3490 7 6 5.8355 1.4222 -0.8043 8 7 6.2236 0.9995 -2.1566 9 6 7.3834 1.7640 -2.6346 10 6 7.6747 1.3921 -4.0898 11 6 6.6062 1.7692 -5.0834 12 1 5.8527 1.0488 -5.3654 13 6 6.5908 3.0340 -5.6323 14 7 7.4285 3.9498 -5.1976 15 14 5.3797 3.4465 -6.9934 16 1 3.9933 3.2536 -6.4977 17 1 5.5643 4.8604 -7.4083 18 1 5.6185 2.5539 -8.1559 19 6 8.4541 0.1008 -4.3466 20 6 9.1298 1.4579 -4.5580 21 8 3.3600 0.9531 -0.5337 22 1 3.0490 -1.8553 1.0562 23 1 5.5893 -1.0835 0.6179 24 1 6.6676 1.2586 -0.1196 25 1 5.5764 2.4809 -0.8149 26 1 6.4064 0.0077 -2.1869 27 1 7.1680 2.8304 -2.5681 28 1 8.2517 1.5296 -2.0188 29 1 7.4174 4.8395 -5.5836 30 1 8.7597 -0.4837 -3.4787 31 1 8.1943 -0.4758 -5.2344 32 1 9.3143 1.7737 -5.5849 33 1 9.8795 1.7666 -3.8295 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336659586.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:54 Heat of formation + Delta-G solvation = 77.034247 kcal Electronic energy + Delta-G solvation = -16717.009045 eV Core-core repulsion = 13938.836537 eV Total energy + Delta-G solvation = -2778.172507 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.76694 -37.19380 -36.74980 -34.81972 -33.20230 -31.84625 -30.51685 -26.86109 -25.37398 -23.50313 -22.35042 -21.30229 -20.94436 -19.39155 -19.04666 -16.59201 -16.42588 -15.53315 -14.69087 -14.40104 -14.33335 -13.98603 -13.90869 -13.44624 -13.37003 -13.19103 -13.05629 -12.71041 -12.51908 -11.61968 -11.51241 -11.25991 -10.90140 -10.70906 -10.46338 -10.19793 -10.13704 -9.52298 -8.84458 -8.63597 -8.38304 -8.08355 -7.74343 -5.96452 -3.97818 0.91316 1.89536 2.24228 2.88999 3.17747 3.37499 3.41184 3.45477 3.96341 4.48156 4.61635 4.72574 4.91048 5.31839 5.35660 5.41417 5.47214 5.55043 5.69058 5.82438 6.10335 6.24877 6.25195 6.42900 6.53741 6.70331 6.78849 6.91315 7.09730 7.15820 7.44039 7.48301 7.76498 7.95981 7.98656 8.53258 9.01390 9.65895 11.13407 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.021117 B = 0.005662 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.656952 B = 4944.304079 C = 5858.145755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C 0.298 3.702 3 C 0.021 3.979 4 C -0.115 4.115 5 C -0.222 4.222 6 C 0.064 3.936 7 C 0.126 3.874 8 N -0.665 5.665 9 C 0.107 3.893 10 C 0.051 3.949 11 C -0.471 4.471 12 H 0.059 0.941 13 C 0.068 3.932 14 N -0.886 5.886 15 Si 0.887 3.113 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.279 1.279 19 C -0.215 4.215 20 C -0.157 4.157 21 O -0.142 6.142 22 H 0.160 0.840 23 H 0.159 0.841 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.336 0.664 27 H 0.080 0.920 28 H 0.000 1.000 29 H 0.258 0.742 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 -7.361 11.728 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.070 5.070 2 C -0.017 4.017 3 C -0.032 4.032 4 C -0.138 4.138 5 C -0.242 4.242 6 C 0.009 3.991 7 C -0.003 4.003 8 N -0.296 5.296 9 C -0.020 4.020 10 C 0.050 3.950 11 C -0.509 4.509 12 H 0.077 0.923 13 C -0.133 4.133 14 N -0.524 5.524 15 Si 0.715 3.285 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.204 1.204 19 C -0.252 4.252 20 C -0.195 4.195 21 O -0.035 6.035 22 H 0.178 0.822 23 H 0.177 0.823 24 H 0.080 0.920 25 H 0.112 0.888 26 H 0.154 0.846 27 H 0.099 0.901 28 H 0.018 0.982 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.483 -6.441 11.224 13.401 hybrid contribution 0.583 -0.178 -0.222 0.649 sum -2.900 -6.619 11.001 13.163 Atomic orbital electron populations 1.81309 1.10660 1.06403 1.08641 1.23610 0.89739 0.94532 0.93863 1.16451 0.84384 0.93363 1.08994 1.21835 0.92089 0.99226 1.00628 1.21564 0.98106 0.97677 1.06857 1.22995 0.82527 0.96225 0.97306 1.20546 0.88889 0.99093 0.91767 1.60280 1.41492 1.08983 1.18845 1.21609 0.86949 0.98484 0.95000 1.18790 0.91051 0.93436 0.91677 1.20266 1.11044 0.97426 1.22180 0.92296 1.24920 0.95525 0.96265 0.96631 1.69983 1.37284 1.03398 1.41730 0.86741 0.81961 0.77078 0.82689 1.20235 1.21510 1.20431 1.23006 1.09511 0.91650 1.01083 1.22524 0.97320 0.98547 1.01101 1.84142 1.16467 1.41771 1.61148 0.82215 0.82333 0.92039 0.88833 0.84613 0.90133 0.98171 0.93229 0.92127 0.90475 0.90017 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.70 18.54 41.84 0.78 -4.92 16 2 C 0.30 3.91 15.89 -22.47 -0.36 3.55 16 3 C 0.02 0.26 7.08 -38.27 -0.27 -0.01 16 4 C -0.11 -1.14 10.84 -39.35 -0.43 -1.57 16 5 C -0.22 -2.29 10.77 -39.87 -0.43 -2.72 16 6 C 0.06 0.83 6.83 -35.44 -0.24 0.58 16 7 C 0.13 1.73 6.20 -4.98 -0.03 1.70 16 8 N -0.66 -11.65 6.36 -115.06 -0.73 -12.38 16 9 C 0.11 2.18 5.51 -3.83 -0.02 2.16 16 10 C 0.05 1.19 1.55 -155.66 -0.24 0.95 16 11 C -0.47 -12.51 8.74 -34.44 -0.30 -12.81 16 12 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 13 C 0.07 1.85 5.39 -17.82 -0.10 1.76 16 14 N -0.89 -24.59 12.92 55.43 0.72 -23.87 16 15 Si 0.89 21.34 29.54 -169.99 -5.02 16.31 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 C -0.22 -4.41 9.96 -26.69 -0.27 -4.67 16 20 C -0.16 -3.51 9.41 -26.69 -0.25 -3.77 16 21 O -0.14 -2.08 10.67 4.77 0.05 -2.03 16 22 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 23 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.34 5.42 8.78 -39.29 -0.34 5.07 16 27 H 0.08 1.84 8.13 -51.93 -0.42 1.42 16 28 H 0.00 0.00 8.09 -51.93 -0.42 -0.42 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 303.60 15.07 4.58 4.58 Total: -1.00 -28.77 303.60 -6.68 -35.46 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -4.11 Total: 1.72 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -2.93 Total: -14.86 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.76 Total: -41.18 kcal Atomic # 8 Polarization: -2.08 SS G_CDS: 0.05 Total: -2.03 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.77 -6.68 -35.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336659586.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.490 kcal (2) G-P(sol) polarization free energy of solvation -28.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds