Wall clock time and date at job start Sun Mar 29 2020 22:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00016 * 179.97438 * 10 9 7 12 12 O 1.21578 * 120.00178 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.47021 * 125.65050 * 0.02562 * 13 11 10 15 15 C 1.54323 * 107.27485 * 181.02498 * 14 13 11 16 16 C 1.55158 * 102.93772 * 22.19440 * 15 14 13 17 17 F 1.39899 * 111.00654 * 82.57490 * 16 15 14 18 18 C 1.53003 * 111.00429 * 206.38672 * 16 15 14 19 19 O 1.42896 * 109.47594 * 179.97438 * 18 16 15 20 20 C 1.47424 * 125.64941 * 179.71825 * 13 11 10 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 0.97001 * 120.00220 * 0.02562 * 10 9 7 25 25 H 1.09009 * 109.88002 * 300.44413 * 14 13 11 26 26 H 1.09003 * 109.88303 * 61.60415 * 14 13 11 27 27 H 1.08994 * 110.72165 * 140.55226 * 15 14 13 28 28 H 1.08995 * 110.72034 * 263.82919 * 15 14 13 29 29 H 1.09002 * 109.47219 * 300.00358 * 18 16 15 30 30 H 1.08999 * 109.47041 * 59.99831 * 18 16 15 31 31 H 0.96698 * 114.00005 * 179.97438 * 19 18 16 32 32 H 1.08997 * 110.36836 * 274.74918 * 20 13 11 33 33 H 1.09002 * 110.36400 * 37.06953 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5584 -5.1056 0.0000 13 7 2.6295 -5.9078 0.0005 14 6 4.0944 -5.7828 0.0011 15 6 4.6763 -7.2119 -0.0248 16 6 3.5099 -8.0514 -0.6097 17 9 3.4902 -7.9777 -2.0066 18 6 3.5922 -9.5056 -0.1413 19 8 2.5048 -10.2475 -0.6973 20 6 2.2773 -7.3394 0.0070 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 3.1567 -3.4355 -0.0002 25 1 4.4200 -5.2338 -0.8826 26 1 4.4220 -5.2654 0.9029 27 1 5.5502 -7.2607 -0.6744 28 1 4.9244 -7.5456 0.9827 29 1 4.5357 -9.9407 -0.4711 30 1 3.5367 -9.5406 0.9467 31 1 2.4939 -11.1802 -0.4423 32 1 2.1083 -7.6838 1.0272 33 1 1.3927 -7.5151 -0.6051 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338745135.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:40 Heat of formation + Delta-G solvation = -156.532882 kcal Electronic energy + Delta-G solvation = -18072.622524 eV Core-core repulsion = 14853.552561 eV Total energy + Delta-G solvation = -3219.069963 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.117 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.71288 -41.15523 -38.71164 -37.35822 -36.19723 -34.43079 -32.77656 -30.42256 -29.34899 -26.89292 -24.70440 -23.87258 -21.56211 -21.15220 -19.70209 -18.37439 -18.02384 -17.80844 -17.14629 -16.74920 -16.49880 -16.26118 -15.90487 -15.15999 -15.03615 -14.75514 -14.29719 -14.10555 -14.00779 -13.91450 -13.54046 -13.08276 -12.92735 -12.67679 -12.43417 -12.23435 -11.93381 -11.74456 -11.51870 -11.32388 -10.98270 -10.80647 -10.12183 -9.48802 -8.28932 -6.46452 1.42867 1.48555 1.55442 1.62036 2.11374 2.38505 2.81714 3.05744 3.21069 3.26787 3.33680 3.56151 4.03246 4.11255 4.16711 4.44791 4.55224 4.59543 4.61624 4.80420 4.86607 5.01171 5.13717 5.22606 5.26441 5.45448 5.66183 5.81693 6.10978 6.64112 6.90672 7.09968 7.23469 7.60746 8.83499 Molecular weight = 246.12amu Principal moments of inertia in cm(-1) A = 0.051079 B = 0.004518 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.034985 B = 6195.741109 C = 6511.371221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.990 3.010 4 H -0.285 1.285 5 H -0.259 1.259 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.717 5.717 11 C 0.706 3.294 12 O -0.649 6.649 13 N -0.642 5.642 14 C 0.086 3.914 15 C -0.125 4.125 16 C 0.099 3.901 17 F -0.213 7.213 18 C 0.071 3.929 19 O -0.595 6.595 20 C 0.107 3.893 21 H 0.270 0.730 22 H -0.013 1.013 23 H -0.017 1.017 24 H 0.404 0.596 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.121 0.879 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.404 0.596 32 H 0.100 0.900 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.060 -18.705 2.740 24.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.812 3.188 4 H -0.210 1.210 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.371 5.371 11 C 0.408 3.592 12 O -0.532 6.532 13 N -0.381 5.381 14 C -0.036 4.036 15 C -0.163 4.163 16 C 0.080 3.920 17 F -0.194 7.194 18 C -0.007 4.007 19 O -0.405 6.405 20 C -0.017 4.017 21 H 0.078 0.922 22 H 0.005 0.995 23 H 0.000 1.000 24 H 0.239 0.761 25 H 0.086 0.914 26 H 0.111 0.889 27 H 0.139 0.861 28 H 0.154 0.846 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.256 0.744 32 H 0.118 0.882 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.848 -18.079 2.444 23.522 hybrid contribution -0.053 0.532 -0.121 0.548 sum 14.795 -17.547 2.324 23.069 Atomic orbital electron populations 1.70149 1.08382 1.28735 1.49706 1.26109 0.95798 1.03975 0.93675 0.85141 0.77851 0.76238 0.79557 1.21015 1.18389 1.18691 1.21541 0.94294 0.90285 1.53345 0.89759 1.18453 0.88106 0.83310 0.93929 1.45293 1.10944 1.03445 1.77423 1.15846 0.84167 0.81143 0.78090 1.90831 1.16503 1.84687 1.61179 1.47543 1.07116 1.04916 1.78513 1.22360 0.78023 0.99903 1.03303 1.23256 0.96593 0.90818 1.05612 1.22449 0.96777 0.97190 0.75618 1.92846 1.97367 1.97570 1.31581 1.22662 0.91203 0.87447 0.99399 1.86519 1.50057 1.27905 1.75986 1.22715 0.97864 0.78959 1.02139 0.92160 0.99483 0.99954 0.76051 0.91370 0.88869 0.86099 0.84583 0.89246 0.88312 0.74428 0.88193 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.99 42.78 29.54 68.60 2.03 44.81 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.56 -31.23 9.28 25.60 0.24 -30.99 16 8 H 0.08 4.24 7.60 -2.91 -0.02 4.22 16 9 C 0.29 16.61 5.43 85.63 0.46 17.07 16 10 N -0.72 -33.58 5.51 -482.30 -2.66 -36.23 16 11 C 0.71 33.02 8.49 179.05 1.52 34.54 16 12 O -0.65 -37.09 16.60 -3.96 -0.07 -37.16 16 13 N -0.64 -21.75 3.32 -829.31 -2.76 -24.50 16 14 C 0.09 1.88 6.15 86.73 0.53 2.41 16 15 C -0.13 -1.61 6.23 31.78 0.20 -1.41 16 16 C 0.10 2.01 1.37 -9.32 -0.01 1.99 16 17 F -0.21 -6.12 16.95 44.97 0.76 -5.36 16 18 C 0.07 0.85 6.30 71.98 0.45 1.31 16 19 O -0.59 -10.02 13.47 -148.98 -2.01 -12.03 16 20 C 0.11 3.09 6.09 86.93 0.53 3.62 16 21 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 22 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 23 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 24 H 0.40 15.71 7.31 -92.71 -0.68 15.03 16 25 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.14 0.75 8.04 -2.39 -0.02 0.74 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 0.60 8.07 -2.39 -0.02 0.58 16 31 H 0.40 2.34 9.12 -74.06 -0.68 1.66 16 32 H 0.10 2.42 7.99 -2.39 -0.02 2.40 16 33 H 0.05 1.88 8.03 -2.39 -0.02 1.87 16 Total: -1.00 -85.42 288.10 -0.24 -85.67 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -0.22 Total: 12.72 kcal Atomic # 6 Polarization: 24.85 SS G_CDS: 4.39 Total: 29.23 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -5.13 Total: -117.89 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -2.07 Total: -49.18 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.76 Total: -5.36 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -85.42 -0.24 -85.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338745135.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.866 kcal (2) G-P(sol) polarization free energy of solvation -85.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds