Wall clock time and date at job start Sun Mar 29 2020 22:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 S 1.81394 * 109.47383 * 179.97438 * 11 10 9 13 13 O 1.42105 * 109.46723 * 296.38510 * 12 11 10 14 14 C 1.81409 * 103.00116 * 179.97438 * 12 11 10 15 15 H 1.09004 * 109.52050 * 65.12276 * 14 12 11 16 16 C 1.53174 * 109.52324 * 185.31406 * 14 12 11 17 17 C 1.53175 * 109.03608 * 176.88810 * 16 14 12 18 18 C 1.53093 * 109.15918 * 303.01470 * 17 16 14 19 19 O 1.42903 * 109.41486 * 57.61406 * 18 17 16 20 20 C 1.42905 * 114.09469 * 298.83652 * 19 18 17 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 23 23 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 24 24 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 25 25 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 26 26 H 1.09005 * 109.46889 * 299.99675 * 11 10 9 27 27 H 1.09004 * 109.47073 * 59.99170 * 11 10 9 28 28 H 1.09008 * 109.54119 * 296.75330 * 16 14 12 29 29 H 1.08999 * 109.54402 * 57.01418 * 16 14 12 30 30 H 1.09000 * 109.52215 * 183.11464 * 17 16 14 31 31 H 1.08999 * 109.57608 * 62.95240 * 17 16 14 32 32 H 1.08995 * 109.48751 * 297.62839 * 18 17 16 33 33 H 1.09000 * 109.47868 * 177.59013 * 18 17 16 34 34 H 1.08996 * 109.48641 * 301.17642 * 20 19 18 35 35 H 1.09008 * 109.48796 * 181.14779 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 16 6.1561 -4.3469 -0.0023 13 8 5.7527 -4.9925 1.1976 14 6 7.9587 -4.1425 -0.0031 15 1 8.2723 -3.6724 0.9290 16 6 8.6292 -5.5131 -0.1376 17 6 10.1469 -5.3213 -0.2153 18 6 10.4769 -4.3954 -1.3891 19 8 9.7974 -3.1500 -1.2172 20 6 8.3731 -3.2621 -1.1850 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6797 -0.8895 23 1 3.8746 -0.6808 0.8905 24 1 3.6579 -3.1514 0.8880 25 1 3.6585 -3.1495 -0.8920 26 1 5.9148 -2.1220 -0.8910 27 1 5.9149 -2.1236 0.8890 28 1 8.3831 -6.1261 0.7295 29 1 8.2767 -6.0040 -1.0447 30 1 10.6288 -6.2872 -0.3668 31 1 10.5068 -4.8760 0.7122 32 1 10.1540 -4.8601 -2.3206 33 1 11.5523 -4.2210 -1.4232 34 1 8.0227 -3.7120 -2.1138 35 1 7.9329 -2.2713 -1.0722 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355460549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:32 Heat of formation + Delta-G solvation = -106.539892 kcal Electronic energy + Delta-G solvation = -15868.560085 eV Core-core repulsion = 13185.578406 eV Total energy + Delta-G solvation = -2682.981679 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.37491 -35.59334 -34.60950 -33.89617 -32.13379 -31.43540 -28.13186 -25.37477 -23.95241 -23.19125 -20.76191 -20.14517 -17.53284 -16.70671 -16.60829 -16.38952 -15.35402 -15.16683 -14.86080 -14.67817 -14.15019 -13.77530 -13.64729 -12.94512 -12.71622 -12.62376 -12.11322 -12.02726 -11.71213 -11.48546 -11.33606 -11.14618 -10.86684 -10.64148 -10.47028 -9.96689 -9.78441 -9.77385 -9.35711 -9.19183 -8.54923 -8.11670 -6.05162 -4.03512 1.52146 2.67314 3.29916 3.37217 3.39954 3.68790 3.81897 4.40400 4.44078 4.53230 4.63211 4.69336 4.97246 5.15318 5.25007 5.27660 5.31945 5.39285 5.43481 5.44726 5.53086 5.67743 5.77211 5.93348 6.03711 6.34609 6.47675 6.81990 6.91341 7.23822 7.37345 7.77153 8.52448 8.99808 9.57020 11.08303 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.039487 B = 0.004698 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.924959 B = 5959.170937 C = 6509.614968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.265 1.265 6 H -0.287 1.287 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.085 4.085 11 C -0.439 4.439 12 S 1.238 4.762 13 O -0.844 6.844 14 C -0.458 4.458 15 H 0.095 0.905 16 C -0.095 4.095 17 C -0.152 4.152 18 C 0.059 3.941 19 O -0.379 6.379 20 C 0.086 3.914 21 H 0.263 0.737 22 H 0.019 0.981 23 H 0.009 0.991 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.114 0.886 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.715 -10.031 -6.391 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.190 1.190 6 H -0.213 1.213 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.124 4.124 11 C -0.577 4.577 12 S 1.437 4.563 13 O -0.839 6.839 14 C -0.573 4.573 15 H 0.114 0.886 16 C -0.134 4.134 17 C -0.191 4.191 18 C -0.018 4.018 19 O -0.298 6.298 20 C 0.009 3.991 21 H 0.073 0.927 22 H 0.038 0.962 23 H 0.028 0.972 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.133 0.867 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 20.155 -10.607 -6.341 23.642 hybrid contribution 0.958 1.911 2.040 2.955 sum 21.112 -8.696 -4.301 23.235 Atomic orbital electron populations 1.69917 1.06291 1.26895 1.51073 1.25033 0.94735 0.99163 0.94543 0.86776 0.80351 0.83640 0.78492 1.20412 1.18979 1.21302 1.21162 0.89459 0.94594 1.50914 0.90889 1.19571 0.97101 0.91658 0.96376 1.21134 0.88079 1.01218 1.01963 1.27740 1.06098 1.16722 1.07179 1.70383 0.84154 0.89111 1.12626 1.93122 1.74924 1.64746 1.51140 1.28280 1.21755 1.02325 1.04984 0.88593 1.21203 0.95096 0.94049 1.03011 1.22154 0.96277 1.00428 1.00198 1.22585 0.97347 0.85097 0.96749 1.87957 1.18386 1.29661 1.93778 1.22311 0.81690 0.99952 0.95167 0.92711 0.96246 0.97221 0.92244 0.91432 0.86739 0.89888 0.91088 0.90487 0.90635 0.91280 0.92772 0.89072 0.91385 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.20 4.04 -27.88 -0.11 -0.31 16 10 C -0.09 -1.65 5.16 -26.73 -0.14 -1.79 16 11 C -0.44 -6.41 5.33 37.16 0.20 -6.21 16 12 S 1.24 15.07 12.67 -107.50 -1.36 13.71 16 13 O -0.84 -15.89 18.14 -35.23 -0.64 -16.53 16 14 C -0.46 -4.77 2.91 -26.59 -0.08 -4.85 16 15 H 0.10 1.19 8.14 -51.92 -0.42 0.76 16 16 C -0.10 -0.85 5.32 -26.55 -0.14 -1.00 16 17 C -0.15 -1.21 6.14 -26.59 -0.16 -1.37 16 18 C 0.06 0.46 6.84 37.21 0.25 0.72 16 19 O -0.38 -4.08 10.77 -35.23 -0.38 -4.46 16 20 C 0.09 0.79 5.81 37.21 0.22 1.01 16 21 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 22 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 23 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.11 1.33 6.97 -51.92 -0.36 0.96 16 27 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 28 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.89 6.67 -51.92 -0.35 0.55 16 LS Contribution 294.70 15.07 4.44 4.44 Total: -1.00 -36.77 294.70 -7.94 -44.71 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -5.71 Total: -4.44 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: -0.39 Total: -27.33 kcal Atomic # 7 Polarization: -28.04 SS G_CDS: 0.77 Total: -27.27 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -1.02 Total: -20.99 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Atomic # 16 Polarization: 15.07 SS G_CDS: -1.36 Total: 13.71 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -36.77 -7.94 -44.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355460549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.827 kcal (2) G-P(sol) polarization free energy of solvation -36.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds