Wall clock time and date at job start Sun Mar 29 2020 22:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 S 1.81394 * 109.47383 * 179.97438 * 11 10 9 13 13 O 1.42099 * 109.47421 * 63.61154 * 12 11 10 14 14 C 1.81409 * 103.00116 * 179.97438 * 12 11 10 15 15 H 1.09004 * 109.52050 * 65.12276 * 14 12 11 16 16 C 1.53174 * 109.52324 * 185.31406 * 14 12 11 17 17 C 1.53175 * 109.03608 * 176.88810 * 16 14 12 18 18 C 1.53093 * 109.15918 * 303.01470 * 17 16 14 19 19 O 1.42903 * 109.41486 * 57.61406 * 18 17 16 20 20 C 1.42905 * 114.09469 * 298.83652 * 19 18 17 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 23 23 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 24 24 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 25 25 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 26 26 H 1.09005 * 109.46889 * 299.99675 * 11 10 9 27 27 H 1.09004 * 109.47073 * 59.99170 * 11 10 9 28 28 H 1.09008 * 109.54119 * 296.75330 * 16 14 12 29 29 H 1.08999 * 109.54402 * 57.01418 * 16 14 12 30 30 H 1.09000 * 109.52215 * 183.11464 * 17 16 14 31 31 H 1.08999 * 109.57608 * 62.95240 * 17 16 14 32 32 H 1.08995 * 109.48751 * 297.62839 * 18 17 16 33 33 H 1.09000 * 109.47868 * 177.59013 * 18 17 16 34 34 H 1.08996 * 109.48641 * 301.17642 * 20 19 18 35 35 H 1.09008 * 109.48796 * 181.14779 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 16 6.1561 -4.3469 -0.0023 13 8 5.7526 -4.9914 -1.2028 14 6 7.9587 -4.1425 -0.0031 15 1 8.2723 -3.6724 0.9290 16 6 8.6292 -5.5131 -0.1376 17 6 10.1469 -5.3213 -0.2153 18 6 10.4769 -4.3954 -1.3891 19 8 9.7974 -3.1500 -1.2172 20 6 8.3731 -3.2621 -1.1850 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6797 -0.8895 23 1 3.8746 -0.6808 0.8905 24 1 3.6579 -3.1514 0.8880 25 1 3.6585 -3.1495 -0.8920 26 1 5.9148 -2.1220 -0.8910 27 1 5.9149 -2.1236 0.8890 28 1 8.3831 -6.1261 0.7295 29 1 8.2767 -6.0040 -1.0447 30 1 10.6288 -6.2872 -0.3668 31 1 10.5068 -4.8760 0.7122 32 1 10.1540 -4.8601 -2.3206 33 1 11.5523 -4.2210 -1.4232 34 1 8.0227 -3.7120 -2.1138 35 1 7.9329 -2.2713 -1.0722 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355460550.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:34 Heat of formation + Delta-G solvation = -106.388738 kcal Electronic energy + Delta-G solvation = -15928.609953 eV Core-core repulsion = 13245.634828 eV Total energy + Delta-G solvation = -2682.975125 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.36834 -35.57184 -34.60271 -33.87813 -32.13196 -31.45700 -28.12898 -25.41961 -23.92702 -23.18058 -20.65879 -20.15051 -17.59522 -16.69630 -16.61498 -16.41060 -15.43490 -15.12406 -14.84461 -14.67253 -14.14766 -13.71777 -13.44833 -12.99130 -12.82604 -12.66137 -12.09636 -12.03702 -11.59000 -11.39543 -11.35752 -11.16226 -10.84784 -10.68336 -10.44363 -9.96565 -9.87531 -9.77103 -9.34444 -9.18960 -8.54877 -8.08256 -6.05153 -4.03471 1.55443 2.67810 3.29277 3.37188 3.40716 3.67990 3.85520 4.41741 4.44134 4.49638 4.61485 4.71063 4.99230 5.14999 5.26514 5.28728 5.34307 5.40399 5.44611 5.45430 5.56514 5.65786 5.73391 5.96089 6.04292 6.34986 6.48176 6.82040 6.89573 7.24269 7.37538 7.77310 8.52482 8.99851 9.57071 11.08327 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.042122 B = 0.004673 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.581781 B = 5990.801277 C = 6459.669351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.267 1.267 6 H -0.288 1.288 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.085 4.085 11 C -0.438 4.438 12 S 1.238 4.762 13 O -0.844 6.844 14 C -0.454 4.454 15 H 0.129 0.871 16 C -0.099 4.099 17 C -0.150 4.150 18 C 0.057 3.943 19 O -0.379 6.379 20 C 0.068 3.932 21 H 0.263 0.737 22 H 0.014 0.986 23 H 0.015 0.985 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.735 -10.079 3.581 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.192 1.192 6 H -0.214 1.214 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.124 4.124 11 C -0.577 4.577 12 S 1.438 4.562 13 O -0.839 6.839 14 C -0.569 4.569 15 H 0.147 0.853 16 C -0.137 4.137 17 C -0.189 4.189 18 C -0.020 4.020 19 O -0.297 6.297 20 C -0.010 4.010 21 H 0.073 0.927 22 H 0.032 0.968 23 H 0.033 0.967 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.133 0.867 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 20.176 -10.655 3.569 23.094 hybrid contribution 0.932 1.935 -1.783 2.792 sum 21.108 -8.720 1.785 22.908 Atomic orbital electron populations 1.69917 1.06293 1.26895 1.51080 1.25034 0.94734 0.99165 0.94547 0.86775 0.80331 0.83638 0.78512 1.20173 1.19155 1.21371 1.21164 0.89471 0.94587 1.50902 0.90899 1.19569 0.97088 0.91682 0.96365 1.21130 0.88124 1.01187 1.01936 1.27726 1.06046 1.16721 1.07212 1.70435 0.84136 0.89082 1.12569 1.93114 1.75068 1.64707 1.51008 1.28371 1.21468 1.01958 1.05132 0.85253 1.21243 0.95108 0.94203 1.03131 1.22124 0.96342 1.00298 1.00115 1.22592 0.97268 0.85199 0.96915 1.87925 1.18229 1.29763 1.93825 1.22712 0.82140 1.00175 0.95930 0.92714 0.96788 0.96705 0.91508 0.92214 0.89904 0.86697 0.90211 0.91318 0.90727 0.90718 0.93380 0.88923 0.92858 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.20 4.04 -27.88 -0.11 -0.31 16 10 C -0.08 -1.64 5.16 -26.73 -0.14 -1.78 16 11 C -0.44 -6.32 5.33 37.16 0.20 -6.12 16 12 S 1.24 14.64 12.68 -107.50 -1.36 13.27 16 13 O -0.84 -15.25 18.12 -35.23 -0.64 -15.89 16 14 C -0.45 -4.57 2.91 -26.59 -0.08 -4.64 16 15 H 0.13 1.02 8.14 -51.92 -0.42 0.60 16 16 C -0.10 -0.90 5.31 -26.55 -0.14 -1.04 16 17 C -0.15 -1.21 6.14 -26.59 -0.16 -1.38 16 18 C 0.06 0.55 6.84 37.21 0.25 0.81 16 19 O -0.38 -4.81 10.77 -35.23 -0.38 -5.19 16 20 C 0.07 0.84 5.81 37.21 0.22 1.06 16 21 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 22 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 23 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.08 1.26 6.97 -51.92 -0.36 0.90 16 27 H 0.11 1.34 8.14 -51.92 -0.42 0.92 16 28 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.19 6.67 -51.92 -0.35 0.84 16 LS Contribution 294.68 15.07 4.44 4.44 Total: -1.00 -36.25 294.68 -7.94 -44.19 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -5.71 Total: -3.79 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: -0.39 Total: -26.92 kcal Atomic # 7 Polarization: -28.05 SS G_CDS: 0.77 Total: -27.28 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -1.02 Total: -21.07 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Atomic # 16 Polarization: 14.64 SS G_CDS: -1.36 Total: 13.27 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -36.25 -7.94 -44.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355460550.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.197 kcal (2) G-P(sol) polarization free energy of solvation -36.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds