Wall clock time and date at job start Sun Mar 29 2020 22:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 S 1.81394 * 109.47383 * 179.97438 * 11 10 9 13 13 O 1.42099 * 109.47421 * 63.61154 * 12 11 10 14 14 C 1.81409 * 103.00116 * 179.97438 * 12 11 10 15 15 H 1.09004 * 109.52050 * 65.12276 * 14 12 11 16 16 C 1.53174 * 109.52324 * 185.31406 * 14 12 11 17 17 C 1.53175 * 109.03608 * 176.88810 * 16 14 12 18 18 C 1.53093 * 109.15918 * 303.01470 * 17 16 14 19 19 O 1.42903 * 109.41486 * 57.61406 * 18 17 16 20 20 C 1.42905 * 114.09469 * 298.83652 * 19 18 17 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 23 23 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 24 24 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 25 25 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 26 26 H 1.09005 * 109.46889 * 299.99675 * 11 10 9 27 27 H 1.09004 * 109.47073 * 59.99170 * 11 10 9 28 28 H 1.09008 * 109.54119 * 296.75330 * 16 14 12 29 29 H 1.08999 * 109.54402 * 57.01418 * 16 14 12 30 30 H 1.09000 * 109.52215 * 183.11464 * 17 16 14 31 31 H 1.08999 * 109.57608 * 62.95240 * 17 16 14 32 32 H 1.08995 * 109.48751 * 297.62839 * 18 17 16 33 33 H 1.09000 * 109.47868 * 177.59013 * 18 17 16 34 34 H 1.08996 * 109.48641 * 301.17642 * 20 19 18 35 35 H 1.09008 * 109.48796 * 181.14779 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 16 6.1561 -4.3469 -0.0023 13 8 5.7526 -4.9914 -1.2028 14 6 7.9587 -4.1425 -0.0031 15 1 8.2723 -3.6724 0.9290 16 6 8.6292 -5.5131 -0.1376 17 6 10.1469 -5.3213 -0.2153 18 6 10.4769 -4.3954 -1.3891 19 8 9.7974 -3.1500 -1.2172 20 6 8.3731 -3.2621 -1.1850 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6797 -0.8895 23 1 3.8746 -0.6808 0.8905 24 1 3.6579 -3.1514 0.8880 25 1 3.6585 -3.1495 -0.8920 26 1 5.9148 -2.1220 -0.8910 27 1 5.9149 -2.1236 0.8890 28 1 8.3831 -6.1261 0.7295 29 1 8.2767 -6.0040 -1.0447 30 1 10.6288 -6.2872 -0.3668 31 1 10.5068 -4.8760 0.7122 32 1 10.1540 -4.8601 -2.3206 33 1 11.5523 -4.2210 -1.4232 34 1 8.0227 -3.7120 -2.1138 35 1 7.9329 -2.2713 -1.0722 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355460550.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:33 Heat of formation + Delta-G solvation = -133.468362 kcal Electronic energy + Delta-G solvation = -15929.784213 eV Core-core repulsion = 13245.634828 eV Total energy + Delta-G solvation = -2684.149385 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.19984 -36.83511 -36.34677 -34.67914 -34.15694 -32.29223 -29.90324 -26.32648 -24.97783 -24.66307 -22.05973 -21.26267 -19.02616 -18.46261 -17.49273 -17.30754 -16.59738 -16.27682 -16.10521 -15.82808 -15.65779 -14.86579 -14.64338 -14.33413 -14.18733 -13.83059 -13.59334 -13.33579 -12.88681 -12.68573 -12.47701 -12.21500 -12.15028 -11.99303 -11.81973 -11.53706 -11.46171 -11.35435 -10.78602 -10.77021 -10.57517 -9.16344 -8.30362 -6.35062 0.55616 1.34666 1.37835 1.49224 1.69160 2.35530 2.81144 2.87246 3.04904 3.58914 3.66940 3.93413 4.01558 4.02596 4.13692 4.17296 4.37289 4.49531 4.56981 4.64392 4.77986 4.80407 4.88108 5.01676 5.02812 5.04583 5.09247 5.28219 5.46305 5.54368 5.65439 6.05034 6.27110 6.73332 7.29718 8.86716 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.042122 B = 0.004673 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.581781 B = 5990.801277 C = 6459.669351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.256 1.256 5 H -0.252 1.252 6 H -0.287 1.287 7 C -0.539 4.539 8 H 0.030 0.970 9 C -0.009 4.009 10 C -0.085 4.085 11 C -0.442 4.442 12 S 1.298 4.702 13 O -0.911 6.911 14 C -0.441 4.441 15 H 0.167 0.833 16 C -0.107 4.107 17 C -0.144 4.144 18 C 0.045 3.955 19 O -0.395 6.395 20 C 0.062 3.938 21 H 0.267 0.733 22 H 0.008 0.992 23 H 0.037 0.963 24 H 0.082 0.918 25 H 0.027 0.973 26 H 0.073 0.927 27 H 0.154 0.846 28 H 0.111 0.889 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.038 0.962 33 H 0.113 0.887 34 H 0.026 0.974 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.899 -9.504 5.451 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.180 1.180 5 H -0.175 1.175 6 H -0.213 1.213 7 C -0.577 4.577 8 H 0.049 0.951 9 C -0.047 4.047 10 C -0.124 4.124 11 C -0.579 4.579 12 S 1.499 4.501 13 O -0.907 6.907 14 C -0.558 4.558 15 H 0.185 0.815 16 C -0.145 4.145 17 C -0.182 4.182 18 C -0.032 4.032 19 O -0.314 6.314 20 C -0.016 4.016 21 H 0.075 0.925 22 H 0.026 0.974 23 H 0.055 0.945 24 H 0.101 0.899 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.172 0.828 28 H 0.129 0.871 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.056 0.944 33 H 0.131 0.869 34 H 0.044 0.956 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 23.322 -10.094 5.438 25.988 hybrid contribution -0.013 1.658 -2.389 2.908 sum 23.310 -8.435 3.049 24.976 Atomic orbital electron populations 1.70082 1.08397 1.28219 1.52625 1.26080 0.95657 1.03721 0.94026 0.85602 0.79141 0.77890 0.79660 1.18038 1.17536 1.21267 1.21578 0.92421 0.93170 1.50551 0.95125 1.19554 0.93603 0.94779 0.96808 1.20984 0.91887 0.98233 1.01275 1.27717 1.02307 1.19205 1.08701 1.69666 0.84671 0.85980 1.09768 1.93001 1.77773 1.66495 1.53397 1.28305 1.18917 1.02728 1.05860 0.81534 1.21388 0.95989 0.93658 1.03466 1.22116 0.95355 1.00962 0.99806 1.22872 0.98116 0.84678 0.97498 1.87902 1.18020 1.31507 1.93936 1.22724 0.82555 1.00531 0.95779 0.92467 0.97399 0.94495 0.89914 0.95418 0.90854 0.82795 0.87085 0.93708 0.88734 0.89261 0.94359 0.86949 0.95573 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 2 C 0.00 0.10 5.47 84.66 0.46 0.56 16 3 Si 0.95 44.52 27.47 68.60 1.88 46.41 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 6 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.54 -31.77 9.66 25.60 0.25 -31.52 16 8 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 9 C -0.01 -0.42 4.04 29.85 0.12 -0.29 16 10 C -0.09 -3.26 5.16 30.59 0.16 -3.10 16 11 C -0.44 -11.82 5.33 71.98 0.38 -11.44 16 12 S 1.30 28.56 12.68 -56.49 -0.72 27.84 16 13 O -0.91 -33.37 18.12 -148.98 -2.70 -36.07 16 14 C -0.44 -7.54 2.91 30.68 0.09 -7.45 16 15 H 0.17 1.74 8.14 -2.39 -0.02 1.72 16 16 C -0.11 -1.64 5.31 30.71 0.16 -1.48 16 17 C -0.14 -1.82 6.14 30.68 0.19 -1.63 16 18 C 0.04 0.77 6.84 72.01 0.49 1.26 16 19 O -0.39 -9.26 10.77 -148.98 -1.60 -10.86 16 20 C 0.06 1.45 5.81 72.01 0.42 1.87 16 21 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 22 H 0.01 0.37 7.20 -2.38 -0.02 0.35 16 23 H 0.04 1.57 7.57 -2.39 -0.02 1.55 16 24 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 2.13 6.97 -2.39 -0.02 2.11 16 27 H 0.15 2.90 8.14 -2.39 -0.02 2.88 16 28 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 2.25 6.67 -2.38 -0.02 2.23 16 Total: -1.00 -82.18 294.68 0.88 -81.31 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 0.99 Total: 5.04 kcal Atomic # 6 Polarization: -55.95 SS G_CDS: 2.72 Total: -53.22 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.30 Total: -60.44 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -4.30 Total: -46.93 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.41 kcal Atomic # 16 Polarization: 28.56 SS G_CDS: -0.72 Total: 27.84 kcal Total: -82.18 0.88 -81.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355460550.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.161 kcal (2) G-P(sol) polarization free energy of solvation -82.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds