Wall clock time and date at job start Sun Mar 29 2020 22:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00244 * 2 1 4 4 H 1.48498 * 109.47325 * 269.99599 * 3 2 1 5 5 H 1.48495 * 109.47394 * 29.99766 * 3 2 1 6 6 H 1.48506 * 109.47207 * 150.00210 * 3 2 1 7 7 C 1.37878 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99938 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46885 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46835 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.47234 * 180.02562 * 11 10 9 13 13 O 1.42102 * 109.46583 * 63.61239 * 12 11 10 14 14 C 1.81393 * 103.00314 * 180.02562 * 12 11 10 15 15 H 1.08999 * 109.57310 * 295.15962 * 14 12 11 16 16 C 1.53178 * 109.52417 * 174.99866 * 14 12 11 17 17 C 1.53178 * 109.03511 * 183.11221 * 16 14 12 18 18 C 1.53093 * 109.16255 * 56.98447 * 17 16 14 19 19 O 1.42904 * 109.42351 * 302.38111 * 18 17 16 20 20 C 1.42930 * 114.08305 * 61.15476 * 19 18 17 21 21 H 0.97003 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46690 * 60.00630 * 9 7 2 23 23 H 1.08992 * 109.47028 * 299.99887 * 9 7 2 24 24 H 1.09000 * 109.46872 * 60.00827 * 10 9 7 25 25 H 1.08993 * 109.47095 * 300.00355 * 10 9 7 26 26 H 1.08996 * 109.46956 * 60.00290 * 11 10 9 27 27 H 1.09003 * 109.47458 * 300.00582 * 11 10 9 28 28 H 1.09002 * 109.54068 * 63.24631 * 16 14 12 29 29 H 1.08996 * 109.54450 * 302.98205 * 16 14 12 30 30 H 1.09000 * 109.52619 * 297.07706 * 17 16 14 31 31 H 1.08998 * 109.51869 * 176.88944 * 17 16 14 32 32 H 1.09002 * 109.48198 * 62.37219 * 18 17 16 33 33 H 1.08999 * 109.48029 * 182.39833 * 18 17 16 34 34 H 1.09003 * 109.47243 * 178.86599 * 20 19 18 35 35 H 1.08992 * 109.48518 * 58.83967 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0015 11 6 1.4800 -4.9871 0.0033 12 16 2.6587 -6.3660 0.0037 13 8 3.4199 -6.3379 1.2034 14 6 1.5804 -7.8247 0.0051 15 1 1.0126 -7.8582 0.9350 16 6 2.4326 -9.0914 -0.1202 17 6 1.5078 -10.3101 -0.1963 18 6 0.5458 -10.1382 -1.3747 19 8 -0.1938 -8.9264 -1.2115 20 6 0.6155 -7.7487 -1.1811 21 1 -0.4850 0.8401 -0.0004 22 1 0.6239 -2.5575 -0.8881 23 1 0.6246 -2.5563 0.8919 24 1 2.8723 -3.6041 0.8910 25 1 2.8711 -3.6048 -0.8890 26 1 0.8524 -5.0455 -0.8860 27 1 0.8542 -5.0442 0.8940 28 1 3.0829 -9.1808 0.7500 29 1 3.0377 -9.0357 -1.0251 30 1 0.9385 -10.3938 0.7295 31 1 2.1039 -11.2111 -0.3411 32 1 1.1135 -10.0952 -2.3042 33 1 -0.1428 -10.9825 -1.4080 34 1 -0.0229 -6.8716 -1.0748 35 1 1.1841 -7.6743 -2.1079 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355460551.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:35 Heat of formation + Delta-G solvation = -110.389724 kcal Electronic energy + Delta-G solvation = -15813.779982 eV Core-core repulsion = 13130.631361 eV Total energy + Delta-G solvation = -2683.148620 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.31460 -35.51923 -34.46877 -33.84034 -32.08434 -31.36196 -27.57678 -25.29911 -23.89383 -23.35727 -20.78114 -20.16014 -17.45137 -16.56185 -16.39191 -16.24248 -15.25549 -15.09530 -14.74914 -14.56438 -14.37768 -13.70228 -13.61985 -12.87776 -12.57739 -12.25346 -12.06318 -11.92828 -11.45240 -11.42989 -11.25713 -10.87073 -10.83130 -10.66958 -10.55324 -10.08139 -9.80452 -9.70383 -9.25263 -9.03273 -8.36128 -8.03474 -6.00990 -4.03724 1.60200 2.75427 3.32042 3.38331 3.42433 3.75076 3.88979 4.45812 4.46234 4.58430 4.68655 4.74814 5.02823 5.21254 5.30926 5.34681 5.40771 5.46405 5.51654 5.56989 5.59355 5.72627 5.82658 5.98644 6.17781 6.49324 6.67956 6.97373 7.03061 7.65009 7.77428 7.98257 8.39961 9.03197 9.60595 11.10268 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.048744 B = 0.004239 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.296688 B = 6603.044325 C = 7034.341835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.093 4.093 11 C -0.432 4.432 12 S 1.232 4.768 13 O -0.847 6.847 14 C -0.457 4.457 15 H 0.095 0.905 16 C -0.095 4.095 17 C -0.152 4.152 18 C 0.059 3.941 19 O -0.379 6.379 20 C 0.086 3.914 21 H 0.261 0.739 22 H 0.020 0.980 23 H 0.014 0.986 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.114 0.886 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.941 -19.948 -6.343 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.571 4.571 12 S 1.433 4.567 13 O -0.842 6.842 14 C -0.573 4.573 15 H 0.114 0.886 16 C -0.133 4.133 17 C -0.191 4.191 18 C -0.018 4.018 19 O -0.297 6.297 20 C 0.009 3.991 21 H 0.070 0.930 22 H 0.038 0.962 23 H 0.033 0.967 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.133 0.867 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.592 -19.835 -6.284 21.114 hybrid contribution -0.781 0.896 2.005 2.331 sum 2.811 -18.939 -4.279 19.618 Atomic orbital electron populations 1.69965 1.06088 1.26645 1.50822 1.25027 0.94859 0.99307 0.95258 0.86579 0.79877 0.83351 0.78133 1.20557 1.21246 1.19839 1.21274 0.93149 0.91031 1.50686 0.92538 1.19098 0.93800 0.90892 0.97390 1.21319 0.98957 0.91802 1.01117 1.27684 1.11500 1.10677 1.07252 1.70286 0.88156 0.85615 1.12684 1.93109 1.56015 1.83883 1.51229 1.28269 1.10036 1.13953 1.05001 0.88591 1.21203 0.96995 0.92195 1.02952 1.22157 0.98499 0.98209 1.00197 1.22579 0.94952 0.87537 0.96710 1.87967 1.33607 1.14300 1.93869 1.22321 0.93075 0.88665 0.95058 0.92981 0.96197 0.96725 0.92837 0.92054 0.86744 0.89903 0.91141 0.90546 0.91277 0.90686 0.92817 0.89101 0.87968 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 10 C -0.09 -1.89 5.16 -26.73 -0.14 -2.03 16 11 C -0.43 -6.80 5.34 37.16 0.20 -6.60 16 12 S 1.23 15.80 12.67 -107.50 -1.36 14.44 16 13 O -0.85 -16.41 18.14 -35.23 -0.64 -17.05 16 14 C -0.46 -5.06 2.91 -26.59 -0.08 -5.14 16 15 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 16 C -0.10 -0.90 5.32 -26.55 -0.14 -1.04 16 17 C -0.15 -1.27 6.14 -26.59 -0.16 -1.44 16 18 C 0.06 0.49 6.84 37.21 0.25 0.75 16 19 O -0.38 -4.30 10.77 -35.23 -0.38 -4.68 16 20 C 0.09 0.85 5.82 37.21 0.22 1.07 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.11 1.48 6.97 -51.93 -0.36 1.12 16 27 H 0.08 1.42 8.14 -51.92 -0.42 1.00 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.10 1.00 6.68 -51.93 -0.35 0.65 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 298.33 15.07 4.50 4.50 Total: -1.00 -36.28 298.33 -8.31 -44.60 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -5.75 Total: -4.66 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: -0.40 Total: -27.58 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -1.02 Total: -21.73 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 15.80 SS G_CDS: -1.36 Total: 14.44 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -36.28 -8.31 -44.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355460551.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.794 kcal (2) G-P(sol) polarization free energy of solvation -36.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds