Wall clock time and date at job start Sun Mar 29 2020 22:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99662 * 2 1 4 4 H 1.48498 * 109.46619 * 275.21812 * 3 2 1 5 5 H 1.48491 * 109.47259 * 35.22352 * 3 2 1 6 6 H 1.48501 * 109.46893 * 155.22606 * 3 2 1 7 7 C 1.38805 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00468 * 342.42499 * 7 2 1 9 9 N 1.36942 * 119.99955 * 162.42253 * 7 2 1 10 10 C 1.47215 * 121.31763 * 129.72646 * 9 7 2 11 11 C 1.52789 * 107.93612 * 115.90230 * 10 9 7 12 12 C 1.50598 * 110.85548 * 47.51494 * 11 10 9 13 13 C 1.38978 * 117.63387 * 160.08045 * 12 11 10 14 14 C 1.37908 * 120.57880 * 178.52217 * 13 12 11 15 15 C 1.38262 * 119.82991 * 0.29182 * 14 13 12 16 16 C 1.37956 * 119.71677 * 0.26074 * 15 14 13 17 17 C 1.37678 * 122.85047 * 339.71146 * 12 11 10 18 18 C 1.46936 * 121.63420 * 310.17181 * 9 7 2 19 19 H 1.08997 * 110.10738 * 104.26833 * 18 9 7 20 20 C 1.50695 * 108.86194 * 344.33639 * 18 9 7 21 21 N 1.34783 * 120.00043 * 145.91030 * 20 18 9 22 22 O 1.21280 * 120.00295 * 325.90528 * 20 18 9 23 23 H 0.97002 * 120.00483 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.77652 * 356.29438 * 10 9 7 25 25 H 1.09003 * 109.76860 * 235.51107 * 10 9 7 26 26 H 1.08997 * 109.19767 * 287.16384 * 11 10 9 27 27 H 1.09002 * 109.16499 * 167.84117 * 11 10 9 28 28 H 1.08002 * 119.70731 * 358.80615 * 13 12 11 29 29 H 1.08006 * 120.08144 * 180.26677 * 14 13 12 30 30 H 1.07998 * 120.13772 * 180.24157 * 15 14 13 31 31 H 1.07998 * 119.75188 * 179.97438 * 16 15 14 32 32 H 0.97001 * 119.99560 * 4.99644 * 21 20 18 33 33 H 0.97001 * 120.00063 * 185.00171 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3872 2.1101 -1.3943 5 1 1.5071 2.6183 0.8075 6 1 3.5985 1.4109 0.5867 7 6 2.0102 -1.2021 0.0005 8 1 1.5081 -2.1155 0.2834 9 7 3.3317 -1.2299 -0.3576 10 6 4.3393 -1.8933 0.4860 11 6 4.9160 -3.0668 -0.3045 12 6 5.2851 -2.6424 -1.7015 13 6 6.1878 -3.4362 -2.3990 14 6 6.5450 -3.1210 -3.6932 15 6 6.0065 -2.0027 -4.3024 16 6 5.1189 -1.2066 -3.6084 17 6 4.7629 -1.5197 -2.3034 18 6 3.8090 -0.5928 -1.5926 19 1 4.3182 0.3423 -1.3592 20 6 2.6268 -0.3103 -2.4835 21 7 2.6208 0.7856 -3.2679 22 8 1.6809 -1.0692 -2.4946 23 1 -0.4851 0.8400 -0.0004 24 1 3.8719 -2.2591 1.4003 25 1 5.1340 -1.1896 0.7336 26 1 4.1738 -3.8634 -0.3561 27 1 5.8056 -3.4382 0.2042 28 1 6.6097 -4.3101 -1.9249 29 1 7.2440 -3.7459 -4.2293 30 1 6.2798 -1.7535 -5.3170 31 1 4.6982 -0.3327 -4.0836 32 1 3.4059 1.3534 -3.3140 33 1 1.8313 1.0067 -3.7864 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362350124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:47 Heat of formation + Delta-G solvation = 27.733419 kcal Electronic energy + Delta-G solvation = -18555.746058 eV Core-core repulsion = 15775.435706 eV Total energy + Delta-G solvation = -2780.310352 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.93915 -38.05830 -35.67474 -32.96570 -32.58130 -31.67009 -30.38655 -28.84296 -25.83857 -23.80703 -22.29502 -21.76047 -20.04369 -19.10208 -17.27053 -16.51723 -16.15923 -15.70867 -15.02067 -14.80358 -14.43884 -13.97317 -13.55780 -13.32152 -12.89902 -12.75430 -12.50760 -12.33019 -11.80003 -11.71156 -11.25905 -11.10171 -10.71100 -10.55931 -10.42114 -9.94701 -9.68802 -9.14626 -8.85523 -8.41976 -8.11698 -8.06853 -6.65017 -5.91218 -3.45053 1.66964 1.71036 3.24925 3.43441 3.48116 3.70238 4.01011 4.38493 4.53792 4.91800 5.13813 5.19015 5.28536 5.34086 5.46690 5.65626 5.73276 5.88850 5.97983 6.02277 6.08229 6.14587 6.33514 6.40166 6.59663 6.75804 6.79452 6.82953 7.08197 7.33259 7.57420 8.02405 8.18929 8.52479 8.94079 9.29932 9.72123 10.17527 11.23483 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028689 B = 0.010622 C = 0.009030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.749359 B = 2635.426859 C = 3099.967514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.052 3.948 3 Si 0.847 3.153 4 H -0.263 1.263 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.253 4.253 8 H 0.073 0.927 9 N -0.586 5.586 10 C 0.145 3.855 11 C -0.103 4.103 12 C -0.049 4.049 13 C -0.128 4.128 14 C -0.127 4.127 15 C -0.130 4.130 16 C -0.122 4.122 17 C -0.073 4.073 18 C 0.180 3.820 19 H 0.052 0.948 20 C 0.516 3.484 21 N -0.873 5.873 22 O -0.468 6.468 23 H 0.260 0.740 24 H 0.076 0.924 25 H 0.030 0.970 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.388 0.612 33 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.301 -0.732 -6.208 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.150 4.150 3 Si 0.674 3.326 4 H -0.188 1.188 5 H -0.226 1.226 6 H -0.194 1.194 7 C -0.382 4.382 8 H 0.091 0.909 9 N -0.310 5.310 10 C 0.020 3.980 11 C -0.141 4.141 12 C -0.049 4.049 13 C -0.146 4.146 14 C -0.146 4.146 15 C -0.148 4.148 16 C -0.140 4.140 17 C -0.075 4.075 18 C 0.071 3.929 19 H 0.069 0.931 20 C 0.298 3.702 21 N -0.441 5.441 22 O -0.335 6.335 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.215 0.785 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 12.515 -1.303 -6.029 13.952 hybrid contribution 0.462 1.488 -0.400 1.608 sum 12.977 0.185 -6.429 14.484 Atomic orbital electron populations 1.69856 1.06023 1.26217 1.50100 1.25715 0.94992 0.97481 0.96820 0.87326 0.80752 0.85607 0.78916 1.18826 1.22566 1.19373 1.18421 0.83205 0.93556 1.42999 0.90920 1.44057 1.05150 1.65356 1.16481 1.21096 0.91362 0.91981 0.93556 1.21021 1.00324 1.00632 0.92142 1.19575 0.95088 0.93570 0.96707 1.21169 0.98841 0.99620 0.94938 1.20948 1.00681 0.97630 0.95298 1.20927 0.98373 0.95964 0.99517 1.21166 0.98306 1.00218 0.94343 1.20019 0.97088 0.96198 0.94166 1.19736 0.90824 0.94336 0.88039 0.93104 1.20144 0.88723 0.81046 0.80267 1.44129 1.19575 1.29660 1.50697 1.90788 1.34604 1.46084 1.62042 0.93014 0.90528 0.95184 0.90429 0.91569 0.86490 0.86631 0.86546 0.86462 0.78498 0.77674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.64 13.97 55.49 0.78 -26.86 16 2 C 0.05 1.53 3.95 -17.43 -0.07 1.46 16 3 Si 0.85 21.15 24.46 -169.99 -4.16 16.99 16 4 H -0.26 -5.88 5.46 56.52 0.31 -5.57 16 5 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.27 -6.61 7.10 56.52 0.40 -6.21 16 7 C -0.25 -7.31 7.89 -15.06 -0.12 -7.43 16 8 H 0.07 2.34 8.06 -52.49 -0.42 1.91 16 9 N -0.59 -14.31 2.26 -167.47 -0.38 -14.69 16 10 C 0.15 2.91 6.50 -3.76 -0.02 2.89 16 11 C -0.10 -1.77 5.87 -28.04 -0.16 -1.94 16 12 C -0.05 -0.88 5.76 -104.60 -0.60 -1.49 16 13 C -0.13 -1.92 9.59 -39.43 -0.38 -2.30 16 14 C -0.13 -1.75 10.04 -39.69 -0.40 -2.15 16 15 C -0.13 -1.85 10.05 -39.68 -0.40 -2.24 16 16 C -0.12 -2.01 9.08 -39.46 -0.36 -2.37 16 17 C -0.07 -1.41 5.43 -104.55 -0.57 -1.97 16 18 C 0.18 3.96 2.11 -69.94 -0.15 3.81 16 19 H 0.05 1.09 6.76 -51.93 -0.35 0.74 16 20 C 0.52 11.87 3.43 -10.99 -0.04 11.83 16 21 N -0.87 -15.67 6.58 31.22 0.21 -15.46 16 22 O -0.47 -13.17 15.08 5.56 0.08 -13.09 16 23 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 24 H 0.08 1.50 7.96 -51.93 -0.41 1.08 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 28 H 0.12 1.46 8.05 -52.49 -0.42 1.04 16 29 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.12 1.74 6.68 -52.49 -0.35 1.39 16 32 H 0.39 5.61 8.51 -40.82 -0.35 5.27 16 33 H 0.39 6.56 8.93 -40.82 -0.36 6.20 16 LS Contribution 265.49 15.07 4.00 4.00 Total: -1.00 -34.95 265.49 -6.75 -41.71 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -4.01 Total: 9.28 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -3.27 Total: -1.89 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.60 Total: -57.01 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.16 Total: 16.99 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.95 -6.75 -41.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362350124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.439 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds