Wall clock time and date at job start Sun Mar 29 2020 22:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00060 * 2 1 4 4 H 1.48496 * 109.47028 * 239.99980 * 3 2 1 5 5 H 1.48501 * 109.47112 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46864 * 120.00150 * 3 2 1 7 7 C 1.37880 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00530 * 175.74825 * 7 2 1 9 9 C 1.50704 * 119.99336 * 356.02622 * 7 2 1 10 10 C 1.52999 * 115.55164 * 39.65026 * 9 7 2 11 11 N 1.46503 * 109.47308 * 54.21855 * 10 9 7 12 12 C 1.34776 * 120.00271 * 185.00232 * 11 10 9 13 13 O 1.21513 * 119.99592 * 5.04497 * 12 11 10 14 14 C 1.48142 * 120.00277 * 185.04607 * 12 11 10 15 15 C 1.39825 * 120.92082 * 4.89158 * 14 12 11 16 16 C 1.38149 * 119.00091 * 179.79669 * 15 14 12 17 17 N 1.31816 * 120.89654 * 0.49460 * 16 15 14 18 18 C 1.31810 * 122.04642 * 359.72918 * 17 16 15 19 19 C 1.38153 * 120.89862 * 0.03155 * 18 17 16 20 20 C 1.52994 * 117.49734 * 253.93535 * 9 7 2 21 21 C 1.52992 * 60.00357 * 252.51606 * 20 9 7 22 22 H 0.97002 * 119.99957 * 4.99335 * 1 2 3 23 23 H 1.09000 * 109.47214 * 174.21778 * 10 9 7 24 24 H 1.09000 * 109.47063 * 294.21610 * 10 9 7 25 25 H 0.97004 * 119.99740 * 5.00077 * 11 10 9 26 26 H 1.08001 * 120.50098 * 359.97438 * 15 14 12 27 27 H 1.07991 * 119.55370 * 180.22480 * 16 15 14 28 28 H 1.08003 * 119.55487 * 180.02562 * 18 17 16 29 29 H 1.08004 * 120.49926 * 179.97438 * 19 18 17 30 30 H 1.09004 * 117.50104 * 0.02562 * 20 9 7 31 31 H 1.09007 * 117.49670 * 145.02451 * 20 9 7 32 32 H 1.09002 * 117.50281 * 252.51391 * 21 20 9 33 33 H 1.08994 * 117.51949 * 107.48401 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0823 -1.1953 -0.0699 9 6 1.2537 -2.4976 0.0893 10 6 -0.0473 -2.5665 -0.7130 11 7 0.2218 -2.2190 -2.1105 12 6 -0.7966 -2.1142 -2.9870 13 8 -1.9440 -2.2172 -2.6003 14 6 -0.5173 -1.8735 -4.4218 15 6 0.7947 -1.8529 -4.9048 16 6 1.0095 -1.6290 -6.2510 17 7 -0.0009 -1.4273 -7.0732 18 6 -1.2521 -1.4340 -6.6586 19 6 -1.5579 -1.6549 -5.3296 20 6 1.3048 -3.2520 1.4194 21 6 2.0781 -3.7808 0.2098 22 1 -0.4850 0.8369 -0.0731 23 1 -0.4529 -3.5769 -0.6614 24 1 -0.7688 -1.8636 -0.2963 25 1 1.1330 -2.0643 -2.4050 26 1 1.6276 -2.0124 -4.2360 27 1 2.0190 -1.6149 -6.6342 28 1 -2.0491 -1.2645 -7.3675 29 1 -2.5854 -1.6587 -4.9969 30 1 1.8812 -2.8053 2.2296 31 1 0.4113 -3.7975 1.7232 32 1 1.6935 -4.6742 -0.2822 33 1 3.1635 -3.6823 0.2237 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404148206.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:53 Heat of formation + Delta-G solvation = 24.086286 kcal Electronic energy + Delta-G solvation = -17417.555327 eV Core-core repulsion = 14637.086824 eV Total energy + Delta-G solvation = -2780.468503 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.21412 -38.45934 -36.70953 -33.37329 -32.34933 -32.13140 -31.07333 -26.49390 -25.53623 -23.82783 -23.14226 -21.32595 -19.98454 -19.38227 -17.82413 -16.43122 -16.08672 -15.52418 -14.94241 -14.90504 -14.55688 -14.42683 -13.70481 -13.64158 -13.53127 -12.95559 -12.53170 -11.83815 -11.60966 -11.50151 -11.10242 -10.83096 -10.58699 -10.32638 -9.89929 -9.68077 -9.67645 -9.19463 -9.11754 -9.02806 -8.89391 -8.36008 -7.98952 -6.07405 -4.26133 0.96224 1.18185 3.18910 3.27263 3.27700 3.41004 3.85035 4.14253 4.25224 4.47044 4.84261 4.88566 5.08902 5.17382 5.29405 5.41425 5.60923 5.81563 5.94136 6.01478 6.21850 6.27671 6.45316 6.53592 6.62118 6.68873 6.83034 7.01310 7.19686 7.44296 7.53268 7.88647 7.95576 8.23305 8.39273 8.74883 8.97116 9.38520 10.84823 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020778 B = 0.007493 C = 0.006553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.249961 B = 3736.021925 C = 4272.150931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.035 3.965 10 C 0.159 3.841 11 N -0.672 5.672 12 C 0.543 3.457 13 O -0.549 6.549 14 C -0.072 4.072 15 C -0.142 4.142 16 C 0.091 3.909 17 N -0.480 5.480 18 C 0.089 3.911 19 C -0.122 4.122 20 C -0.195 4.195 21 C -0.211 4.211 22 H 0.264 0.736 23 H 0.023 0.977 24 H 0.119 0.881 25 H 0.398 0.602 26 H 0.142 0.858 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.145 0.855 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.082 -3.083 -8.765 9.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.130 4.130 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.034 3.966 10 C 0.037 3.963 11 N -0.319 5.319 12 C 0.327 3.673 13 O -0.428 6.428 14 C -0.083 4.083 15 C -0.163 4.163 16 C -0.065 4.065 17 N -0.190 5.190 18 C -0.068 4.068 19 C -0.142 4.142 20 C -0.233 4.233 21 C -0.249 4.249 22 H 0.075 0.925 23 H 0.041 0.959 24 H 0.137 0.863 25 H 0.233 0.767 26 H 0.160 0.840 27 H 0.176 0.824 28 H 0.176 0.824 29 H 0.163 0.837 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.282 -2.890 -9.242 9.687 hybrid contribution 0.839 0.817 0.910 1.484 sum 1.121 -2.073 -8.332 8.659 Atomic orbital electron populations 1.69799 1.05762 1.27046 1.47709 1.24998 0.94842 0.99117 0.94041 0.86627 0.79583 0.82899 0.78767 1.20170 1.21192 1.20090 1.20446 0.92669 0.88497 1.52190 0.92068 1.19206 0.93183 0.90304 0.93908 1.21175 0.98870 0.97476 0.78792 1.45620 1.08962 1.66937 1.10355 1.18023 0.85779 0.78690 0.84787 1.90708 1.20906 1.51859 1.79356 1.20725 0.93944 0.98411 0.95238 1.22470 0.97040 0.99222 0.97536 1.22700 0.98379 0.95781 0.89682 1.67519 1.00233 1.11735 1.39504 1.22720 0.93779 0.96400 0.93894 1.22313 1.00826 0.97484 0.93621 1.22913 1.01026 1.06123 0.93256 1.22948 0.97935 0.99263 1.04720 0.92497 0.95923 0.86303 0.76659 0.84011 0.82386 0.82421 0.83680 0.90119 0.91421 0.91313 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.99 10.50 55.43 0.58 -22.40 16 2 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 3 Si 0.89 19.95 29.54 -169.99 -5.02 14.92 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.50 -12.38 8.39 -34.44 -0.29 -12.67 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.03 0.79 1.98 -155.66 -0.31 0.48 16 10 C 0.16 3.67 4.71 -4.04 -0.02 3.65 16 11 N -0.67 -13.96 5.29 -61.15 -0.32 -14.28 16 12 C 0.54 11.20 7.78 -12.19 -0.09 11.10 16 13 O -0.55 -13.05 16.44 5.35 0.09 -12.96 16 14 C -0.07 -1.21 5.91 -104.65 -0.62 -1.83 16 15 C -0.14 -2.02 9.60 -39.02 -0.37 -2.40 16 16 C 0.09 1.18 11.17 -17.59 -0.20 0.98 16 17 N -0.48 -6.69 10.34 -13.31 -0.14 -6.83 16 18 C 0.09 1.15 11.17 -17.59 -0.20 0.96 16 19 C -0.12 -1.82 9.68 -39.02 -0.38 -2.19 16 20 C -0.19 -4.15 9.95 -26.74 -0.27 -4.41 16 21 C -0.21 -4.22 9.92 -26.73 -0.27 -4.49 16 22 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 23 H 0.02 0.51 8.09 -51.93 -0.42 0.09 16 24 H 0.12 3.16 5.89 -51.93 -0.31 2.85 16 25 H 0.40 7.67 6.32 -40.82 -0.26 7.41 16 26 H 0.14 1.81 6.60 -52.49 -0.35 1.46 16 27 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 29 H 0.15 2.09 7.75 -52.48 -0.41 1.69 16 30 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 288.55 15.07 4.35 4.35 Total: -1.00 -28.81 288.55 -7.39 -36.19 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -3.82 Total: 10.03 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -3.10 Total: -9.02 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.12 Total: -43.52 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.81 -7.39 -36.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404148206.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.278 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds