Wall clock time and date at job start Sun Mar 29 2020 22:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86801 * 120.00154 * 2 1 4 4 H 1.48502 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46989 * 299.99590 * 3 2 1 6 6 H 1.48499 * 109.47092 * 59.99206 * 3 2 1 7 7 C 1.40050 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00194 * 180.02562 * 7 2 1 9 9 C 1.46377 * 119.99975 * 0.02562 * 7 2 1 10 10 O 1.21684 * 119.99643 * 359.97438 * 9 7 2 11 11 N 1.34770 * 120.00397 * 179.97438 * 9 7 2 12 12 C 1.47427 * 125.64613 * 359.97438 * 11 9 7 13 13 C 1.54909 * 104.83281 * 204.16163 * 12 11 9 14 14 C 1.55158 * 101.61642 * 322.96922 * 13 12 11 15 15 C 1.47014 * 125.65286 * 180.02562 * 11 9 7 16 16 H 1.09001 * 109.88533 * 59.49138 * 15 11 9 17 17 C 1.50708 * 109.88212 * 298.32759 * 15 11 9 18 18 C 1.38668 * 120.41536 * 141.45221 * 17 15 11 19 19 C 1.38633 * 118.41790 * 180.02562 * 18 17 15 20 20 C 1.38225 * 119.16114 * 359.97438 * 19 18 17 21 21 N 1.31855 * 120.76551 * 0.02562 * 20 19 18 22 22 C 1.31892 * 121.72127 * 359.69783 * 21 20 19 23 23 H 0.96999 * 119.99985 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.36908 * 85.32181 * 12 11 9 25 25 H 1.09000 * 110.46067 * 323.04540 * 12 11 9 26 26 H 1.09002 * 111.00594 * 81.06240 * 13 12 11 27 27 H 1.09002 * 111.00655 * 204.87504 * 13 12 11 28 28 H 1.08996 * 110.72495 * 153.88672 * 14 13 12 29 29 H 1.09005 * 110.72041 * 277.15972 * 14 13 12 30 30 H 1.07997 * 120.79619 * 359.97438 * 18 17 15 31 31 H 1.08000 * 120.41936 * 179.97438 * 19 18 17 32 32 H 1.08003 * 119.61719 * 180.02562 * 20 19 18 33 33 H 1.08002 * 119.61360 * 180.30918 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8818 2.3965 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9489 -3.6477 0.0005 12 6 3.4161 -3.7928 0.0000 13 6 3.6760 -5.1916 -0.6127 14 6 2.4968 -6.0130 -0.0277 15 6 1.3428 -4.9871 0.0000 16 1 0.7162 -5.1101 -0.8834 17 6 0.5183 -5.1770 1.2472 18 6 -0.6882 -5.8584 1.1941 19 6 -1.4132 -6.0086 2.3662 20 6 -0.9126 -5.4784 3.5404 21 7 0.2389 -4.8362 3.5535 22 6 0.9578 -4.6791 2.4589 23 1 -0.4850 0.8400 -0.0004 24 1 3.8022 -3.7469 1.0183 25 1 3.8753 -3.0183 -0.6143 26 1 3.6260 -5.1569 -1.7010 27 1 4.6338 -5.5919 -0.2803 28 1 2.2516 -6.8527 -0.6779 29 1 2.7299 -6.3589 0.9793 30 1 -1.0549 -6.2618 0.2618 31 1 -2.3572 -6.5333 2.3618 32 1 -1.4711 -5.5915 4.4579 33 1 1.8987 -4.1513 2.5095 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408309874.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:59 Heat of formation + Delta-G solvation = 0.641249 kcal Electronic energy + Delta-G solvation = -17880.718465 eV Core-core repulsion = 15099.233309 eV Total energy + Delta-G solvation = -2781.485156 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.96318 -38.17412 -35.67099 -32.55770 -32.31253 -31.11642 -30.40705 -27.63350 -26.13383 -23.30390 -23.03835 -21.72165 -20.69068 -18.89488 -16.90269 -16.52415 -16.07078 -15.51867 -15.00349 -14.60424 -14.18243 -13.56238 -13.42148 -12.81178 -12.78514 -12.61988 -12.56199 -12.09217 -11.78027 -11.35034 -11.14782 -10.93222 -10.81302 -10.73126 -10.48765 -10.27932 -10.12398 -9.29505 -8.99382 -8.87148 -8.45806 -7.61364 -7.28311 -6.21170 -4.66079 1.62899 1.78778 3.12054 3.20235 3.24426 4.05268 4.26403 4.52776 4.57861 4.87003 5.01921 5.13053 5.20285 5.26521 5.42944 5.53733 5.59674 5.77825 5.80199 5.92371 6.00152 6.04476 6.14269 6.24056 6.43765 6.46823 6.57311 6.61421 6.81980 7.18374 7.33732 7.42366 8.08133 8.38010 8.47906 9.00639 9.45825 10.56006 10.74894 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022356 B = 0.008362 C = 0.006843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.147819 B = 3347.824281 C = 4090.843473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.571 3.429 10 O -0.568 6.568 11 N -0.639 5.639 12 C 0.115 3.885 13 C -0.134 4.134 14 C -0.122 4.122 15 C 0.183 3.817 16 H 0.068 0.932 17 C -0.111 4.111 18 C -0.071 4.071 19 C -0.177 4.177 20 C 0.081 3.919 21 N -0.488 5.488 22 C 0.124 3.876 23 H 0.268 0.732 24 H 0.047 0.953 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.147 0.853 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.208 -11.056 1.016 11.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.378 3.622 10 O -0.449 6.449 11 N -0.379 5.379 12 C -0.009 4.009 13 C -0.172 4.172 14 C -0.160 4.160 15 C 0.077 3.923 16 H 0.086 0.914 17 C -0.115 4.115 18 C -0.097 4.097 19 C -0.197 4.197 20 C -0.076 4.076 21 N -0.197 5.197 22 C -0.034 4.034 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.164 0.836 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.607 -10.489 1.803 11.237 hybrid contribution 0.008 0.556 -0.820 0.991 sum 3.614 -9.933 0.983 10.615 Atomic orbital electron populations 1.70026 1.07058 1.27208 1.35210 1.25724 0.94622 1.00319 0.92634 0.86324 0.80524 0.81770 0.78232 1.18692 1.20160 1.20142 1.20919 0.93609 0.88880 1.54074 0.91164 1.18062 0.86755 0.81092 0.76334 1.90628 1.13804 1.85629 1.54831 1.48938 1.04733 1.03742 1.80460 1.21943 0.83937 0.95761 0.99281 1.22812 0.97669 0.96092 1.00672 1.22674 0.94843 0.97108 1.01365 1.20080 0.93278 0.85608 0.93328 0.91416 1.21227 0.96031 0.97045 0.97151 1.21347 0.93535 0.96632 0.98207 1.21969 1.00917 1.02807 0.94022 1.22584 0.92835 0.94591 0.97582 1.67645 1.06794 1.13880 1.31368 1.22467 0.98815 0.94711 0.87360 0.92148 0.93435 0.90928 0.91054 0.90860 0.90872 0.91091 0.85514 0.85507 0.83587 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.12 11.83 55.55 0.66 -22.47 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 20.25 29.56 -169.99 -5.02 15.22 16 4 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.10 8.98 -35.63 -0.32 -15.42 16 8 H 0.07 1.81 6.64 -52.49 -0.35 1.46 16 9 C 0.57 16.10 7.43 -12.99 -0.10 16.01 16 10 O -0.57 -18.30 14.86 5.20 0.08 -18.23 16 11 N -0.64 -14.16 2.35 -165.90 -0.39 -14.55 16 12 C 0.12 2.02 6.52 -2.53 -0.02 2.00 16 13 C -0.13 -1.80 7.08 -24.58 -0.17 -1.97 16 14 C -0.12 -1.69 6.47 -24.84 -0.16 -1.85 16 15 C 0.18 3.44 3.07 -68.05 -0.21 3.23 16 16 H 0.07 1.33 8.05 -51.93 -0.42 0.92 16 17 C -0.11 -2.16 4.10 -104.48 -0.43 -2.59 16 18 C -0.07 -1.22 9.83 -39.28 -0.39 -1.61 16 19 C -0.18 -2.79 10.11 -39.44 -0.40 -3.19 16 20 C 0.08 1.37 11.18 -17.55 -0.20 1.17 16 21 N -0.49 -9.78 10.36 -13.25 -0.14 -9.92 16 22 C 0.12 2.54 10.33 -17.55 -0.18 2.35 16 23 H 0.27 7.34 8.29 -40.82 -0.34 7.01 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.30 7.15 -51.93 -0.37 0.93 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.95 7.81 -51.93 -0.41 0.54 16 30 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.15 1.96 8.06 -52.48 -0.42 1.53 16 33 H 0.15 3.09 7.70 -52.49 -0.40 2.69 16 LS Contribution 283.28 15.07 4.27 4.27 Total: -1.00 -35.15 283.28 -7.25 -42.40 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -4.04 Total: 2.79 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -2.66 Total: 0.48 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.13 Total: -46.93 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.08 Total: -18.23 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -35.15 -7.25 -42.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408309874.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.042 kcal (2) G-P(sol) polarization free energy of solvation -35.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds