Wall clock time and date at job start Sun Mar 29 2020 22:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86804 * 120.00161 * 2 1 4 4 H 1.48498 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46905 * 300.00259 * 3 2 1 6 6 H 1.48502 * 109.46527 * 60.00255 * 3 2 1 7 7 C 1.40050 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99987 * 179.97438 * 7 2 1 9 9 C 1.46378 * 120.00237 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99770 * 359.97438 * 9 7 2 11 11 N 1.34770 * 119.99935 * 179.97438 * 9 7 2 12 12 C 1.47422 * 125.65347 * 359.96670 * 11 9 7 13 13 C 1.54910 * 104.83352 * 155.89142 * 12 11 9 14 14 C 1.55157 * 101.58001 * 37.01641 * 13 12 11 15 15 C 1.47025 * 125.64454 * 179.97438 * 11 9 7 16 16 H 1.08996 * 110.01333 * 300.52539 * 15 11 9 17 17 C 1.50703 * 109.88094 * 61.62280 * 15 11 9 18 18 C 1.38654 * 120.78444 * 217.80463 * 17 15 11 19 19 C 1.38209 * 119.15786 * 179.97438 * 18 17 15 20 20 N 1.31870 * 120.76375 * 0.26353 * 19 18 17 21 21 C 1.31872 * 121.72489 * 359.46946 * 20 19 18 22 22 C 1.38200 * 120.76402 * 0.52682 * 21 20 19 23 23 H 0.96998 * 120.00136 * 359.97438 * 1 2 3 24 24 H 1.09008 * 110.36268 * 37.05645 * 12 11 9 25 25 H 1.09000 * 110.46263 * 274.78669 * 12 11 9 26 26 H 1.08998 * 111.00714 * 278.94089 * 13 12 11 27 27 H 1.08997 * 111.00167 * 155.08452 * 13 12 11 28 28 H 1.09003 * 110.71988 * 206.13512 * 14 13 12 29 29 H 1.09001 * 110.72385 * 82.85498 * 14 13 12 30 30 H 1.07995 * 120.42251 * 0.02562 * 18 17 15 31 31 H 1.08002 * 119.61346 * 179.97438 * 19 18 17 32 32 H 1.08004 * 119.61160 * 180.27376 * 21 20 19 33 33 H 1.08003 * 120.41583 * 179.72635 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7007 1.3463 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3963 1.2126 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4806 0.0005 10 8 0.0582 -2.4806 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 3.4160 -3.7929 -0.0002 13 6 3.6764 -5.1920 0.6118 14 6 2.4961 -6.0121 0.0272 15 6 1.3427 -4.9871 0.0011 16 1 0.7153 -5.1123 0.8835 17 6 0.5172 -5.1765 -1.2455 18 6 -0.6829 -5.8697 -1.2034 19 6 -1.4131 -6.0230 -2.3668 20 7 -0.9779 -5.5237 -3.5071 21 6 0.1559 -4.8547 -3.5833 22 6 0.9396 -4.6615 -2.4614 23 1 -0.4850 0.8400 0.0004 24 1 3.8741 -3.0184 0.6152 25 1 3.8031 -3.7459 -1.0180 26 1 3.6272 -5.1577 1.7001 27 1 4.6336 -5.5924 0.2779 28 1 2.2508 -6.8520 0.6774 29 1 2.7282 -6.3578 -0.9801 30 1 -1.0428 -6.2839 -0.2732 31 1 -2.3487 -6.5620 -2.3425 32 1 0.4778 -4.4566 -4.5343 33 1 1.8694 -4.1165 -2.5312 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408310024.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:13 Heat of formation + Delta-G solvation = 0.108597 kcal Electronic energy + Delta-G solvation = -17869.771820 eV Core-core repulsion = 15088.263566 eV Total energy + Delta-G solvation = -2781.508254 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.94633 -38.24052 -35.71372 -32.62891 -32.37168 -30.73120 -30.40292 -28.00716 -26.16799 -23.37932 -22.93506 -21.73500 -20.72168 -18.96202 -16.91336 -16.42441 -15.77672 -15.39064 -15.06717 -14.92110 -14.25243 -13.55575 -13.37236 -13.19967 -12.87259 -12.71548 -12.61353 -11.94320 -11.42722 -11.30138 -11.20649 -11.01559 -10.90432 -10.82262 -10.47439 -10.30664 -10.15313 -9.11790 -8.96188 -8.88268 -8.63065 -7.65419 -7.32752 -6.24080 -4.69394 1.65487 1.79620 3.09490 3.17775 3.21862 4.02456 4.26230 4.49655 4.54288 4.88982 4.92846 5.02120 5.16948 5.32262 5.42836 5.64032 5.68314 5.74527 5.78041 5.89035 6.00375 6.09968 6.12227 6.20407 6.39605 6.39971 6.52677 6.60561 6.92215 7.19518 7.29927 7.39294 8.04798 8.34738 8.42414 8.97519 9.42497 10.52985 10.71814 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.008326 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.377842 B = 3362.224729 C = 4112.989668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.571 3.429 10 O -0.567 6.567 11 N -0.637 5.637 12 C 0.116 3.884 13 C -0.134 4.134 14 C -0.121 4.121 15 C 0.177 3.823 16 H 0.070 0.930 17 C -0.019 4.019 18 C -0.166 4.166 19 C 0.089 3.911 20 N -0.497 5.497 21 C 0.090 3.910 22 C -0.143 4.143 23 H 0.268 0.732 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.127 0.873 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.946 -10.023 -1.102 11.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.377 3.623 10 O -0.448 6.448 11 N -0.377 5.377 12 C -0.008 4.008 13 C -0.172 4.172 14 C -0.159 4.159 15 C 0.071 3.929 16 H 0.088 0.912 17 C -0.029 4.029 18 C -0.186 4.186 19 C -0.068 4.068 20 N -0.207 5.207 21 C -0.066 4.066 22 C -0.163 4.163 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.165 0.835 32 H 0.165 0.835 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.543 -9.918 -1.849 11.064 hybrid contribution 0.926 1.067 0.800 1.624 sum 5.468 -8.850 -1.049 10.456 Atomic orbital electron populations 1.70027 1.07044 1.27258 1.35103 1.25727 0.94624 1.00310 0.92652 0.86325 0.80491 0.81765 0.78278 1.18719 1.20133 1.20123 1.20913 0.93580 0.88868 1.54169 0.91201 1.18071 0.86767 0.81082 0.76352 1.90637 1.13773 1.85597 1.54793 1.48925 1.04707 1.03657 1.80438 1.21934 0.83932 0.95759 0.99222 1.22814 0.97645 0.96075 1.00709 1.22639 0.94743 0.97092 1.01430 1.20169 0.93429 0.85791 0.93486 0.91207 1.20674 0.94177 0.92417 0.95625 1.21898 0.95603 1.01419 0.99693 1.22534 0.98848 0.97209 0.88164 1.67565 1.14545 1.09990 1.28605 1.22586 0.90440 0.95190 0.98355 1.21885 1.01739 0.99685 0.93018 0.92101 0.90957 0.93498 0.91012 0.90835 0.90792 0.91052 0.85510 0.83478 0.83460 0.85252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.89 11.83 55.55 0.66 -22.23 16 2 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16 3 Si 0.91 19.98 29.56 -169.99 -5.02 14.96 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -14.93 8.98 -35.63 -0.32 -15.25 16 8 H 0.07 1.78 6.64 -52.48 -0.35 1.43 16 9 C 0.57 15.93 7.41 -12.99 -0.10 15.83 16 10 O -0.57 -18.15 14.85 5.20 0.08 -18.08 16 11 N -0.64 -13.98 2.38 -165.96 -0.40 -14.37 16 12 C 0.12 2.01 6.52 -2.53 -0.02 1.99 16 13 C -0.13 -1.78 7.08 -24.58 -0.17 -1.95 16 14 C -0.12 -1.66 6.47 -24.89 -0.16 -1.82 16 15 C 0.18 3.30 3.09 -68.10 -0.21 3.09 16 16 H 0.07 1.38 8.06 -51.93 -0.42 0.96 16 17 C -0.02 -0.37 4.11 -104.32 -0.43 -0.80 16 18 C -0.17 -2.90 9.79 -39.44 -0.39 -3.29 16 19 C 0.09 1.52 11.18 -17.55 -0.20 1.32 16 20 N -0.50 -9.25 10.36 -13.25 -0.14 -9.39 16 21 C 0.09 1.64 11.18 -17.55 -0.20 1.45 16 22 C -0.14 -2.75 9.27 -39.45 -0.37 -3.12 16 23 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 24 H 0.07 1.29 7.14 -51.92 -0.37 0.92 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 30 H 0.13 1.91 8.06 -52.49 -0.42 1.48 16 31 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.15 2.25 8.06 -52.48 -0.42 1.83 16 33 H 0.13 2.48 7.75 -52.48 -0.41 2.07 16 LS Contribution 283.37 15.07 4.27 4.27 Total: -1.00 -34.78 283.37 -7.25 -42.02 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.05 Total: 3.06 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.65 Total: -0.24 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.12 Total: -45.99 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.08 Total: -18.08 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -34.78 -7.25 -42.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408310024.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.132 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds