Wall clock time and date at job start Sun Mar 29 2020 22:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99708 * 2 1 4 4 H 1.48498 * 109.47140 * 269.99667 * 3 2 1 5 5 H 1.48504 * 109.47104 * 149.99908 * 3 2 1 6 6 H 1.48495 * 109.46993 * 29.99850 * 3 2 1 7 7 C 1.40053 * 120.00635 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99355 * 346.54305 * 7 2 1 9 9 C 1.46375 * 120.00149 * 166.53797 * 7 2 1 10 10 O 1.21688 * 119.99917 * 350.56628 * 9 7 2 11 11 N 1.34778 * 119.99746 * 170.56176 * 9 7 2 12 12 C 1.47428 * 125.64915 * 0.03050 * 11 9 7 13 13 C 1.54904 * 104.83080 * 204.09118 * 12 11 9 14 14 C 1.55162 * 101.58115 * 322.98650 * 13 12 11 15 15 C 1.47018 * 125.64654 * 179.71605 * 11 9 7 16 16 H 1.09001 * 109.88007 * 59.56380 * 15 11 9 17 17 C 1.50704 * 109.88391 * 298.39601 * 15 11 9 18 18 C 1.38653 * 120.78860 * 321.17524 * 17 15 11 19 19 C 1.38204 * 119.15993 * 179.79935 * 18 17 15 20 20 N 1.31872 * 120.76335 * 0.48245 * 19 18 17 21 21 C 1.31874 * 121.72633 * 359.74654 * 20 19 18 22 22 C 1.38204 * 120.76297 * 0.02562 * 21 20 19 23 23 H 0.97003 * 119.99725 * 181.56809 * 1 2 3 24 24 H 1.08998 * 110.36113 * 322.92537 * 12 11 9 25 25 H 1.08993 * 110.36800 * 85.13646 * 12 11 9 26 26 H 1.08998 * 111.01147 * 81.05977 * 13 12 11 27 27 H 1.08997 * 111.00510 * 204.87891 * 13 12 11 28 28 H 1.09004 * 110.71767 * 153.86741 * 14 13 12 29 29 H 1.08997 * 110.71950 * 276.96035 * 14 13 12 30 30 H 1.08002 * 120.41790 * 359.97438 * 18 17 15 31 31 H 1.07999 * 119.61761 * 180.24984 * 19 18 17 32 32 H 1.08000 * 119.61742 * 179.97438 * 21 20 19 33 33 H 1.08002 * 120.41271 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4882 2.0465 -1.4000 5 1 3.5382 1.4403 0.7001 6 1 1.4380 2.6527 0.7000 7 6 2.0071 -1.2128 0.0005 8 1 1.4893 -2.1352 0.2186 9 6 3.4407 -1.2302 -0.2946 10 8 3.9893 -0.2253 -0.7067 11 7 4.1530 -2.3594 -0.1097 12 6 3.6177 -3.6423 0.3812 13 6 4.8390 -4.3736 0.9922 14 6 5.9699 -3.9639 0.0121 15 6 5.5912 -2.5174 -0.3705 16 1 6.1580 -1.8141 0.2396 17 6 5.8766 -2.2793 -1.8310 18 6 5.0041 -2.7342 -2.8079 19 6 5.2968 -2.4936 -4.1370 20 7 6.3947 -1.8486 -4.4799 21 6 7.2491 -1.4058 -3.5782 22 6 7.0206 -1.6053 -2.2299 23 1 -0.4850 -0.8398 0.0230 24 1 2.8585 -3.4695 1.1440 25 1 3.2011 -4.2201 -0.4437 26 1 5.0460 -4.0137 2.0000 27 1 4.6900 -5.4534 0.9882 28 1 6.9398 -3.9926 0.5087 29 1 5.9695 -4.6072 -0.8678 30 1 4.1059 -3.2674 -2.5336 31 1 4.6204 -2.8411 -4.9039 32 1 8.1381 -0.8820 -3.8972 33 1 7.7239 -1.2399 -1.4962 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408310025.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:14 Heat of formation + Delta-G solvation = -13.888410 kcal Electronic energy + Delta-G solvation = -17946.381000 eV Core-core repulsion = 15164.265791 eV Total energy + Delta-G solvation = -2782.115210 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.13973 -38.52357 -36.25068 -32.98820 -32.57490 -30.91994 -30.69231 -28.18569 -26.10985 -23.52342 -23.08272 -21.88220 -20.80653 -19.10054 -17.58867 -16.67972 -16.06142 -15.40992 -15.20039 -15.17164 -14.03672 -13.78606 -13.64615 -13.32719 -13.12779 -12.92598 -12.73563 -12.41449 -11.82036 -11.67265 -11.43003 -11.14555 -10.89700 -10.62320 -10.57399 -10.05252 -9.29041 -9.26693 -9.11572 -8.94102 -8.78387 -8.01057 -7.65294 -7.04648 -4.94590 1.50359 1.63097 3.54771 3.60380 3.94157 4.09202 4.23323 4.26984 4.52266 4.74722 4.77195 4.86062 5.02168 5.17576 5.27163 5.45837 5.48961 5.51876 5.62578 5.73435 5.86302 5.95573 5.98503 6.04930 6.22295 6.24645 6.37449 6.42008 6.74605 6.95563 7.06447 7.65536 7.73228 8.11984 8.28411 8.79932 8.99289 10.02465 10.28367 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020330 B = 0.009517 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.964744 B = 2941.494057 C = 3689.033372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.065 3.935 3 Si 1.118 2.882 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.318 1.318 7 C -0.595 4.595 8 H 0.072 0.928 9 C 0.568 3.432 10 O -0.608 6.608 11 N -0.630 5.630 12 C 0.116 3.884 13 C -0.133 4.133 14 C -0.121 4.121 15 C 0.175 3.825 16 H 0.075 0.925 17 C -0.023 4.023 18 C -0.147 4.147 19 C 0.092 3.908 20 N -0.495 5.495 21 C 0.091 3.909 22 C -0.164 4.164 23 H 0.278 0.722 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.129 0.871 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.804 -9.224 -0.290 14.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.153 4.153 3 Si 0.949 3.051 4 H -0.214 1.214 5 H -0.204 1.204 6 H -0.249 1.249 7 C -0.631 4.631 8 H 0.090 0.910 9 C 0.379 3.621 10 O -0.499 6.499 11 N -0.366 5.366 12 C -0.008 4.008 13 C -0.172 4.172 14 C -0.159 4.159 15 C 0.070 3.930 16 H 0.093 0.907 17 C -0.033 4.033 18 C -0.167 4.167 19 C -0.064 4.064 20 N -0.205 5.205 21 C -0.066 4.066 22 C -0.185 4.185 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.147 0.853 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.935 -6.943 -1.408 13.029 hybrid contribution -0.235 -2.043 0.900 2.245 sum 10.699 -8.986 -0.508 13.981 Atomic orbital electron populations 1.70642 1.07691 1.31875 1.35463 1.27050 0.95241 1.04760 0.88297 0.82643 0.73335 0.71248 0.77845 1.21425 1.20386 1.24939 1.21991 0.91554 0.96968 1.52581 0.90968 1.18188 0.87290 0.79442 0.77212 1.90256 1.72571 1.32657 1.54414 1.48432 1.06141 1.11625 1.70401 1.21969 0.95824 0.85123 0.97864 1.22804 0.95262 1.00081 0.99009 1.22646 0.99010 0.94668 0.99582 1.20242 0.86010 0.96452 0.90269 0.90738 1.20639 0.92969 0.93115 0.96547 1.21901 1.00011 1.01176 0.93578 1.22617 0.93873 0.95061 0.94852 1.67588 1.03744 1.10278 1.38867 1.22576 0.97894 0.96862 0.89260 1.21911 0.98548 1.00531 0.97489 0.91097 0.90678 0.93239 0.90804 0.90540 0.90496 0.90927 0.85310 0.83303 0.83302 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.84 13.65 55.55 0.76 -23.08 16 2 C 0.06 1.86 5.52 -17.37 -0.10 1.77 16 3 Si 1.12 29.68 26.37 -169.99 -4.48 25.20 16 4 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 5 H -0.28 -7.53 6.52 56.52 0.37 -7.16 16 6 H -0.32 -8.06 7.11 56.52 0.40 -7.66 16 7 C -0.59 -16.57 9.28 -35.63 -0.33 -16.90 16 8 H 0.07 1.97 7.03 -52.48 -0.37 1.60 16 9 C 0.57 15.00 7.16 -12.99 -0.09 14.91 16 10 O -0.61 -17.57 12.16 5.20 0.06 -17.51 16 11 N -0.63 -13.23 2.41 -165.97 -0.40 -13.63 16 12 C 0.12 1.96 6.47 -2.53 -0.02 1.94 16 13 C -0.13 -1.68 7.09 -24.58 -0.17 -1.85 16 14 C -0.12 -1.55 6.47 -24.89 -0.16 -1.71 16 15 C 0.18 3.07 3.08 -68.10 -0.21 2.86 16 16 H 0.07 1.35 8.06 -51.93 -0.42 0.94 16 17 C -0.02 -0.42 4.11 -104.32 -0.43 -0.85 16 18 C -0.15 -2.64 9.29 -39.44 -0.37 -3.01 16 19 C 0.09 1.57 11.18 -17.55 -0.20 1.38 16 20 N -0.50 -8.65 10.36 -13.25 -0.14 -8.79 16 21 C 0.09 1.44 11.18 -17.55 -0.20 1.24 16 22 C -0.16 -2.66 9.79 -39.44 -0.39 -3.05 16 23 H 0.28 7.66 8.72 -40.82 -0.36 7.31 16 24 H 0.07 1.34 7.29 -51.93 -0.38 0.96 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.89 7.82 -51.93 -0.41 0.49 16 30 H 0.13 2.33 7.78 -52.49 -0.41 1.92 16 31 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 279.75 15.07 4.22 4.22 Total: -1.00 -33.03 279.75 -6.76 -39.79 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -4.12 Total: -2.93 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -2.65 Total: -3.28 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.22 Total: -45.50 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.06 Total: -17.51 kcal Atomic # 14 Polarization: 29.68 SS G_CDS: -4.48 Total: 25.20 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.03 -6.76 -39.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408310025.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.903 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds