Wall clock time and date at job start Sun Mar 29 2020 22:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00052 * 2 1 4 4 H 1.48501 * 109.47043 * 239.99813 * 3 2 1 5 5 H 1.48496 * 109.47082 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47624 * 119.99796 * 3 2 1 7 7 C 1.37880 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99675 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00093 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.46916 * 179.97438 * 9 7 2 11 11 C 1.81396 * 102.99769 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47608 * 180.02562 * 11 10 9 13 13 O 1.42897 * 109.47815 * 180.02562 * 12 11 10 14 14 C 1.42894 * 113.99837 * 180.02562 * 13 12 11 15 15 H 1.08999 * 109.48579 * 54.97471 * 14 13 12 16 16 C 1.53098 * 109.47632 * 174.99873 * 14 13 12 17 17 C 1.53177 * 109.21356 * 177.56731 * 16 14 13 18 18 C 1.53180 * 109.03525 * 303.11207 * 17 16 14 19 19 C 1.53097 * 109.21119 * 56.88485 * 18 17 16 20 20 O 1.42898 * 109.41405 * 302.42599 * 19 18 17 21 21 H 0.97004 * 120.00264 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.46620 * 59.99630 * 9 7 2 23 23 H 1.09002 * 109.46965 * 299.99933 * 9 7 2 24 24 H 1.08994 * 109.47793 * 59.99845 * 11 10 9 25 25 H 1.09002 * 109.47337 * 300.00047 * 11 10 9 26 26 H 1.09003 * 109.46997 * 59.98840 * 12 11 10 27 27 H 1.09002 * 109.46621 * 300.00254 * 12 11 10 28 28 H 1.09002 * 109.52244 * 297.50671 * 16 14 13 29 29 H 1.09004 * 109.52508 * 57.63199 * 16 14 13 30 30 H 1.09005 * 109.54330 * 62.92184 * 17 16 14 31 31 H 1.09005 * 109.54560 * 183.18386 * 17 16 14 32 32 H 1.08992 * 109.47198 * 296.98281 * 18 17 16 33 33 H 1.09005 * 109.58122 * 176.85328 * 18 17 16 34 34 H 1.09007 * 109.47760 * 182.43925 * 19 18 17 35 35 H 1.09003 * 109.48798 * 62.41590 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3516 -5.3366 -0.0003 12 6 2.2084 -6.6043 0.0003 13 8 1.3590 -7.7534 -0.0009 14 6 2.0634 -8.9967 0.0001 15 1 2.7545 -9.0224 0.8425 16 6 1.0637 -10.1496 0.1245 17 6 1.8193 -11.4807 0.0638 18 6 2.6197 -11.5418 -1.2408 19 6 3.5592 -10.3351 -1.3125 20 8 2.7943 -9.1316 -1.2204 21 1 -0.4851 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 0.7227 -5.3232 -0.8903 25 1 0.7221 -5.3237 0.8895 26 1 2.8371 -6.6175 0.8907 27 1 2.8382 -6.6175 -0.8892 28 1 0.5361 -10.0733 1.0752 29 1 0.3467 -10.1001 -0.6951 30 1 2.5001 -11.5525 0.9120 31 1 1.1076 -12.3058 0.0950 32 1 1.9349 -11.5211 -2.0885 33 1 3.2048 -12.4611 -1.2677 34 1 4.0996 -10.3510 -2.2590 35 1 4.2700 -10.3782 -0.4873 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017661.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:50 Heat of formation + Delta-G solvation = -119.149221 kcal Electronic energy + Delta-G solvation = -15384.052683 eV Core-core repulsion = 12700.524222 eV Total energy + Delta-G solvation = -2683.528461 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.81342 -37.12593 -33.96119 -33.12901 -31.66181 -29.80944 -28.51094 -25.06374 -23.56142 -23.34910 -22.21657 -20.56152 -17.58954 -16.91909 -16.45009 -16.03122 -15.24807 -15.02545 -14.87555 -14.62695 -14.33069 -13.78599 -13.16356 -13.04312 -12.69826 -12.45447 -12.20712 -12.00102 -11.67142 -11.48711 -11.37069 -11.12375 -10.84409 -10.76497 -10.68375 -9.99948 -9.78165 -9.67356 -9.55829 -8.86626 -8.59220 -6.68835 -6.17339 -4.21758 2.42518 3.30043 3.32851 3.34791 3.38647 3.86225 3.93104 4.37445 4.46167 4.49483 4.61291 4.76670 4.80348 5.08598 5.19632 5.20819 5.26488 5.34846 5.41724 5.45309 5.58776 5.63767 5.71319 5.76408 5.94840 6.08174 6.18756 6.93277 7.11921 7.14065 7.18136 7.76793 8.02663 8.79678 9.41008 10.94042 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.075548 B = 0.003332 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.537003 B = 8401.694520 C = 8628.993037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.065 3.935 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.095 3.905 10 S -0.299 6.299 11 C -0.091 4.091 12 C 0.084 3.916 13 O -0.366 6.366 14 C 0.257 3.743 15 H 0.052 0.948 16 C -0.141 4.141 17 C -0.120 4.120 18 C -0.160 4.160 19 C 0.071 3.929 20 O -0.404 6.404 21 H 0.266 0.734 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.068 -22.443 -0.002 22.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.085 0.915 9 C -0.052 4.052 10 S -0.074 6.074 11 C -0.240 4.240 12 C 0.008 3.992 13 O -0.286 6.286 14 C 0.161 3.839 15 H 0.070 0.930 16 C -0.179 4.179 17 C -0.157 4.157 18 C -0.198 4.198 19 C -0.005 4.005 20 O -0.325 6.325 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.782 -22.138 -0.136 22.649 hybrid contribution -0.767 0.645 0.191 1.020 sum 4.015 -21.493 0.054 21.865 Atomic orbital electron populations 1.69949 1.06154 1.27469 1.49558 1.24968 0.94982 0.99277 0.94648 0.86389 0.79374 0.81788 0.78961 1.19884 1.21059 1.19898 1.20644 0.93473 0.88699 1.52448 0.91455 1.21055 0.93520 0.90376 1.00247 1.86497 1.21019 1.01723 1.98134 1.23090 1.00933 0.94726 1.05204 1.22176 0.92303 0.83187 1.01580 1.88008 1.33455 1.13041 1.94092 1.22901 0.89916 0.85009 0.86083 0.93022 1.22024 0.98736 0.92967 1.04178 1.21588 0.99374 0.97029 0.97741 1.22254 0.99723 0.98995 0.98828 1.22499 0.92505 0.83144 1.02401 1.87852 1.63474 1.40803 1.40382 0.92419 0.94460 0.94485 0.90087 0.90250 0.92627 0.91476 0.90015 0.90045 0.91592 0.90739 0.90728 0.90587 0.88524 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -14.75 9.13 -34.44 -0.31 -15.07 16 8 H 0.07 1.92 7.71 -52.49 -0.40 1.52 16 9 C 0.09 2.54 5.70 36.01 0.21 2.74 16 10 S -0.30 -6.77 21.66 -107.50 -2.33 -9.09 16 11 C -0.09 -1.70 6.31 37.16 0.23 -1.47 16 12 C 0.08 1.37 5.81 37.16 0.22 1.59 16 13 O -0.37 -5.71 10.27 -59.04 -0.61 -6.32 16 14 C 0.26 3.20 3.20 37.21 0.12 3.32 16 15 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 16 C -0.14 -1.38 5.78 -26.59 -0.15 -1.53 16 17 C -0.12 -0.86 6.03 -26.55 -0.16 -1.02 16 18 C -0.16 -1.14 6.13 -26.59 -0.16 -1.30 16 19 C 0.07 0.62 6.84 37.21 0.25 0.88 16 20 O -0.40 -5.27 10.03 -59.04 -0.59 -5.86 16 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 22 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 23 H 0.04 1.02 8.14 -51.92 -0.42 0.60 16 24 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 25 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.13 7.75 -51.93 -0.40 0.72 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 304.25 15.07 4.59 4.59 Total: -1.00 -30.76 304.25 -8.95 -39.71 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -5.86 Total: -3.86 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 0.14 Total: -10.10 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.74 Total: -25.64 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -1.20 Total: -12.18 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -6.77 SS G_CDS: -2.33 Total: -9.09 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.76 -8.95 -39.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017661.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.442 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds