Wall clock time and date at job start Sun Mar 29 2020 22:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47085 * 209.46396 * 3 2 1 5 5 C 1.37101 * 119.99874 * 264.51689 * 4 3 2 6 6 H 1.08001 * 119.99870 * 145.04625 * 5 4 3 7 7 C 1.38946 * 120.00158 * 325.05498 * 5 4 3 8 8 N 1.31419 * 119.99651 * 338.60752 * 7 5 4 9 9 Si 1.86802 * 120.00310 * 158.61224 * 7 5 4 10 10 H 1.48496 * 109.47142 * 59.99382 * 9 7 5 11 11 H 1.48507 * 109.46927 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46941 * 299.99517 * 9 7 5 13 13 C 1.34777 * 120.00227 * 84.51520 * 4 3 2 14 14 O 1.21288 * 120.00036 * 0.02562 * 13 4 3 15 15 C 1.50703 * 120.00071 * 180.02562 * 13 4 3 16 16 C 1.47202 * 112.84774 * 309.66529 * 15 13 4 17 17 N 6.09967 * 141.81389 * 206.60209 * 2 1 3 18 18 C 1.53781 * 113.69063 * 80.93421 * 15 13 4 19 19 C 1.53778 * 87.07853 * 139.99477 * 18 15 13 20 20 C 1.53005 * 113.61313 * 220.01664 * 19 18 15 21 21 C 1.53779 * 113.61511 * 178.47192 * 15 13 4 22 22 H 4.40642 * 5.51410 * 179.97438 * 4 1 2 23 23 H 1.09001 * 109.47208 * 89.46174 * 3 2 1 24 24 H 1.09003 * 109.47659 * 329.46077 * 3 2 1 25 25 H 0.96998 * 119.99436 * 180.02562 * 8 7 5 26 26 H 1.09004 * 113.60950 * 254.54043 * 18 15 13 27 27 H 1.08996 * 113.61904 * 25.44350 * 18 15 13 28 28 H 1.09004 * 113.61819 * 89.11494 * 19 18 15 29 29 H 1.09001 * 109.47112 * 157.49762 * 20 19 18 30 30 H 1.08997 * 109.47023 * 277.49894 * 20 19 18 31 31 H 1.09000 * 109.47095 * 37.49885 * 20 19 18 32 32 H 1.08999 * 113.61401 * 334.47766 * 21 15 13 33 33 H 1.09001 * 113.61338 * 105.38297 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.2035 0.6794 5 6 3.4687 2.3147 -0.0504 6 1 3.2842 3.3002 0.3512 7 6 4.0453 2.1731 -1.3066 8 7 4.6502 1.0519 -1.6293 9 14 3.9608 3.5764 -2.5367 10 1 4.6294 4.7741 -1.9680 11 1 4.6464 3.1763 -3.7918 12 1 2.5398 3.8943 -2.8281 13 6 3.2532 1.2176 2.0218 14 8 2.9573 0.2344 2.6674 15 6 3.7544 2.4551 2.7207 16 6 5.0025 2.9746 2.1382 17 7 5.9684 3.3717 1.6886 18 6 2.6743 3.5310 2.9227 19 6 3.2857 3.7717 4.3130 20 6 2.2437 4.0079 5.4082 21 6 3.7977 2.3229 4.2521 22 1 -1.0502 -0.0003 -0.0004 23 1 3.0093 -0.0088 -1.0276 24 1 3.0098 -0.8843 0.5222 25 1 5.0530 0.9533 -2.5061 26 1 2.7741 4.3818 2.2486 27 1 1.6607 3.1316 2.9546 28 1 4.0817 4.5163 4.3171 29 1 2.6790 3.7757 6.3801 30 1 1.9288 5.0513 5.3911 31 1 1.3809 3.3651 5.2336 32 1 3.0911 1.5931 4.6475 33 1 4.8043 2.1983 4.6514 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490984850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:44 Heat of formation + Delta-G solvation = 72.452260 kcal Electronic energy + Delta-G solvation = -17917.754978 eV Core-core repulsion = 15139.383781 eV Total energy + Delta-G solvation = -2778.371197 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.18685 -37.58273 -35.35367 -34.85153 -32.52424 -31.46085 -30.04054 -26.94974 -25.45277 -25.18169 -23.63513 -20.36744 -19.55004 -18.18948 -17.37213 -16.30101 -15.44575 -14.89497 -14.63302 -14.60960 -14.09319 -13.52839 -13.39651 -12.76316 -12.61150 -12.24126 -12.08264 -11.98665 -11.93727 -11.77572 -11.52266 -11.11393 -10.90382 -10.67972 -10.60465 -10.52469 -10.35380 -9.95018 -9.78269 -9.51163 -9.06072 -8.57567 -7.82042 -6.56400 -4.22647 3.04776 3.15394 3.16664 3.30901 3.39890 3.53550 3.67287 3.80159 4.04741 4.52532 4.66252 4.74258 4.84388 4.93959 5.20104 5.32151 5.38093 5.59824 5.87267 5.89366 5.97734 6.06900 6.12934 6.23704 6.27722 6.45313 6.57149 6.67531 6.72244 6.97497 7.29058 7.65536 8.15855 8.39051 8.40430 8.89619 9.23734 9.66913 10.47071 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018693 B = 0.010245 C = 0.008039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.566742 B = 2732.435710 C = 3482.311843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.152 4.152 3 C 0.207 3.793 4 N -0.424 5.424 5 C -0.345 4.345 6 H 0.093 0.907 7 C 0.052 3.948 8 N -0.851 5.851 9 Si 0.911 3.089 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.269 1.269 13 C 0.490 3.510 14 O -0.586 6.586 15 C 0.006 3.994 16 C 0.255 3.745 17 N -0.434 5.434 18 C -0.101 4.101 19 C -0.120 4.120 20 C -0.138 4.138 21 C -0.099 4.099 22 H 0.208 0.792 23 H 0.132 0.868 24 H 0.082 0.918 25 H 0.275 0.725 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 3.841 6.609 9.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.154 4.154 3 C 0.085 3.915 4 N -0.140 5.140 5 C -0.472 4.472 6 H 0.110 0.890 7 C -0.155 4.155 8 N -0.487 5.487 9 Si 0.737 3.263 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.194 1.194 13 C 0.276 3.724 14 O -0.470 6.470 15 C -0.001 4.001 16 C -0.062 4.062 17 N -0.109 5.109 18 C -0.141 4.141 19 C -0.138 4.138 20 C -0.195 4.195 21 C -0.138 4.138 22 H 0.225 0.775 23 H 0.149 0.851 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.750 3.853 6.031 8.080 hybrid contribution -0.543 0.511 -0.857 1.136 sum -4.293 4.364 5.175 8.016 Atomic orbital electron populations 1.24589 0.95603 1.02608 1.04510 1.24276 0.95375 0.98300 0.97424 1.18571 0.81679 0.88912 1.02375 1.43347 1.54089 1.12921 1.03658 1.19369 1.41277 0.86153 1.00421 0.88965 1.25316 0.93420 0.97739 0.99066 1.69864 1.29978 1.26717 1.22110 0.86225 0.78908 0.81447 0.79756 1.19407 1.20552 1.19420 1.19566 0.82063 0.87494 0.83250 1.90562 1.55850 1.34836 1.65756 1.18934 0.88945 0.96217 0.95989 1.27459 0.93099 0.93314 0.92370 1.81084 1.12128 1.09229 1.08499 1.22996 0.97577 0.97016 0.96461 1.22594 0.98685 0.97347 0.95207 1.21685 0.98499 1.01396 0.97949 1.22981 1.02802 0.97023 0.90966 0.77549 0.85055 0.89979 0.91505 0.90318 0.88380 0.89217 0.92534 0.92784 0.92240 0.87299 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.83 19.25 29.55 0.57 -4.26 16 2 C -0.15 -3.35 13.62 -37.13 -0.51 -3.86 16 3 C 0.21 4.89 5.37 -6.83 -0.04 4.86 16 4 N -0.42 -10.33 2.52 -117.93 -0.30 -10.62 16 5 C -0.35 -8.52 7.21 -14.93 -0.11 -8.62 16 6 H 0.09 2.21 5.94 -52.49 -0.31 1.90 16 7 C 0.05 1.31 4.93 -17.47 -0.09 1.22 16 8 N -0.85 -22.05 11.36 55.50 0.63 -21.42 16 9 Si 0.91 19.82 29.60 -169.99 -5.03 14.79 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 12 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 13 C 0.49 11.33 6.73 -10.98 -0.07 11.26 16 14 O -0.59 -14.45 15.58 5.55 0.09 -14.36 16 15 C 0.01 0.11 0.66 -157.63 -0.10 0.01 16 16 C 0.26 5.45 11.58 -20.73 -0.24 5.21 16 17 N -0.43 -10.01 18.54 42.19 0.78 -9.23 16 18 C -0.10 -1.60 6.11 -25.92 -0.16 -1.75 16 19 C -0.12 -1.58 4.07 -89.81 -0.37 -1.95 16 20 C -0.14 -1.47 9.71 37.16 0.36 -1.11 16 21 C -0.10 -1.54 6.52 -25.92 -0.17 -1.71 16 22 H 0.21 2.96 7.80 -54.08 -0.42 2.54 16 23 H 0.13 3.24 5.39 -51.93 -0.28 2.96 16 24 H 0.08 1.95 7.59 -51.93 -0.39 1.55 16 25 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 26 H 0.08 1.22 7.72 -51.93 -0.40 0.82 16 27 H 0.10 1.51 7.92 -51.93 -0.41 1.09 16 28 H 0.09 1.14 8.13 -51.93 -0.42 0.72 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.64 7.94 -51.93 -0.41 0.22 16 32 H 0.11 1.72 7.41 -51.93 -0.38 1.33 16 33 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 LS Contribution 293.22 15.07 4.42 4.42 Total: -1.00 -29.07 293.22 -4.17 -33.24 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -3.84 Total: 3.89 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -0.92 Total: -0.71 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 1.12 Total: -41.26 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.09 Total: -14.36 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.07 -4.17 -33.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.687 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds