Wall clock time and date at job start Sun Mar 29 2020 22:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47085 * 209.46396 * 3 2 1 5 5 C 1.37101 * 119.99874 * 264.51689 * 4 3 2 6 6 H 1.08001 * 119.99870 * 145.04625 * 5 4 3 7 7 C 1.38946 * 120.00158 * 325.05498 * 5 4 3 8 8 N 1.31419 * 119.99651 * 338.60752 * 7 5 4 9 9 Si 1.86802 * 120.00310 * 158.61224 * 7 5 4 10 10 H 1.48496 * 109.47142 * 59.99382 * 9 7 5 11 11 H 1.48507 * 109.46927 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46941 * 299.99517 * 9 7 5 13 13 C 1.34777 * 120.00227 * 84.51520 * 4 3 2 14 14 O 1.21288 * 120.00036 * 0.02562 * 13 4 3 15 15 C 1.50703 * 120.00071 * 180.02562 * 13 4 3 16 16 C 1.47202 * 112.84774 * 309.66529 * 15 13 4 17 17 N 6.09967 * 141.81389 * 206.60209 * 2 1 3 18 18 C 1.53781 * 113.69063 * 80.93421 * 15 13 4 19 19 C 1.53778 * 87.07853 * 139.99477 * 18 15 13 20 20 C 1.53005 * 113.61313 * 220.01664 * 19 18 15 21 21 C 1.53779 * 113.61511 * 178.47192 * 15 13 4 22 22 H 4.40642 * 5.51410 * 179.97438 * 4 1 2 23 23 H 1.09001 * 109.47208 * 89.46174 * 3 2 1 24 24 H 1.09003 * 109.47659 * 329.46077 * 3 2 1 25 25 H 0.96998 * 119.99436 * 180.02562 * 8 7 5 26 26 H 1.09004 * 113.60950 * 254.54043 * 18 15 13 27 27 H 1.08996 * 113.61904 * 25.44350 * 18 15 13 28 28 H 1.09004 * 113.61819 * 89.11494 * 19 18 15 29 29 H 1.09001 * 109.47112 * 157.49762 * 20 19 18 30 30 H 1.08997 * 109.47023 * 277.49894 * 20 19 18 31 31 H 1.09000 * 109.47095 * 37.49885 * 20 19 18 32 32 H 1.08999 * 113.61401 * 334.47766 * 21 15 13 33 33 H 1.09001 * 113.61338 * 105.38297 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.2035 0.6794 5 6 3.4687 2.3147 -0.0504 6 1 3.2842 3.3002 0.3512 7 6 4.0453 2.1731 -1.3066 8 7 4.6502 1.0519 -1.6293 9 14 3.9608 3.5764 -2.5367 10 1 4.6294 4.7741 -1.9680 11 1 4.6464 3.1763 -3.7918 12 1 2.5398 3.8943 -2.8281 13 6 3.2532 1.2176 2.0218 14 8 2.9573 0.2344 2.6674 15 6 3.7544 2.4551 2.7207 16 6 5.0025 2.9746 2.1382 17 7 5.9684 3.3717 1.6886 18 6 2.6743 3.5310 2.9227 19 6 3.2857 3.7717 4.3130 20 6 2.2437 4.0079 5.4082 21 6 3.7977 2.3229 4.2521 22 1 -1.0502 -0.0003 -0.0004 23 1 3.0093 -0.0088 -1.0276 24 1 3.0098 -0.8843 0.5222 25 1 5.0530 0.9533 -2.5061 26 1 2.7741 4.3818 2.2486 27 1 1.6607 3.1316 2.9546 28 1 4.0817 4.5163 4.3171 29 1 2.6790 3.7757 6.3801 30 1 1.9288 5.0513 5.3911 31 1 1.3809 3.3651 5.2336 32 1 3.0911 1.5931 4.6475 33 1 4.8043 2.1983 4.6514 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490984850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:44 Heat of formation + Delta-G solvation = 56.318661 kcal Electronic energy + Delta-G solvation = -17918.454584 eV Core-core repulsion = 15139.383781 eV Total energy + Delta-G solvation = -2779.070803 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.72343 -39.19490 -37.17174 -36.57596 -34.25367 -33.26638 -31.24030 -28.61567 -26.94896 -26.71909 -25.10930 -21.93291 -21.05805 -19.87675 -18.96421 -17.98545 -17.05169 -16.65986 -16.30971 -15.91237 -15.78032 -15.13353 -14.93206 -14.24228 -14.03814 -13.89575 -13.74400 -13.63616 -13.43933 -13.15614 -12.98041 -12.85556 -12.75242 -12.27150 -11.97423 -11.72225 -11.66575 -11.46761 -11.26551 -11.14934 -10.80074 -10.33876 -9.71924 -8.45451 -6.16038 1.30605 1.37967 1.45556 1.59941 1.75199 1.85643 2.04852 2.05954 2.26158 2.91470 2.99546 3.07498 3.57826 3.60015 3.75628 3.87261 4.09730 4.39068 4.62758 4.73483 4.79042 4.85013 4.88023 4.97066 5.09225 5.18046 5.20324 5.22236 5.37810 5.43987 5.60993 5.81453 6.25756 6.69246 6.80739 6.99830 7.39540 7.82067 8.58754 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018693 B = 0.010245 C = 0.008039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.566742 B = 2732.435710 C = 3482.311843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.221 4.221 3 C 0.211 3.789 4 N -0.436 5.436 5 C -0.348 4.348 6 H 0.098 0.902 7 C 0.011 3.989 8 N -0.882 5.882 9 Si 0.965 3.035 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.258 1.258 13 C 0.482 3.518 14 O -0.608 6.608 15 C -0.011 4.011 16 C 0.268 3.732 17 N -0.469 5.469 18 C -0.097 4.097 19 C -0.098 4.098 20 C -0.134 4.134 21 C -0.094 4.094 22 H 0.257 0.743 23 H 0.115 0.885 24 H 0.064 0.936 25 H 0.275 0.725 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 5.351 7.548 11.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.222 4.222 3 C 0.088 3.912 4 N -0.153 5.153 5 C -0.475 4.475 6 H 0.115 0.885 7 C -0.193 4.193 8 N -0.519 5.519 9 Si 0.788 3.212 10 H -0.197 1.197 11 H -0.204 1.204 12 H -0.182 1.182 13 C 0.269 3.731 14 O -0.494 6.494 15 C -0.018 4.018 16 C -0.049 4.049 17 N -0.145 5.145 18 C -0.136 4.136 19 C -0.117 4.117 20 C -0.191 4.191 21 C -0.133 4.133 22 H 0.273 0.727 23 H 0.132 0.868 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.593 5.368 6.976 10.429 hybrid contribution -0.035 -0.052 -1.120 1.122 sum -5.628 5.316 5.855 9.707 Atomic orbital electron populations 1.25619 0.96369 0.99051 1.00831 1.24195 0.95682 1.01605 1.00761 1.18267 0.83533 0.88282 1.01083 1.43583 1.54444 1.12998 1.04273 1.19549 1.40957 0.86435 1.00601 0.88478 1.26050 0.93188 0.99648 1.00451 1.69960 1.31112 1.28356 1.22456 0.85411 0.79300 0.78685 0.77773 1.19740 1.20429 1.18198 1.20210 0.81387 0.88509 0.82949 1.90528 1.56745 1.36016 1.66098 1.19274 0.89141 0.95765 0.97602 1.27871 0.93091 0.92418 0.91526 1.81080 1.13282 1.10631 1.09556 1.23078 0.96687 0.95576 0.98250 1.22508 0.99130 0.95627 0.94409 1.21674 0.97555 1.02502 0.97400 1.23048 1.03491 0.98998 0.87773 0.72726 0.86755 0.91766 0.91535 0.90069 0.87912 0.88345 0.91080 0.91114 0.92320 0.87386 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.08 19.25 74.32 1.43 -5.65 16 2 C -0.22 -9.67 13.62 31.12 0.42 -9.25 16 3 C 0.21 10.34 5.37 84.57 0.45 10.80 16 4 N -0.44 -21.68 2.52 -645.42 -1.62 -23.31 16 5 C -0.35 -17.33 7.21 84.04 0.61 -16.72 16 6 H 0.10 4.63 5.94 -2.91 -0.02 4.62 16 7 C 0.01 0.56 4.93 84.92 0.42 0.98 16 8 N -0.88 -46.98 11.36 21.66 0.25 -46.73 16 9 Si 0.96 40.58 29.60 68.60 2.03 42.62 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 13 C 0.48 22.52 6.73 87.66 0.59 23.11 16 14 O -0.61 -30.45 15.58 -3.05 -0.05 -30.50 16 15 C -0.01 -0.42 0.66 -54.21 -0.04 -0.46 16 16 C 0.27 11.40 11.58 89.43 1.04 12.44 16 17 N -0.47 -21.73 18.54 20.02 0.37 -21.36 16 18 C -0.10 -2.87 6.11 31.12 0.19 -2.68 16 19 C -0.10 -2.32 4.07 -10.27 -0.04 -2.36 16 20 C -0.13 -2.36 9.71 71.98 0.70 -1.66 16 21 C -0.09 -2.79 6.52 31.12 0.20 -2.59 16 22 H 0.26 5.99 7.80 -4.41 -0.03 5.95 16 23 H 0.12 5.92 5.39 -2.39 -0.01 5.91 16 24 H 0.06 3.24 7.59 -2.39 -0.02 3.22 16 25 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 26 H 0.08 2.36 7.72 -2.38 -0.02 2.34 16 27 H 0.10 2.95 7.92 -2.39 -0.02 2.93 16 28 H 0.10 2.20 8.13 -2.38 -0.02 2.19 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.06 7.94 -2.39 -0.02 1.04 16 32 H 0.11 3.25 7.41 -2.39 -0.02 3.23 16 33 H 0.08 2.22 8.08 -2.39 -0.02 2.20 16 Total: -1.00 -63.81 293.22 8.07 -55.74 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 1.12 Total: 17.59 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 5.97 Total: 5.94 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -1.01 Total: -91.40 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.05 Total: -30.50 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.62 kcal Total: -63.81 8.07 -55.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.063 kcal (2) G-P(sol) polarization free energy of solvation -63.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds