Wall clock time and date at job start Sun Mar 29 2020 22:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47240 * 56.28660 * 3 2 1 5 5 C 1.37099 * 119.99831 * 271.28352 * 4 3 2 6 6 H 1.07995 * 120.00061 * 185.55101 * 5 4 3 7 7 C 1.38962 * 119.99849 * 5.54344 * 5 4 3 8 8 N 1.31409 * 119.99742 * 21.80350 * 7 5 4 9 9 Si 1.86796 * 119.99636 * 201.79669 * 7 5 4 10 10 H 1.48509 * 109.46933 * 90.00968 * 9 7 5 11 11 H 1.48507 * 109.47179 * 210.00280 * 9 7 5 12 12 H 1.48500 * 109.47596 * 330.00667 * 9 7 5 13 13 C 1.34773 * 119.99993 * 91.28162 * 4 3 2 14 14 O 1.21294 * 119.99754 * 185.31969 * 13 4 3 15 15 C 1.50697 * 120.00100 * 5.31529 * 13 4 3 16 16 C 1.47202 * 110.01658 * 60.30263 * 15 13 4 17 17 N 4.58221 * 145.59317 * 162.97279 * 2 1 3 18 18 C 1.54260 * 110.03318 * 298.90851 * 15 13 4 19 19 C 1.54969 * 104.16087 * 217.13506 * 18 15 13 20 20 C 1.54895 * 102.77316 * 37.88948 * 19 18 15 21 21 C 1.53881 * 110.03060 * 181.69030 * 15 13 4 22 22 H 4.40645 * 5.51385 * 180.02562 * 4 1 2 23 23 H 1.09003 * 109.47130 * 176.28331 * 3 2 1 24 24 H 1.09004 * 109.47116 * 296.28406 * 3 2 1 25 25 H 0.96999 * 119.99515 * 179.97438 * 8 7 5 26 26 H 1.09000 * 110.48786 * 335.78780 * 18 15 13 27 27 H 1.09005 * 110.48551 * 98.42687 * 18 15 13 28 28 H 1.08997 * 110.71776 * 279.57903 * 19 18 15 29 29 H 1.08997 * 110.76585 * 156.22503 * 19 18 15 30 30 H 1.09000 * 110.48194 * 203.40461 * 20 19 18 31 31 H 1.09001 * 110.48304 * 80.76338 * 20 19 18 32 32 H 1.08998 * 110.03323 * 238.57197 * 21 15 13 33 33 H 1.08997 * 110.03083 * 0.02562 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7658 -1.1489 5 6 3.3387 -2.1167 -1.0350 6 1 3.7829 -2.6664 -1.8516 7 6 2.9740 -2.7785 0.1312 8 7 2.0757 -2.2513 0.9323 9 14 3.7608 -4.4176 0.5598 10 1 4.9830 -4.1832 1.3701 11 1 2.8001 -5.2390 1.3394 12 1 4.1248 -5.1337 -0.6892 13 6 3.3836 -0.1428 -2.3178 14 8 3.6952 -0.7897 -3.2954 15 6 3.2748 1.3574 -2.4103 16 6 4.2222 1.9897 -1.4778 17 7 4.9545 2.4758 -0.7582 18 6 1.8347 1.8039 -2.0842 19 6 1.5761 2.9864 -3.0517 20 6 2.2894 2.5300 -4.3487 21 6 3.5642 1.8191 -3.8494 22 1 -1.0499 0.0001 -0.0003 23 1 3.0088 1.0263 -0.0666 24 1 3.0095 -0.4543 0.9214 25 1 1.8209 -2.7135 1.7462 26 1 1.1314 0.9935 -2.2759 27 1 1.7634 2.1350 -1.0481 28 1 2.0226 3.9036 -2.6677 29 1 0.5080 3.1182 -3.2242 30 1 2.5492 3.3911 -4.9644 31 1 1.6597 1.8369 -4.9066 32 1 4.4055 2.5121 -3.8572 33 1 3.7828 0.9581 -4.4809 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491021006.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:43 Heat of formation + Delta-G solvation = 63.631187 kcal Electronic energy + Delta-G solvation = -18229.161346 eV Core-core repulsion = 15450.407638 eV Total energy + Delta-G solvation = -2778.753708 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.07176 -37.04779 -35.72465 -35.19118 -32.25909 -31.39888 -29.51340 -28.47146 -26.53538 -24.78137 -21.74506 -20.80724 -19.80419 -18.04500 -17.63003 -16.64095 -15.80909 -15.10571 -14.76175 -14.22043 -14.10455 -13.63125 -13.47833 -13.02473 -12.81159 -12.57895 -12.32726 -12.15030 -11.65882 -11.23832 -11.14100 -11.04399 -10.82643 -10.76017 -10.71494 -10.52565 -10.36725 -10.30949 -9.42419 -9.35970 -8.88684 -8.56474 -8.08482 -6.45613 -3.93626 2.93663 3.04337 3.11315 3.21207 3.25180 3.47942 3.76629 3.97972 4.09444 4.31701 4.65955 4.75493 4.85997 4.98885 5.23611 5.40420 5.60407 5.64583 5.67956 5.77324 5.84088 6.03878 6.08777 6.13978 6.30903 6.38183 6.49581 6.60328 6.79176 6.98948 7.45055 7.81699 7.86423 8.27657 8.74883 8.97448 9.20572 9.70557 10.52566 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026999 B = 0.008680 C = 0.007958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.843823 B = 3224.854295 C = 3517.421073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.103 4.103 3 C 0.220 3.780 4 N -0.426 5.426 5 C -0.313 4.313 6 H 0.112 0.888 7 C 0.032 3.968 8 N -0.859 5.859 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.452 3.548 14 O -0.569 6.569 15 C 0.018 3.982 16 C 0.230 3.770 17 N -0.439 5.439 18 C -0.108 4.108 19 C -0.126 4.126 20 C -0.121 4.121 21 C -0.107 4.107 22 H 0.200 0.800 23 H 0.058 0.942 24 H 0.122 0.878 25 H 0.271 0.729 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 7.611 -3.667 9.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.105 4.105 3 C 0.097 3.903 4 N -0.143 5.143 5 C -0.440 4.440 6 H 0.129 0.871 7 C -0.173 4.173 8 N -0.497 5.497 9 Si 0.752 3.248 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.192 1.192 13 C 0.239 3.761 14 O -0.453 6.453 15 C 0.011 3.989 16 C -0.087 4.087 17 N -0.115 5.115 18 C -0.146 4.146 19 C -0.163 4.163 20 C -0.158 4.158 21 C -0.146 4.146 22 H 0.217 0.783 23 H 0.075 0.925 24 H 0.139 0.861 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.891 7.928 -2.852 8.635 hybrid contribution -0.295 -1.069 0.341 1.160 sum -2.186 6.859 -2.511 7.625 Atomic orbital electron populations 1.24251 0.95290 1.05446 1.03073 1.22906 0.93985 0.95868 0.97747 1.18693 0.84782 0.93614 0.93212 1.43743 1.54579 1.08156 1.07792 1.19824 1.39091 0.82613 1.02465 0.87064 1.25312 0.95296 1.00157 0.96500 1.70094 1.25967 1.39894 1.13771 0.85923 0.78921 0.80991 0.78930 1.20208 1.20930 1.19208 1.19148 0.86328 0.86870 0.83796 1.90514 1.53945 1.65508 1.35348 1.19105 0.92385 0.94428 0.92980 1.28721 0.93635 0.93033 0.93331 1.81143 1.09962 1.10331 1.10077 1.22748 0.92593 0.99051 1.00255 1.22583 1.00689 0.97620 0.95423 1.22362 0.96425 0.99745 0.97278 1.22197 0.98137 1.01859 0.92370 0.78251 0.92456 0.86084 0.91825 0.88836 0.90392 0.91573 0.90902 0.91420 0.90905 0.91503 0.87633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.09 18.99 29.55 0.56 -4.53 16 2 C -0.10 -2.22 8.48 -37.12 -0.31 -2.54 16 3 C 0.22 4.93 4.59 -6.83 -0.03 4.89 16 4 N -0.43 -10.49 2.58 -117.93 -0.30 -10.79 16 5 C -0.31 -8.34 9.46 -14.93 -0.14 -8.48 16 6 H 0.11 3.10 7.29 -52.49 -0.38 2.72 16 7 C 0.03 0.80 5.03 -17.46 -0.09 0.72 16 8 N -0.86 -21.66 8.89 55.50 0.49 -21.17 16 9 Si 0.93 20.06 29.60 -169.99 -5.03 15.03 16 10 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.45 10.48 6.27 -10.99 -0.07 10.41 16 14 O -0.57 -14.66 14.81 5.55 0.08 -14.58 16 15 C 0.02 0.33 0.56 -157.33 -0.09 0.24 16 16 C 0.23 4.35 10.95 -20.76 -0.23 4.12 16 17 N -0.44 -8.71 18.54 42.15 0.78 -7.93 16 18 C -0.11 -1.71 3.74 -25.03 -0.09 -1.81 16 19 C -0.13 -1.55 6.91 -24.69 -0.17 -1.72 16 20 C -0.12 -1.49 6.83 -25.07 -0.17 -1.66 16 21 C -0.11 -1.66 6.03 -25.61 -0.15 -1.81 16 22 H 0.20 3.12 7.80 -54.09 -0.42 2.70 16 23 H 0.06 1.17 3.77 -51.93 -0.20 0.98 16 24 H 0.12 2.93 6.06 -51.93 -0.31 2.62 16 25 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 26 H 0.09 1.64 6.69 -51.93 -0.35 1.29 16 27 H 0.08 1.24 5.88 -51.93 -0.31 0.94 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.94 7.66 -51.93 -0.40 0.55 16 33 H 0.11 1.82 6.39 -51.93 -0.33 1.49 16 LS Contribution 276.01 15.07 4.16 4.16 Total: -1.00 -28.88 276.01 -4.33 -33.21 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -3.52 Total: 4.24 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -0.99 Total: -2.16 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.97 Total: -39.89 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.08 Total: -14.58 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.88 -4.33 -33.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491021006.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.840 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds