Wall clock time and date at job start Sun Mar 29 2020 22:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38403 * 119.42797 * 2 1 4 4 C 1.38278 * 119.33424 * 179.74410 * 3 2 1 5 5 C 1.40296 * 118.26439 * 0.47763 * 4 3 2 6 6 C 1.47151 * 120.58561 * 179.79965 * 5 4 3 7 7 C 1.34976 * 120.00301 * 316.05548 * 6 5 4 8 8 C 1.46229 * 119.99741 * 349.39185 * 7 6 5 9 9 O 1.21767 * 119.99904 * 353.22524 * 8 7 6 10 10 N 1.34775 * 120.00058 * 173.21997 * 8 7 6 11 11 C 1.46503 * 120.00074 * 0.02562 * 10 8 7 12 12 C 1.36712 * 119.99939 * 180.02562 * 10 8 7 13 13 H 1.07993 * 120.00452 * 29.83360 * 12 10 8 14 14 C 1.39128 * 119.99881 * 209.83449 * 12 10 8 15 15 N 1.31326 * 120.00101 * 7.58307 * 14 12 10 16 16 Si 1.86796 * 120.00197 * 187.58923 * 14 12 10 17 17 H 1.48498 * 109.47265 * 59.99623 * 16 14 12 18 18 H 1.48502 * 109.47146 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47226 * 299.99647 * 16 14 12 20 20 C 1.39838 * 118.82372 * 359.52802 * 5 4 3 21 21 N 1.31651 * 120.52062 * 0.23048 * 20 5 4 22 22 H 1.09004 * 109.47071 * 270.01503 * 1 2 3 23 23 H 1.08998 * 109.47301 * 30.01314 * 1 2 3 24 24 H 1.09004 * 109.47455 * 150.01923 * 1 2 3 25 25 H 1.08004 * 120.33020 * 0.03239 * 3 2 1 26 26 H 1.08006 * 120.86189 * 180.25935 * 4 3 2 27 27 H 1.08006 * 119.99860 * 136.05100 * 6 5 4 28 28 H 1.07991 * 120.00012 * 169.67470 * 7 6 5 29 29 H 1.08994 * 109.46862 * 84.14128 * 11 10 8 30 30 H 1.08997 * 109.47442 * 204.14641 * 11 10 8 31 31 H 1.09003 * 109.46922 * 324.14423 * 11 10 8 32 32 H 0.96992 * 120.00183 * 180.02562 * 15 14 12 33 33 H 1.07998 * 119.73785 * 180.24960 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.2055 0.0000 4 6 3.5698 1.2032 0.0054 5 6 4.2321 -0.0336 0.0004 6 6 5.7023 -0.0955 0.0013 7 6 6.4128 0.7206 -0.8056 8 6 5.7331 1.4968 -1.8419 9 8 4.5487 1.3163 -2.0594 10 7 6.4176 2.4120 -2.5562 11 6 7.8428 2.6288 -2.2948 12 6 5.7821 3.1381 -3.5246 13 1 4.7303 3.3632 -3.4280 14 6 6.4903 3.5871 -4.6348 15 7 7.7273 3.1909 -4.8288 16 14 5.6819 4.7536 -5.8493 17 1 5.2851 6.0011 -5.1483 18 1 6.6408 5.0801 -6.9352 19 1 4.4774 4.1073 -6.4296 20 6 3.4704 -1.2063 0.0003 21 7 2.1552 -1.1492 0.0003 22 1 -0.3633 0.0003 1.0277 23 1 -0.3634 0.8898 -0.5140 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6430 2.1385 0.0005 26 1 4.1253 2.1294 0.0097 27 1 6.2130 -0.7940 0.6478 28 1 7.4837 0.7967 -0.6889 29 1 8.4291 1.8938 -2.8461 30 1 8.1226 3.6320 -2.6163 31 1 8.0368 2.5220 -1.2275 32 1 8.2212 3.5042 -5.6025 33 1 3.9651 -2.1663 0.0006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492360188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:15 Heat of formation + Delta-G solvation = 31.554688 kcal Electronic energy + Delta-G solvation = -17356.480171 eV Core-core repulsion = 14576.335522 eV Total energy + Delta-G solvation = -2780.144649 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.74036 -38.38893 -35.14292 -33.58453 -31.85531 -31.76449 -30.66315 -27.27148 -26.30356 -24.74547 -22.89369 -22.55747 -20.78337 -18.05054 -17.05258 -16.61732 -15.98203 -15.53551 -14.90130 -14.41551 -14.01548 -13.86852 -13.81735 -13.13070 -12.74899 -12.62757 -12.16317 -12.03670 -11.87907 -11.71944 -11.38745 -11.30394 -11.06531 -10.91728 -10.50676 -10.44744 -9.77814 -9.13940 -9.03281 -8.73525 -8.38092 -7.69545 -7.51926 -6.46165 -4.00123 1.21499 1.93031 2.43355 3.14909 3.17708 3.21463 4.04388 4.34031 4.37955 4.76436 4.88482 5.08576 5.21704 5.28638 5.45178 5.58214 5.67958 5.78268 5.86263 5.92101 6.03945 6.21369 6.26691 6.34266 6.59514 6.67474 6.74253 6.84590 7.04051 7.10710 7.29533 7.41999 8.08383 8.40596 8.52133 9.09941 9.29770 9.94444 10.57765 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027867 B = 0.006415 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.521880 B = 4363.880437 C = 5133.192822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.117 3.883 3 C -0.186 4.186 4 C 0.020 3.980 5 C -0.098 4.098 6 C -0.084 4.084 7 C -0.166 4.166 8 C 0.455 3.545 9 O -0.580 6.580 10 N -0.427 5.427 11 C 0.107 3.893 12 C -0.301 4.301 13 H 0.097 0.903 14 C 0.033 3.967 15 N -0.873 5.873 16 Si 0.929 3.071 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.271 1.271 20 C 0.103 3.897 21 N -0.502 5.502 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.029 0.971 32 H 0.271 0.729 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 -2.446 9.101 9.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.021 4.021 3 C -0.206 4.206 4 C -0.006 4.006 5 C -0.100 4.100 6 C -0.106 4.106 7 C -0.187 4.187 8 C 0.246 3.754 9 O -0.467 6.467 10 N -0.143 5.143 11 C -0.037 4.037 12 C -0.429 4.429 13 H 0.115 0.885 14 C -0.172 4.172 15 N -0.511 5.511 16 Si 0.755 3.245 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.196 1.196 20 C -0.053 4.053 21 N -0.212 5.212 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.142 0.858 26 H 0.141 0.859 27 H 0.143 0.857 28 H 0.140 0.860 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.961 -3.201 8.781 10.150 hybrid contribution 0.700 1.373 -0.953 1.812 sum -3.262 -1.828 7.827 8.675 Atomic orbital electron populations 1.20628 0.89796 1.02923 1.02180 1.21093 0.96332 0.88614 0.96026 1.21638 0.94911 0.98561 1.05481 1.21457 0.93617 0.97235 0.88303 1.19742 0.94053 0.94191 1.02003 1.21916 0.91695 0.98428 0.98580 1.23354 0.99993 0.99123 0.96231 1.18179 0.88058 0.82443 0.86737 1.90686 1.15479 1.69027 1.71496 1.43587 1.08871 1.30682 1.31121 1.21549 0.82776 1.03425 0.95935 1.19604 0.96395 1.28178 0.98753 0.88484 1.25508 0.95940 0.98283 0.97485 1.69899 1.09999 1.42253 1.28961 0.85950 0.78978 0.80090 0.79462 1.19720 1.20760 1.19604 1.22655 0.89079 0.97143 0.96442 1.67288 1.10000 1.29074 1.14848 0.91164 0.91177 0.91035 0.85819 0.85883 0.85708 0.86003 0.92836 0.90723 0.95219 0.91850 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.16 36.01 0.37 -0.90 16 2 C 0.12 2.02 6.78 -82.48 -0.56 1.46 16 3 C -0.19 -3.29 9.72 -39.51 -0.38 -3.68 16 4 C 0.02 0.38 6.72 -38.79 -0.26 0.12 16 5 C -0.10 -1.81 4.55 -104.91 -0.48 -2.29 16 6 C -0.08 -1.41 9.84 -37.12 -0.37 -1.77 16 7 C -0.17 -3.11 9.06 -37.53 -0.34 -3.45 16 8 C 0.45 10.93 6.65 -13.05 -0.09 10.84 16 9 O -0.58 -15.49 11.88 5.13 0.06 -15.43 16 10 N -0.43 -10.75 2.99 -123.86 -0.37 -11.12 16 11 C 0.11 2.32 8.20 59.85 0.49 2.81 16 12 C -0.30 -8.21 9.12 -15.05 -0.14 -8.35 16 13 H 0.10 2.75 7.53 -52.49 -0.40 2.36 16 14 C 0.03 0.85 5.13 -17.44 -0.09 0.76 16 15 N -0.87 -22.88 10.91 55.51 0.61 -22.27 16 16 Si 0.93 20.41 29.56 -169.99 -5.02 15.39 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 C 0.10 1.83 10.97 -17.03 -0.19 1.65 16 21 N -0.50 -9.24 10.25 -9.05 -0.09 -9.34 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 26 H 0.12 2.44 7.11 -52.48 -0.37 2.07 16 27 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 28 H 0.12 1.96 6.47 -52.49 -0.34 1.62 16 29 H 0.05 1.19 7.83 -51.93 -0.41 0.78 16 30 H 0.07 1.70 6.93 -51.93 -0.36 1.34 16 31 H 0.03 0.53 6.55 -51.93 -0.34 0.19 16 32 H 0.27 6.72 8.31 -40.82 -0.34 6.39 16 33 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 283.05 15.07 4.27 4.27 Total: -1.00 -31.25 283.05 -6.47 -37.72 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -3.88 Total: 3.60 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.03 Total: -2.81 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.14 Total: -42.73 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.06 Total: -15.43 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.25 -6.47 -37.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492360188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.270 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds