Wall clock time and date at job start Sun Mar 29 2020 22:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38320 * 120.86874 * 2 1 4 4 C 1.38355 * 119.34183 * 180.23604 * 3 2 1 5 5 N 1.31982 * 121.14483 * 359.78148 * 4 3 2 6 6 C 1.31620 * 121.90737 * 359.97438 * 5 4 3 7 7 C 1.39881 * 120.52274 * 0.02562 * 6 5 4 8 8 C 1.47143 * 120.58825 * 179.97438 * 7 6 5 9 9 C 1.34975 * 120.00229 * 314.31580 * 8 7 6 10 10 C 1.46225 * 120.00147 * 348.53234 * 9 8 7 11 11 O 1.21768 * 119.99722 * 353.96229 * 10 9 8 12 12 N 1.34770 * 120.00253 * 173.96793 * 10 9 8 13 13 C 1.46496 * 119.99988 * 359.71956 * 12 10 9 14 14 C 1.36715 * 120.00328 * 179.97438 * 12 10 9 15 15 H 1.08003 * 119.99685 * 24.70330 * 14 12 10 16 16 C 1.39116 * 120.00554 * 204.70846 * 14 12 10 17 17 N 1.31326 * 119.99640 * 7.12345 * 16 14 12 18 18 Si 1.86800 * 120.00490 * 187.12416 * 16 14 12 19 19 H 1.48498 * 109.47123 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47279 * 119.99919 * 18 16 14 21 21 H 1.48505 * 109.47339 * 239.99886 * 18 16 14 22 22 H 1.08996 * 109.46972 * 270.23036 * 1 2 3 23 23 H 1.08998 * 109.46802 * 30.22546 * 1 2 3 24 24 H 1.09004 * 109.46811 * 150.22637 * 1 2 3 25 25 H 1.08003 * 120.32603 * 359.97438 * 3 2 1 26 26 H 1.07995 * 119.43022 * 179.76503 * 4 3 2 27 27 H 1.08009 * 119.73721 * 180.02562 * 6 5 4 28 28 H 1.08000 * 119.99784 * 134.32192 * 8 7 6 29 29 H 1.08000 * 119.99797 * 168.52477 * 9 8 7 30 30 H 1.09010 * 109.47279 * 93.32841 * 13 12 10 31 31 H 1.08998 * 109.47756 * 213.32480 * 13 12 10 32 32 H 1.09000 * 109.47270 * 333.33032 * 13 12 10 33 33 H 0.97006 * 120.00150 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1873 0.0000 4 6 3.5998 1.1504 -0.0050 5 7 4.2521 0.0030 -0.0054 6 6 3.6245 -1.1539 -0.0006 7 6 2.2266 -1.2039 0.0045 8 6 1.5236 -2.4966 0.0093 9 6 1.9155 -3.4810 -0.8268 10 6 2.8616 -3.1923 -1.9037 11 8 3.2112 -2.0453 -2.1157 12 7 3.3465 -4.1955 -2.6618 13 6 2.9305 -5.5761 -2.4029 14 6 4.2307 -3.9255 -3.6690 15 1 4.8419 -3.0360 -3.6269 16 6 4.3431 -4.7963 -4.7480 17 7 3.5060 -5.8007 -4.8712 18 14 5.6848 -4.5371 -6.0217 19 1 6.4899 -3.3439 -5.6567 20 1 6.5636 -5.7334 -6.0654 21 1 5.0671 -4.3277 -7.3558 22 1 -0.3633 0.0041 1.0276 23 1 -0.3633 0.8880 -0.5173 24 1 -0.3633 -0.8921 -0.5103 25 1 1.6963 2.1337 -0.0004 26 1 4.1553 2.0765 -0.0088 27 1 4.1935 -2.0720 -0.0008 28 1 0.6940 -2.6576 0.6818 29 1 1.5304 -4.4821 -0.7004 30 1 2.0781 -5.8235 -3.0357 31 1 3.7561 -6.2522 -2.6251 32 1 2.6476 -5.6801 -1.3554 33 1 3.5846 -6.4081 -5.6234 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492459244.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:40 Heat of formation + Delta-G solvation = 32.591989 kcal Electronic energy + Delta-G solvation = -17517.192389 eV Core-core repulsion = 14737.092721 eV Total energy + Delta-G solvation = -2780.099668 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.76132 -38.31332 -35.02430 -33.93168 -32.50275 -31.73636 -29.45273 -27.35539 -26.45886 -24.91159 -23.46768 -21.64323 -20.95851 -18.05069 -16.99948 -16.61172 -15.87584 -15.80659 -14.89946 -14.46831 -13.94424 -13.84610 -13.71741 -12.99081 -12.92768 -12.49387 -12.36202 -12.23123 -11.94850 -11.78188 -11.36904 -11.21810 -11.00795 -10.84239 -10.36371 -10.36098 -9.53167 -9.12486 -8.97282 -8.88559 -8.40567 -7.75559 -7.48242 -6.42690 -3.93576 1.24742 1.86937 2.39802 3.13812 3.21021 3.28849 4.06820 4.36415 4.43155 4.89992 5.01014 5.09672 5.13630 5.21094 5.35302 5.50374 5.66027 5.70870 5.84114 5.86911 6.00310 6.19144 6.31355 6.36849 6.52023 6.64223 6.78854 6.87100 6.97565 7.17988 7.32501 7.45431 8.08900 8.42613 8.63391 9.12984 9.33754 9.97311 10.58860 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.030249 B = 0.006517 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.439219 B = 4295.371685 C = 4830.191348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.044 4.044 3 C -0.193 4.193 4 C 0.092 3.908 5 N -0.499 5.499 6 C 0.188 3.812 7 C -0.087 4.087 8 C -0.088 4.088 9 C -0.162 4.162 10 C 0.450 3.550 11 O -0.582 6.582 12 N -0.427 5.427 13 C 0.107 3.893 14 C -0.295 4.295 15 H 0.102 0.898 16 C 0.029 3.971 17 N -0.875 5.875 18 Si 0.929 3.071 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.280 1.280 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.123 0.877 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.293 4.329 9.134 11.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.051 4.051 3 C -0.213 4.213 4 C -0.063 4.063 5 N -0.210 5.210 6 C 0.029 3.971 7 C -0.089 4.089 8 C -0.110 4.110 9 C -0.183 4.183 10 C 0.241 3.759 11 O -0.469 6.469 12 N -0.142 5.142 13 C -0.037 4.037 14 C -0.424 4.424 15 H 0.120 0.880 16 C -0.175 4.175 17 N -0.514 5.514 18 Si 0.756 3.244 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.206 1.206 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.141 0.859 26 H 0.160 0.840 27 H 0.161 0.839 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.210 4.679 8.816 10.832 hybrid contribution -0.490 -0.273 -0.966 1.117 sum -4.699 4.406 7.851 10.155 Atomic orbital electron populations 1.20743 0.91055 1.03017 1.01923 1.20273 0.95909 0.92432 0.96525 1.21668 0.95576 0.97829 1.06235 1.22543 0.91530 0.96096 0.96159 1.67536 1.41041 0.98444 1.13942 1.22659 0.90477 0.95279 0.88655 1.19670 0.94637 0.92953 1.01623 1.21832 0.98334 0.92005 0.98834 1.23390 1.00364 0.98738 0.95819 1.18089 0.85543 0.85561 0.86677 1.90696 1.63075 1.19969 1.73180 1.43643 1.37067 1.05293 1.28208 1.21628 1.01776 0.84087 0.96187 1.19802 1.14829 1.09611 0.98108 0.88018 1.25486 0.98066 0.95983 0.97937 1.69953 1.35035 1.15639 1.30733 0.85797 0.80170 0.78615 0.79848 1.18994 1.20492 1.20565 0.91211 0.91591 0.91120 0.85936 0.83959 0.83888 0.85917 0.85874 0.92062 0.91256 0.95072 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.68 36.01 0.35 -1.04 16 2 C -0.04 -0.72 5.96 -103.83 -0.62 -1.34 16 3 C -0.19 -3.01 9.80 -39.51 -0.39 -3.40 16 4 C 0.09 1.57 11.17 -17.44 -0.19 1.37 16 5 N -0.50 -10.17 10.34 -12.82 -0.13 -10.31 16 6 C 0.19 3.88 7.87 -17.03 -0.13 3.74 16 7 C -0.09 -1.61 4.45 -104.91 -0.47 -2.08 16 8 C -0.09 -1.47 8.46 -37.13 -0.31 -1.78 16 9 C -0.16 -3.04 9.06 -37.53 -0.34 -3.38 16 10 C 0.45 10.92 6.71 -13.06 -0.09 10.83 16 11 O -0.58 -15.86 12.00 5.13 0.06 -15.79 16 12 N -0.43 -10.87 3.01 -123.86 -0.37 -11.25 16 13 C 0.11 2.34 8.42 59.84 0.50 2.85 16 14 C -0.29 -8.19 9.25 -15.05 -0.14 -8.33 16 15 H 0.10 2.99 7.43 -52.48 -0.39 2.60 16 16 C 0.03 0.77 5.20 -17.44 -0.09 0.68 16 17 N -0.88 -22.95 10.52 55.50 0.58 -22.36 16 18 Si 0.93 20.74 29.56 -169.99 -5.02 15.72 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 24 H 0.07 0.92 7.20 -51.93 -0.37 0.54 16 25 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 26 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 27 H 0.14 3.05 7.25 -52.48 -0.38 2.67 16 28 H 0.12 1.58 8.04 -52.49 -0.42 1.15 16 29 H 0.12 1.97 6.25 -52.49 -0.33 1.64 16 30 H 0.06 1.40 7.45 -51.92 -0.39 1.01 16 31 H 0.07 1.59 7.17 -51.93 -0.37 1.22 16 32 H 0.03 0.56 6.00 -51.93 -0.31 0.24 16 33 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 280.23 15.07 4.22 4.22 Total: -1.00 -31.73 280.23 -6.37 -38.10 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -3.79 Total: 3.55 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.92 Total: -1.88 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.08 Total: -43.92 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.06 Total: -15.79 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.73 -6.37 -38.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492459244.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.691 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds