Wall clock time and date at job start Sun Mar 29 2020 22:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38320 * 120.86874 * 2 1 4 4 C 1.38355 * 119.34183 * 180.23604 * 3 2 1 5 5 N 1.31982 * 121.14483 * 359.78148 * 4 3 2 6 6 C 1.31620 * 121.90737 * 359.97438 * 5 4 3 7 7 C 1.39881 * 120.52274 * 0.02562 * 6 5 4 8 8 C 1.47143 * 120.58825 * 179.97438 * 7 6 5 9 9 C 1.34975 * 120.00229 * 314.31580 * 8 7 6 10 10 C 1.46225 * 120.00147 * 348.53234 * 9 8 7 11 11 O 1.21768 * 119.99722 * 353.96229 * 10 9 8 12 12 N 1.34770 * 120.00253 * 173.96793 * 10 9 8 13 13 C 1.46496 * 119.99988 * 359.71956 * 12 10 9 14 14 C 1.36715 * 120.00328 * 179.97438 * 12 10 9 15 15 H 1.08003 * 119.99685 * 24.70330 * 14 12 10 16 16 C 1.39116 * 120.00554 * 204.70846 * 14 12 10 17 17 N 1.31326 * 119.99640 * 7.12345 * 16 14 12 18 18 Si 1.86800 * 120.00490 * 187.12416 * 16 14 12 19 19 H 1.48498 * 109.47123 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47279 * 119.99919 * 18 16 14 21 21 H 1.48505 * 109.47339 * 239.99886 * 18 16 14 22 22 H 1.08996 * 109.46972 * 270.23036 * 1 2 3 23 23 H 1.08998 * 109.46802 * 30.22546 * 1 2 3 24 24 H 1.09004 * 109.46811 * 150.22637 * 1 2 3 25 25 H 1.08003 * 120.32603 * 359.97438 * 3 2 1 26 26 H 1.07995 * 119.43022 * 179.76503 * 4 3 2 27 27 H 1.08009 * 119.73721 * 180.02562 * 6 5 4 28 28 H 1.08000 * 119.99784 * 134.32192 * 8 7 6 29 29 H 1.08000 * 119.99797 * 168.52477 * 9 8 7 30 30 H 1.09010 * 109.47279 * 93.32841 * 13 12 10 31 31 H 1.08998 * 109.47756 * 213.32480 * 13 12 10 32 32 H 1.09000 * 109.47270 * 333.33032 * 13 12 10 33 33 H 0.97006 * 120.00150 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1873 0.0000 4 6 3.5998 1.1504 -0.0050 5 7 4.2521 0.0030 -0.0054 6 6 3.6245 -1.1539 -0.0006 7 6 2.2266 -1.2039 0.0045 8 6 1.5236 -2.4966 0.0093 9 6 1.9155 -3.4810 -0.8268 10 6 2.8616 -3.1923 -1.9037 11 8 3.2112 -2.0453 -2.1157 12 7 3.3465 -4.1955 -2.6618 13 6 2.9305 -5.5761 -2.4029 14 6 4.2307 -3.9255 -3.6690 15 1 4.8419 -3.0360 -3.6269 16 6 4.3431 -4.7963 -4.7480 17 7 3.5060 -5.8007 -4.8712 18 14 5.6848 -4.5371 -6.0217 19 1 6.4899 -3.3439 -5.6567 20 1 6.5636 -5.7334 -6.0654 21 1 5.0671 -4.3277 -7.3558 22 1 -0.3633 0.0041 1.0276 23 1 -0.3633 0.8880 -0.5173 24 1 -0.3633 -0.8921 -0.5103 25 1 1.6963 2.1337 -0.0004 26 1 4.1553 2.0765 -0.0088 27 1 4.1935 -2.0720 -0.0008 28 1 0.6940 -2.6576 0.6818 29 1 1.5304 -4.4821 -0.7004 30 1 2.0781 -5.8235 -3.0357 31 1 3.7561 -6.2522 -2.6251 32 1 2.6476 -5.6801 -1.3554 33 1 3.5846 -6.4081 -5.6234 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492459244.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:39 Heat of formation + Delta-G solvation = 12.013166 kcal Electronic energy + Delta-G solvation = -17518.084754 eV Core-core repulsion = 14737.092721 eV Total energy + Delta-G solvation = -2780.992033 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.21670 -40.06066 -36.84902 -35.38113 -33.94155 -33.64474 -30.87402 -28.61297 -28.22578 -26.68307 -25.02262 -23.04713 -22.46531 -19.70104 -18.90404 -18.27141 -17.36122 -17.17815 -16.67196 -16.12268 -15.70974 -15.38615 -15.14419 -14.51798 -14.32550 -13.78360 -13.67358 -13.57735 -13.46072 -13.35439 -13.10377 -13.00190 -12.72100 -12.38287 -12.16378 -12.11756 -11.08060 -10.94124 -10.56198 -10.20242 -10.02615 -9.64966 -9.03979 -8.37736 -6.00515 -0.15722 0.52970 0.97359 1.36233 1.36944 1.50287 2.23691 2.53723 3.03451 3.15135 3.20119 3.68623 3.89704 3.96574 4.04729 4.12429 4.34563 4.51428 4.68816 4.70159 4.75125 4.86559 4.98154 5.03536 5.11685 5.22596 5.30468 5.37799 5.38364 5.50182 5.60784 5.98709 6.10811 6.49177 7.16071 7.23188 7.46195 8.08106 8.62398 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.030249 B = 0.006517 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.439219 B = 4295.371685 C = 4830.191348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.045 4.045 3 C -0.188 4.188 4 C 0.079 3.921 5 N -0.537 5.537 6 C 0.162 3.838 7 C -0.116 4.116 8 C -0.045 4.045 9 C -0.190 4.190 10 C 0.449 3.551 11 O -0.620 6.620 12 N -0.452 5.452 13 C 0.119 3.881 14 C -0.336 4.336 15 H 0.067 0.933 16 C -0.002 4.002 17 N -0.892 5.892 18 Si 0.988 3.012 19 H -0.278 1.278 20 H -0.262 1.262 21 H -0.273 1.273 22 H 0.101 0.899 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.164 0.836 26 H 0.172 0.828 27 H 0.117 0.883 28 H 0.176 0.824 29 H 0.156 0.844 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.597 5.201 10.362 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.052 4.052 3 C -0.208 4.208 4 C -0.076 4.076 5 N -0.248 5.248 6 C 0.004 3.996 7 C -0.118 4.118 8 C -0.066 4.066 9 C -0.211 4.211 10 C 0.241 3.759 11 O -0.509 6.509 12 N -0.169 5.169 13 C -0.024 4.024 14 C -0.464 4.464 15 H 0.085 0.915 16 C -0.204 4.204 17 N -0.530 5.530 18 Si 0.812 3.188 19 H -0.203 1.203 20 H -0.187 1.187 21 H -0.198 1.198 22 H 0.120 0.880 23 H 0.101 0.899 24 H 0.086 0.914 25 H 0.182 0.818 26 H 0.189 0.811 27 H 0.134 0.866 28 H 0.193 0.807 29 H 0.174 0.826 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.532 5.527 10.066 13.211 hybrid contribution 0.162 -0.284 -1.165 1.210 sum -6.370 5.243 8.901 12.136 Atomic orbital electron populations 1.20854 0.87719 1.03770 1.04160 1.20850 0.98274 0.91681 0.94440 1.22148 0.95033 0.99485 1.04101 1.23157 0.93034 0.96015 0.95395 1.67447 1.42543 0.99441 1.15337 1.22450 0.91689 0.94760 0.90727 1.19964 0.94068 0.95049 1.02759 1.22403 0.97220 0.89948 0.97032 1.23294 1.00643 1.01199 0.95947 1.19029 0.84993 0.84821 0.87011 1.90666 1.64239 1.21639 1.74366 1.43822 1.37804 1.06781 1.28461 1.21537 1.00345 0.82102 0.98394 1.19584 1.16818 1.09670 1.00355 0.91540 1.26128 0.99812 0.95543 0.98943 1.70012 1.35781 1.15906 1.31313 0.84957 0.77850 0.78461 0.77579 1.20322 1.18679 1.19846 0.88022 0.89869 0.91404 0.81820 0.81086 0.86588 0.80673 0.82610 0.93289 0.93105 0.90876 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 9.68 71.24 0.69 -1.50 16 2 C -0.04 -1.34 5.96 -19.35 -0.12 -1.45 16 3 C -0.19 -5.29 9.80 22.32 0.22 -5.07 16 4 C 0.08 2.59 11.17 84.70 0.95 3.54 16 5 N -0.54 -22.37 10.34 -194.47 -2.01 -24.38 16 6 C 0.16 6.86 7.87 85.12 0.67 7.53 16 7 C -0.12 -4.17 4.45 -20.05 -0.09 -4.26 16 8 C -0.05 -1.37 8.46 23.86 0.20 -1.17 16 9 C -0.19 -6.85 9.06 23.60 0.21 -6.64 16 10 C 0.45 22.33 6.71 86.32 0.58 22.91 16 11 O -0.62 -35.20 12.00 -4.56 -0.05 -35.25 16 12 N -0.45 -23.88 3.01 -663.98 -2.00 -25.87 16 13 C 0.12 5.27 8.42 127.77 1.08 6.35 16 14 C -0.34 -19.65 9.25 84.14 0.78 -18.88 16 15 H 0.07 4.23 7.43 -2.91 -0.02 4.21 16 16 C 0.00 -0.11 5.20 84.98 0.44 0.33 16 17 N -0.89 -47.62 10.52 21.69 0.23 -47.39 16 18 Si 0.99 43.75 29.56 68.60 2.03 45.78 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 24 H 0.07 1.44 7.20 -2.38 -0.02 1.42 16 25 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 26 H 0.17 4.39 8.06 -2.91 -0.02 4.36 16 27 H 0.12 5.33 7.25 -2.91 -0.02 5.31 16 28 H 0.18 3.49 8.04 -2.91 -0.02 3.46 16 29 H 0.16 4.50 6.25 -2.91 -0.02 4.48 16 30 H 0.05 2.25 7.45 -2.38 -0.02 2.23 16 31 H 0.05 2.39 7.17 -2.39 -0.02 2.37 16 32 H 0.07 2.53 6.00 -2.39 -0.01 2.52 16 33 H 0.27 13.66 8.31 -92.70 -0.77 12.89 16 Total: -1.00 -74.18 280.23 4.92 -69.26 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 1.11 Total: 16.16 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 5.61 Total: 1.69 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -3.78 Total: -97.64 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.05 Total: -35.25 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -74.18 4.92 -69.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492459244.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.277 kcal (2) G-P(sol) polarization free energy of solvation -74.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds