Wall clock time and date at job start Sun Mar 29 2020 22:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38316 * 120.86945 * 2 1 4 4 C 1.38367 * 119.34226 * 180.02562 * 3 2 1 5 5 N 1.31973 * 121.14354 * 359.97438 * 4 3 2 6 6 C 1.31628 * 121.91192 * 0.02562 * 5 4 3 7 7 C 1.39878 * 120.51777 * 359.97438 * 6 5 4 8 8 C 1.47147 * 120.58868 * 179.97438 * 7 6 5 9 9 C 1.34975 * 120.00028 * 0.02562 * 8 7 6 10 10 C 1.46223 * 119.99615 * 179.97438 * 9 8 7 11 11 O 1.21752 * 120.00524 * 0.02562 * 10 9 8 12 12 N 1.34786 * 119.99614 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99958 * 359.97438 * 12 10 9 14 14 C 1.36716 * 119.99856 * 179.97438 * 12 10 9 15 15 H 1.07999 * 119.99498 * 25.62150 * 14 12 10 16 16 C 1.39119 * 120.00053 * 205.61819 * 14 12 10 17 17 N 1.31322 * 120.00100 * 11.36291 * 16 14 12 18 18 Si 1.86795 * 120.00004 * 191.36909 * 16 14 12 19 19 H 1.48493 * 109.47294 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47549 * 119.99702 * 18 16 14 21 21 H 1.48498 * 109.47017 * 239.99635 * 18 16 14 22 22 H 1.08998 * 109.47140 * 269.98781 * 1 2 3 23 23 H 1.09004 * 109.46463 * 29.98330 * 1 2 3 24 24 H 1.08998 * 109.47082 * 149.98022 * 1 2 3 25 25 H 1.08003 * 120.33507 * 359.97438 * 3 2 1 26 26 H 1.07996 * 119.42768 * 179.97438 * 4 3 2 27 27 H 1.07993 * 119.74070 * 180.27493 * 6 5 4 28 28 H 1.07997 * 119.99705 * 180.02562 * 8 7 6 29 29 H 1.07996 * 119.99742 * 359.97438 * 9 8 7 30 30 H 1.08998 * 109.46872 * 84.92691 * 13 12 10 31 31 H 1.08997 * 109.46950 * 204.92868 * 13 12 10 32 32 H 1.09002 * 109.47034 * 324.92888 * 13 12 10 33 33 H 0.96994 * 120.00444 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1872 0.0000 4 6 3.5999 1.1503 -0.0005 5 7 4.2520 0.0030 -0.0005 6 6 3.6245 -1.1540 -0.0005 7 6 2.2267 -1.2040 0.0000 8 6 1.5236 -2.4966 -0.0006 9 6 2.2280 -3.6480 -0.0011 10 6 1.5292 -4.9325 -0.0011 11 8 0.3121 -4.9634 -0.0011 12 7 2.2326 -6.0822 -0.0011 13 6 3.6971 -6.0450 -0.0017 14 6 1.5793 -7.2832 -0.0006 15 1 0.5803 -7.3546 -0.4046 16 6 2.2014 -8.4133 0.5204 17 7 3.3131 -8.2922 1.2089 18 14 1.4556 -10.1028 0.2404 19 1 0.2119 -9.9684 -0.5598 20 1 2.4253 -10.9571 -0.4911 21 1 1.1362 -10.7261 1.5498 22 1 -0.3633 -0.0002 1.0276 23 1 -0.3632 0.8902 -0.5136 24 1 -0.3633 -0.8898 -0.5141 25 1 1.6964 2.1337 -0.0004 26 1 4.1553 2.0765 -0.0010 27 1 4.1934 -2.0720 0.0039 28 1 0.4439 -2.5240 -0.0006 29 1 3.3076 -3.6205 -0.0015 30 1 4.0584 -5.9446 1.0218 31 1 4.0838 -6.9674 -0.4348 32 1 4.0387 -5.1950 -0.5925 33 1 3.7471 -9.0801 1.5718 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492459246.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:41 Heat of formation + Delta-G solvation = 0.391896 kcal Electronic energy + Delta-G solvation = -16824.082060 eV Core-core repulsion = 14042.586091 eV Total energy + Delta-G solvation = -2781.495969 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.21230 -40.30636 -36.83562 -35.66540 -34.36556 -33.66063 -30.91693 -28.78065 -28.24596 -26.82068 -25.28433 -23.23153 -22.15579 -19.93148 -18.98934 -18.41878 -17.38574 -17.27161 -16.53131 -16.05535 -15.88325 -15.67958 -15.24079 -14.73664 -14.63596 -13.85170 -13.74833 -13.63579 -13.53663 -13.33945 -13.19358 -12.87422 -12.65892 -12.31379 -12.30092 -12.11347 -11.60676 -11.05833 -10.51312 -10.38512 -10.31010 -9.74706 -9.33197 -8.41562 -6.02860 -0.49814 0.27809 1.02592 1.40286 1.41404 1.54812 2.24869 2.46297 2.91208 3.02719 3.15125 3.48921 3.72379 3.78502 3.86352 3.96048 4.21152 4.34547 4.56314 4.61606 4.66983 4.73481 4.86646 4.90795 4.97739 5.15402 5.21913 5.30016 5.37720 5.43590 5.53060 5.78075 6.07454 6.44804 7.00361 7.10665 7.38287 7.98692 8.61526 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045442 B = 0.004670 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.019334 B = 5994.860678 C = 6537.055873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.034 4.034 3 C -0.167 4.167 4 C 0.095 3.905 5 N -0.512 5.512 6 C 0.102 3.898 7 C -0.127 4.127 8 C -0.049 4.049 9 C -0.179 4.179 10 C 0.452 3.548 11 O -0.643 6.643 12 N -0.447 5.447 13 C 0.116 3.884 14 C -0.345 4.345 15 H 0.073 0.927 16 C -0.001 4.001 17 N -0.890 5.890 18 Si 0.994 3.006 19 H -0.272 1.272 20 H -0.262 1.262 21 H -0.274 1.274 22 H 0.086 0.914 23 H 0.099 0.901 24 H 0.063 0.937 25 H 0.173 0.827 26 H 0.188 0.812 27 H 0.161 0.839 28 H 0.124 0.876 29 H 0.144 0.856 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.716 16.357 -2.209 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.042 4.042 3 C -0.186 4.186 4 C -0.061 4.061 5 N -0.221 5.221 6 C -0.055 4.055 7 C -0.129 4.129 8 C -0.071 4.071 9 C -0.199 4.199 10 C 0.245 3.755 11 O -0.534 6.534 12 N -0.163 5.163 13 C -0.027 4.027 14 C -0.473 4.473 15 H 0.091 0.909 16 C -0.204 4.204 17 N -0.527 5.527 18 Si 0.817 3.183 19 H -0.197 1.197 20 H -0.187 1.187 21 H -0.199 1.199 22 H 0.105 0.895 23 H 0.118 0.882 24 H 0.082 0.918 25 H 0.190 0.810 26 H 0.205 0.795 27 H 0.178 0.822 28 H 0.142 0.858 29 H 0.162 0.838 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.252 16.157 -2.112 16.450 hybrid contribution -1.098 -1.275 0.104 1.686 sum 1.154 14.882 -2.008 15.061 Atomic orbital electron populations 1.20962 0.88803 1.04293 1.03863 1.20869 0.97934 0.92020 0.93329 1.22328 0.95357 0.99181 1.01774 1.23460 0.92566 0.96641 0.93410 1.67669 1.41802 0.99004 1.13613 1.23216 0.91008 0.96814 0.94467 1.19925 0.94819 0.93320 1.04883 1.22078 0.99735 0.90132 0.95106 1.23070 1.00823 0.91506 1.04513 1.18771 0.87247 0.85520 0.83966 1.90572 1.15589 1.88232 1.58985 1.43753 1.06919 1.04855 1.60753 1.21546 0.79285 1.01076 1.00803 1.19707 1.01775 0.85882 1.39968 0.90893 1.26220 0.96742 1.03445 0.93955 1.70011 1.18875 1.31951 1.31873 0.84870 0.78449 0.76626 0.78359 1.19695 1.18672 1.19917 0.89517 0.88200 0.91775 0.80977 0.79537 0.82180 0.85842 0.83831 0.93528 0.91937 0.91335 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 9.60 71.24 0.68 -1.59 16 2 C -0.03 -0.76 5.96 -19.35 -0.12 -0.88 16 3 C -0.17 -2.89 9.80 22.32 0.22 -2.68 16 4 C 0.10 1.84 11.17 84.70 0.95 2.78 16 5 N -0.51 -13.37 10.34 -194.47 -2.01 -15.38 16 6 C 0.10 2.84 10.59 85.12 0.90 3.74 16 7 C -0.13 -3.63 5.89 -20.05 -0.12 -3.75 16 8 C -0.05 -1.70 8.94 23.86 0.21 -1.49 16 9 C -0.18 -7.06 8.61 23.60 0.20 -6.85 16 10 C 0.45 23.58 7.55 86.32 0.65 24.23 16 11 O -0.64 -38.28 15.95 -4.51 -0.07 -38.35 16 12 N -0.45 -24.05 3.00 -663.98 -1.99 -26.04 16 13 C 0.12 5.21 8.28 127.77 1.06 6.27 16 14 C -0.35 -20.09 9.21 84.14 0.77 -19.32 16 15 H 0.07 4.53 7.46 -2.91 -0.02 4.51 16 16 C 0.00 -0.04 5.06 84.98 0.43 0.39 16 17 N -0.89 -47.34 10.83 21.69 0.23 -47.11 16 18 Si 0.99 42.44 29.57 68.60 2.03 44.47 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.10 1.25 8.10 -2.39 -0.02 1.23 16 24 H 0.06 1.41 6.46 -2.39 -0.02 1.39 16 25 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 26 H 0.19 2.19 8.06 -2.91 -0.02 2.17 16 27 H 0.16 4.21 6.19 -2.91 -0.02 4.19 16 28 H 0.12 4.55 5.95 -2.91 -0.02 4.53 16 29 H 0.14 4.80 4.36 -2.91 -0.01 4.79 16 30 H 0.05 2.13 7.85 -2.39 -0.02 2.11 16 31 H 0.06 2.95 6.79 -2.39 -0.02 2.94 16 32 H 0.07 2.48 6.39 -2.39 -0.02 2.47 16 33 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -71.87 283.80 5.17 -66.70 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 1.13 Total: 14.83 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 5.85 Total: 0.88 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -3.77 Total: -88.53 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -0.07 Total: -38.35 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -71.87 5.17 -66.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492459246.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.093 kcal (2) G-P(sol) polarization free energy of solvation -71.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds