Wall clock time and date at job start Sun Mar 29 2020 22:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86803 * 119.99419 * 2 1 4 4 H 1.48504 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47386 * 299.99925 * 3 2 1 6 6 H 1.48500 * 109.46946 * 60.00291 * 3 2 1 7 7 C 1.40023 * 120.00662 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00530 * 196.98332 * 7 2 1 9 9 C 1.41551 * 120.00025 * 16.97829 * 7 2 1 10 10 C 1.41166 * 120.99990 * 203.58531 * 9 7 2 11 11 C 1.37590 * 119.01720 * 179.97438 * 10 9 7 12 12 N 1.32083 * 121.10715 * 359.97438 * 11 10 9 13 13 C 1.32463 * 122.23070 * 359.97438 * 12 11 10 14 14 N 1.39474 * 119.58052 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99813 * 5.24206 * 14 13 12 16 16 O 1.21282 * 119.99994 * 355.14412 * 15 14 13 17 17 C 1.50697 * 120.00297 * 175.15277 * 15 14 13 18 18 C 1.52998 * 109.47139 * 179.97438 * 17 15 14 19 19 C 1.53005 * 117.49557 * 243.74267 * 18 17 15 20 20 C 1.53005 * 117.49686 * 175.08656 * 18 17 15 21 21 C 1.38596 * 120.84570 * 0.26361 * 13 12 11 22 22 H 0.96988 * 120.00277 * 0.02562 * 1 2 3 23 23 H 1.08005 * 120.49317 * 359.97438 * 10 9 7 24 24 H 1.07997 * 119.44322 * 180.02562 * 11 10 9 25 25 H 0.96993 * 120.00349 * 185.23997 * 14 13 12 26 26 H 1.08996 * 109.47518 * 59.99491 * 17 15 14 27 27 H 1.09005 * 109.46930 * 299.99629 * 17 15 14 28 28 H 1.09003 * 115.55288 * 29.41221 * 18 17 15 29 29 H 1.08999 * 117.49690 * 359.97438 * 19 18 17 30 30 H 1.09004 * 117.49847 * 145.02384 * 19 18 17 31 31 H 1.08999 * 117.49465 * 214.97735 * 20 18 17 32 32 H 1.08993 * 117.50064 * 359.97438 * 20 18 17 33 33 H 1.07992 * 120.60688 * 179.71978 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 3.7014 1.3466 -0.0006 5 1 1.8826 2.3966 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0077 -1.2126 -0.0005 8 1 3.0524 -1.2331 0.2726 9 6 1.3464 -2.4116 -0.3590 10 6 1.8238 -3.6649 0.0815 11 6 1.1489 -4.8047 -0.2909 12 7 0.0688 -4.7413 -1.0485 13 6 -0.4201 -3.5910 -1.4870 14 7 -1.5642 -3.5884 -2.2847 15 6 -2.2257 -4.7394 -2.5178 16 8 -1.7784 -5.7896 -2.1080 17 6 -3.5210 -4.7214 -3.2878 18 6 -4.0606 -6.1477 -3.4114 19 6 -4.1661 -6.7438 -4.8166 20 6 -5.4327 -6.3299 -4.0634 21 6 0.1941 -2.3901 -1.1681 22 1 -0.4850 0.8399 -0.0004 23 1 2.7058 -3.7283 0.7017 24 1 1.5079 -5.7671 0.0426 25 1 -1.8838 -2.7585 -2.6717 26 1 -3.3467 -4.3118 -4.2827 27 1 -4.2476 -4.1020 -2.7620 28 1 -3.7967 -6.8225 -2.5970 29 1 -3.8514 -6.1195 -5.6530 30 1 -3.9720 -7.8107 -4.9267 31 1 -6.0714 -7.1247 -3.6781 32 1 -5.9512 -5.4336 -4.4038 33 1 -0.2052 -1.4548 -1.5314 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531926071.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:30 Heat of formation + Delta-G solvation = 18.207249 kcal Electronic energy + Delta-G solvation = -16877.630382 eV Core-core repulsion = 14096.906944 eV Total energy + Delta-G solvation = -2780.723437 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.63338 -38.04828 -36.78665 -34.29809 -33.69700 -30.60914 -29.85940 -27.93354 -25.99771 -22.42531 -22.25957 -21.88060 -20.41688 -19.49535 -17.64858 -17.04965 -15.73598 -15.54097 -15.14913 -14.73624 -14.21343 -14.14256 -13.75386 -13.35967 -12.88671 -12.71258 -12.57752 -11.92438 -11.54868 -11.46145 -11.37385 -11.21849 -10.90627 -10.35750 -10.28421 -10.14462 -9.96941 -9.72776 -9.36298 -9.29274 -8.00928 -7.70874 -7.02772 -6.82133 -4.62204 2.57569 2.76396 3.00657 3.06176 3.20020 3.49092 3.60058 3.83557 3.89019 4.65802 4.71914 4.87204 4.93303 5.20448 5.50432 5.57410 5.60404 5.67021 5.75703 5.85576 6.05544 6.07436 6.36495 6.59830 6.66740 6.81130 6.94482 7.09585 7.39425 7.47056 7.78265 7.94434 8.22763 8.43019 8.70378 8.73731 8.93192 9.70391 10.04786 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036570 B = 0.004956 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.474479 B = 5647.857619 C = 6276.028967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.456 4.456 8 H 0.083 0.917 9 C 0.143 3.857 10 C -0.285 4.285 11 C 0.119 3.881 12 N -0.555 5.555 13 C 0.337 3.663 14 N -0.661 5.661 15 C 0.499 3.501 16 O -0.481 6.481 17 C -0.111 4.111 18 C -0.135 4.135 19 C -0.179 4.179 20 C -0.183 4.183 21 C -0.245 4.245 22 H 0.281 0.719 23 H 0.102 0.898 24 H 0.123 0.877 25 H 0.407 0.593 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.320 -2.031 -6.713 10.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.101 0.899 9 C 0.135 3.865 10 C -0.309 4.309 11 C -0.036 4.036 12 N -0.274 5.274 13 C 0.113 3.887 14 N -0.307 5.307 15 C 0.283 3.717 16 O -0.351 6.351 17 C -0.151 4.151 18 C -0.153 4.153 19 C -0.216 4.216 20 C -0.220 4.220 21 C -0.271 4.271 22 H 0.092 0.908 23 H 0.120 0.880 24 H 0.141 0.859 25 H 0.242 0.758 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.137 0.863 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.701 -3.471 -6.661 10.757 hybrid contribution 0.569 2.132 0.107 2.210 sum -7.132 -1.339 -6.554 9.778 Atomic orbital electron populations 1.69790 1.07719 1.29309 1.34489 1.25959 0.94748 1.01503 0.91849 0.86223 0.81069 0.80607 0.78640 1.18254 1.19611 1.19869 1.19615 0.97984 0.90735 1.40348 0.89925 1.17570 0.89841 0.92280 0.86818 1.21889 1.05300 0.93892 1.09856 1.21769 0.90965 0.96822 0.94001 1.67230 1.15445 1.26518 1.18220 1.18212 0.87279 0.90787 0.92471 1.43487 1.26401 1.10733 1.50074 1.20586 0.85858 0.84170 0.81059 1.90759 1.66630 1.29753 1.47937 1.21245 0.95483 0.97138 1.01236 1.22058 0.98868 0.96914 0.97496 1.23024 1.01820 1.01534 0.95241 1.22996 0.90864 1.03267 1.04920 1.21541 1.02610 0.95554 1.07377 0.90771 0.88004 0.85913 0.75845 0.89235 0.88738 0.86331 0.88957 0.88888 0.88874 0.88907 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.35 10.93 55.55 0.61 -18.75 16 2 C 0.08 1.89 5.20 -17.34 -0.09 1.80 16 3 Si 0.91 17.80 29.59 -169.99 -5.03 12.77 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 7 C -0.46 -11.74 9.12 -37.65 -0.34 -12.08 16 8 H 0.08 2.04 7.90 -52.48 -0.41 1.63 16 9 C 0.14 3.79 5.60 -106.55 -0.60 3.19 16 10 C -0.29 -7.09 9.90 -38.71 -0.38 -7.47 16 11 C 0.12 2.90 11.15 -17.68 -0.20 2.70 16 12 N -0.55 -14.40 7.85 -12.52 -0.10 -14.50 16 13 C 0.34 8.28 7.42 -154.71 -1.15 7.13 16 14 N -0.66 -13.01 5.39 -11.49 -0.06 -13.07 16 15 C 0.50 9.40 7.79 -10.99 -0.09 9.31 16 16 O -0.48 -11.13 13.82 5.56 0.08 -11.05 16 17 C -0.11 -1.44 5.98 -27.89 -0.17 -1.61 16 18 C -0.13 -1.75 5.41 -90.62 -0.49 -2.24 16 19 C -0.18 -1.97 10.18 -26.69 -0.27 -2.25 16 20 C -0.18 -1.84 10.25 -26.69 -0.27 -2.11 16 21 C -0.25 -6.26 8.62 -38.48 -0.33 -6.59 16 22 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 23 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 24 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 25 H 0.41 6.48 8.70 -40.82 -0.36 6.13 16 26 H 0.09 0.97 7.87 -51.93 -0.41 0.56 16 27 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.12 1.81 7.31 -51.93 -0.38 1.43 16 29 H 0.09 0.93 8.03 -51.93 -0.42 0.52 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.13 3.20 6.20 -52.49 -0.33 2.87 16 LS Contribution 288.51 15.07 4.35 4.35 Total: -1.00 -31.15 288.51 -8.51 -39.66 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -3.97 Total: 10.80 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -4.38 Total: -10.21 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.45 Total: -46.31 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.15 -8.51 -39.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531926071.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.866 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds