Wall clock time and date at job start Sun Mar 29 2020 22:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86803 * 119.99419 * 2 1 4 4 H 1.48504 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47386 * 299.99925 * 3 2 1 6 6 H 1.48500 * 109.46946 * 60.00291 * 3 2 1 7 7 C 1.40023 * 120.00662 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00530 * 196.98332 * 7 2 1 9 9 C 1.41551 * 120.00025 * 16.97829 * 7 2 1 10 10 C 1.41166 * 120.99990 * 203.58531 * 9 7 2 11 11 C 1.37590 * 119.01720 * 179.97438 * 10 9 7 12 12 N 1.32083 * 121.10715 * 359.97438 * 11 10 9 13 13 C 1.32463 * 122.23070 * 359.97438 * 12 11 10 14 14 N 1.39474 * 119.58052 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99813 * 5.24206 * 14 13 12 16 16 O 1.21282 * 119.99994 * 355.14412 * 15 14 13 17 17 C 1.50697 * 120.00297 * 175.15277 * 15 14 13 18 18 C 1.52998 * 109.47139 * 179.97438 * 17 15 14 19 19 C 1.53005 * 117.49557 * 243.74267 * 18 17 15 20 20 C 1.53005 * 117.49686 * 175.08656 * 18 17 15 21 21 C 1.38596 * 120.84570 * 0.26361 * 13 12 11 22 22 H 0.96988 * 120.00277 * 0.02562 * 1 2 3 23 23 H 1.08005 * 120.49317 * 359.97438 * 10 9 7 24 24 H 1.07997 * 119.44322 * 180.02562 * 11 10 9 25 25 H 0.96993 * 120.00349 * 185.23997 * 14 13 12 26 26 H 1.08996 * 109.47518 * 59.99491 * 17 15 14 27 27 H 1.09005 * 109.46930 * 299.99629 * 17 15 14 28 28 H 1.09003 * 115.55288 * 29.41221 * 18 17 15 29 29 H 1.08999 * 117.49690 * 359.97438 * 19 18 17 30 30 H 1.09004 * 117.49847 * 145.02384 * 19 18 17 31 31 H 1.08999 * 117.49465 * 214.97735 * 20 18 17 32 32 H 1.08993 * 117.50064 * 359.97438 * 20 18 17 33 33 H 1.07992 * 120.60688 * 179.71978 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 3.7014 1.3466 -0.0006 5 1 1.8826 2.3966 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0077 -1.2126 -0.0005 8 1 3.0524 -1.2331 0.2726 9 6 1.3464 -2.4116 -0.3590 10 6 1.8238 -3.6649 0.0815 11 6 1.1489 -4.8047 -0.2909 12 7 0.0688 -4.7413 -1.0485 13 6 -0.4201 -3.5910 -1.4870 14 7 -1.5642 -3.5884 -2.2847 15 6 -2.2257 -4.7394 -2.5178 16 8 -1.7784 -5.7896 -2.1080 17 6 -3.5210 -4.7214 -3.2878 18 6 -4.0606 -6.1477 -3.4114 19 6 -4.1661 -6.7438 -4.8166 20 6 -5.4327 -6.3299 -4.0634 21 6 0.1941 -2.3901 -1.1681 22 1 -0.4850 0.8399 -0.0004 23 1 2.7058 -3.7283 0.7017 24 1 1.5079 -5.7671 0.0426 25 1 -1.8838 -2.7585 -2.6717 26 1 -3.3467 -4.3118 -4.2827 27 1 -4.2476 -4.1020 -2.7620 28 1 -3.7967 -6.8225 -2.5970 29 1 -3.8514 -6.1195 -5.6530 30 1 -3.9720 -7.8107 -4.9267 31 1 -6.0714 -7.1247 -3.6781 32 1 -5.9512 -5.4336 -4.4038 33 1 -0.2052 -1.4548 -1.5314 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531926071.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:29 Heat of formation + Delta-G solvation = -0.175292 kcal Electronic energy + Delta-G solvation = -16878.427508 eV Core-core repulsion = 14096.906944 eV Total energy + Delta-G solvation = -2781.520564 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.24873 -39.69285 -37.89746 -36.10766 -35.45208 -32.50323 -31.31734 -29.47019 -27.91793 -23.95723 -23.69772 -23.18734 -21.83349 -20.87863 -19.45223 -18.55708 -17.44522 -17.02873 -16.61372 -16.10833 -16.07940 -15.69811 -15.03990 -14.82366 -14.52283 -14.34136 -14.26134 -13.35702 -13.14993 -12.92666 -12.67017 -12.38817 -12.29109 -12.07448 -11.90796 -11.48798 -11.25900 -11.15307 -10.99248 -10.78173 -9.96274 -9.58758 -8.86935 -8.65484 -6.57502 0.74753 0.98549 1.41481 1.53599 1.57054 1.91831 2.17375 2.20600 2.79429 2.95973 3.65638 3.74463 3.78997 4.05664 4.16442 4.24456 4.55685 4.66270 4.75340 4.82089 4.82775 4.86410 4.93210 5.07098 5.08227 5.21627 5.30127 5.37427 5.47633 5.65776 5.89923 6.14861 6.48067 6.62681 6.78786 6.82185 7.35617 7.85011 8.25436 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036570 B = 0.004956 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.474479 B = 5647.857619 C = 6276.028967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.041 3.959 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.265 1.265 7 C -0.485 4.485 8 H 0.083 0.917 9 C 0.114 3.886 10 C -0.301 4.301 11 C 0.112 3.888 12 N -0.581 5.581 13 C 0.332 3.668 14 N -0.655 5.655 15 C 0.493 3.507 16 O -0.529 6.529 17 C -0.093 4.093 18 C -0.165 4.165 19 C -0.181 4.181 20 C -0.157 4.157 21 C -0.263 4.263 22 H 0.293 0.707 23 H 0.115 0.885 24 H 0.148 0.852 25 H 0.423 0.577 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.429 -0.569 -7.800 11.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.176 4.176 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.190 1.190 7 C -0.516 4.516 8 H 0.102 0.898 9 C 0.106 3.894 10 C -0.324 4.324 11 C -0.042 4.042 12 N -0.302 5.302 13 C 0.107 3.893 14 N -0.302 5.302 15 C 0.280 3.720 16 O -0.402 6.402 17 C -0.133 4.133 18 C -0.184 4.184 19 C -0.218 4.218 20 C -0.194 4.194 21 C -0.288 4.288 22 H 0.104 0.896 23 H 0.133 0.867 24 H 0.166 0.834 25 H 0.261 0.739 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.104 0.896 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.846 -2.005 -7.767 11.941 hybrid contribution 0.872 1.632 0.466 1.908 sum -7.974 -0.373 -7.301 10.818 Atomic orbital electron populations 1.69812 1.09094 1.31066 1.33640 1.26826 0.95548 1.04591 0.90683 0.85072 0.79351 0.75651 0.79129 1.18234 1.18473 1.18994 1.19903 0.98312 0.91749 1.41594 0.89849 1.18011 0.90681 0.93294 0.87453 1.22074 1.06071 0.93756 1.10545 1.22213 0.90604 0.97898 0.93440 1.67361 1.16280 1.27241 1.19273 1.18507 0.88285 0.90204 0.92351 1.43570 1.25109 1.12240 1.49308 1.21713 0.87063 0.82893 0.80288 1.90733 1.68173 1.31387 1.49937 1.21248 0.92157 0.97964 1.01922 1.21954 1.02138 0.96466 0.97818 1.23141 1.02535 1.01683 0.94400 1.23101 0.89707 1.04142 1.02447 1.21538 1.03186 0.95808 1.08310 0.89568 0.86684 0.83438 0.73875 0.86150 0.86239 0.89643 0.87628 0.89122 0.88112 0.86667 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.56 10.93 21.84 0.24 -39.32 16 2 C 0.04 1.95 5.20 85.29 0.44 2.39 16 3 Si 0.99 35.61 29.59 68.60 2.03 37.64 16 4 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 5 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 6 H -0.27 -9.18 7.11 99.48 0.71 -8.47 16 7 C -0.49 -25.28 9.12 23.52 0.21 -25.07 16 8 H 0.08 4.18 7.90 -2.91 -0.02 4.15 16 9 C 0.11 6.16 5.60 -21.11 -0.12 6.04 16 10 C -0.30 -15.26 9.90 22.84 0.23 -15.04 16 11 C 0.11 5.58 11.15 84.50 0.94 6.52 16 12 N -0.58 -30.83 7.85 -193.54 -1.52 -32.35 16 13 C 0.33 16.60 7.42 132.75 0.98 17.59 16 14 N -0.65 -25.65 5.39 -308.66 -1.66 -27.31 16 15 C 0.49 18.42 7.79 87.66 0.68 19.10 16 16 O -0.53 -25.05 13.82 -3.04 -0.04 -25.10 16 17 C -0.09 -2.22 5.98 29.85 0.18 -2.04 16 18 C -0.16 -4.05 5.41 -10.79 -0.06 -4.11 16 19 C -0.18 -3.60 10.18 30.62 0.31 -3.28 16 20 C -0.16 -2.68 10.25 30.62 0.31 -2.36 16 21 C -0.26 -13.69 8.62 22.99 0.20 -13.49 16 22 H 0.29 12.65 8.29 -92.72 -0.77 11.88 16 23 H 0.12 5.33 8.06 -2.91 -0.02 5.31 16 24 H 0.15 6.35 8.06 -2.91 -0.02 6.32 16 25 H 0.42 13.11 8.70 -92.71 -0.81 12.30 16 26 H 0.12 2.16 7.87 -2.39 -0.02 2.14 16 27 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 28 H 0.09 2.68 7.31 -2.39 -0.02 2.66 16 29 H 0.11 1.81 8.03 -2.39 -0.02 1.79 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.13 6.40 6.20 -2.91 -0.02 6.39 16 Total: -1.00 -69.05 288.51 3.69 -65.36 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: 0.32 Total: 34.83 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 4.32 Total: -13.75 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -2.94 Total: -98.98 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.04 Total: -25.10 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -69.05 3.69 -65.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531926071.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.185 kcal (2) G-P(sol) polarization free energy of solvation -69.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds