Wall clock time and date at job start Sun Mar 29 2020 22:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86801 * 120.00081 * 2 1 4 4 H 1.48491 * 109.47260 * 269.99937 * 3 2 1 5 5 H 1.48500 * 109.46841 * 30.00147 * 3 2 1 6 6 H 1.48507 * 109.47305 * 149.99792 * 3 2 1 7 7 C 1.40053 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.46370 * 119.99876 * 0.02562 * 7 2 1 10 10 O 1.21691 * 120.00331 * 359.97438 * 9 7 2 11 11 N 1.34782 * 120.00172 * 179.97438 * 9 7 2 12 12 C 1.47426 * 125.64421 * 359.94928 * 11 9 7 13 13 C 1.54910 * 104.83052 * 204.16910 * 12 11 9 14 14 C 1.55411 * 101.66679 * 323.07685 * 13 12 11 15 15 C 1.47019 * 125.65013 * 179.97438 * 11 9 7 16 16 H 1.09001 * 109.88393 * 59.32551 * 15 11 9 17 17 C 1.50704 * 109.87968 * 298.31793 * 15 11 9 18 18 C 1.38221 * 119.61842 * 6.71610 * 17 15 11 19 19 C 1.38631 * 119.16077 * 179.74593 * 18 17 15 20 20 C 1.38675 * 118.41792 * 0.25627 * 19 18 17 21 21 C 1.38184 * 119.16617 * 359.97438 * 20 19 18 22 22 N 1.31861 * 119.61576 * 187.00617 * 17 15 11 23 23 H 0.97002 * 120.00229 * 0.02562 * 1 2 3 24 24 H 1.08997 * 110.36917 * 323.00372 * 12 11 9 25 25 H 1.08997 * 110.36654 * 85.32983 * 12 11 9 26 26 H 1.08994 * 111.00591 * 81.06539 * 13 12 11 27 27 H 1.09004 * 111.00088 * 204.88505 * 13 12 11 28 28 H 1.09009 * 110.69312 * 277.05376 * 14 13 12 29 29 H 1.08994 * 110.85491 * 153.69917 * 14 13 12 30 30 H 1.08002 * 120.42313 * 0.02855 * 18 17 15 31 31 H 1.07997 * 120.79047 * 180.23231 * 19 18 17 32 32 H 1.08006 * 120.41367 * 180.02562 * 20 19 18 33 33 H 1.07993 * 119.61608 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4000 5 1 1.4381 2.6526 0.7001 6 1 3.5383 1.4402 0.7001 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4806 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 3.4161 -3.7928 -0.0005 13 6 3.6758 -5.1916 -0.6132 14 6 2.4938 -6.0147 -0.0297 15 6 1.3428 -4.9871 0.0011 16 1 0.7132 -5.1095 -0.8803 17 6 0.5195 -5.1765 1.2491 18 6 0.3211 -4.1095 2.1050 19 6 -0.4423 -4.2930 3.2476 20 6 -0.9754 -5.5499 3.4903 21 6 -0.7303 -6.5704 2.5914 22 7 0.0016 -6.3597 1.5147 23 1 -0.4850 0.8400 -0.0004 24 1 3.8735 -3.0182 -0.6161 25 1 3.8026 -3.7468 1.0176 26 1 3.6254 -5.1570 -1.7014 27 1 4.6337 -5.5919 -0.2810 28 1 2.7265 -6.3628 0.9768 29 1 2.2456 -6.8527 -0.6810 30 1 0.7514 -3.1439 1.8842 31 1 -0.6172 -3.4766 3.9326 32 1 -1.5753 -5.7288 4.3704 33 1 -1.1416 -7.5522 2.7735 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547795441.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:14 Heat of formation + Delta-G solvation = -13.504064 kcal Electronic energy + Delta-G solvation = -17963.492109 eV Core-core repulsion = 15181.393566 eV Total energy + Delta-G solvation = -2782.098543 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.52008 -39.73638 -37.61684 -34.67794 -33.51747 -32.65330 -32.02644 -29.24928 -28.16300 -24.86178 -24.32624 -23.25784 -21.99190 -20.69620 -18.72975 -17.83438 -17.71789 -17.20397 -16.44365 -16.32708 -15.89304 -15.32424 -15.01011 -14.61777 -14.07940 -14.02783 -13.94772 -13.58085 -13.12545 -13.02186 -12.78496 -12.64898 -12.47713 -12.09028 -12.01341 -11.86128 -11.59897 -10.94648 -10.76161 -10.36828 -9.89960 -9.69607 -9.17349 -8.30727 -6.86309 0.25177 0.40729 1.38280 1.39180 1.54259 2.20823 2.42983 2.73769 2.90054 3.37698 3.65579 3.78726 3.83145 4.01749 4.06685 4.22395 4.29541 4.34621 4.47922 4.65055 4.77699 4.93389 4.93599 5.01641 5.09046 5.11960 5.26247 5.31742 5.37312 5.43912 5.62463 5.87565 6.03940 6.38167 6.85566 7.06780 7.46958 8.45150 8.65062 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.008408 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.851285 B = 3329.223484 C = 4172.857787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.032 3.968 3 Si 0.993 3.007 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.249 1.249 7 C -0.565 4.565 8 H 0.086 0.914 9 C 0.558 3.442 10 O -0.617 6.617 11 N -0.646 5.646 12 C 0.107 3.893 13 C -0.119 4.119 14 C -0.095 4.095 15 C 0.184 3.816 16 H 0.048 0.952 17 C 0.109 3.891 18 C -0.161 4.161 19 C -0.097 4.097 20 C -0.170 4.170 21 C 0.083 3.917 22 N -0.497 5.497 23 H 0.274 0.726 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.137 0.863 32 H 0.171 0.829 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.077 -9.611 4.728 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.184 4.184 3 Si 0.813 3.187 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.172 1.172 7 C -0.601 4.601 8 H 0.104 0.896 9 C 0.366 3.634 10 O -0.504 6.504 11 N -0.383 5.383 12 C -0.016 4.016 13 C -0.157 4.157 14 C -0.134 4.134 15 C 0.078 3.922 16 H 0.066 0.934 17 C -0.028 4.028 18 C -0.181 4.181 19 C -0.123 4.123 20 C -0.190 4.190 21 C -0.075 4.075 22 N -0.207 5.207 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.131 0.869 28 H 0.091 0.909 29 H 0.116 0.884 30 H 0.129 0.871 31 H 0.155 0.845 32 H 0.189 0.811 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 5.377 -10.119 4.139 12.183 hybrid contribution -0.380 1.865 0.478 1.962 sum 4.998 -8.254 4.617 10.697 Atomic orbital electron populations 1.70186 1.09372 1.28840 1.36339 1.26917 0.95483 1.04687 0.91289 0.85081 0.78876 0.75348 0.79437 1.18651 1.19851 1.17210 1.21390 0.94611 0.89582 1.54553 0.89563 1.18228 0.86459 0.82844 0.75915 1.90611 1.15757 1.87054 1.56946 1.48692 1.07159 1.03724 1.78766 1.22196 0.80786 0.98530 1.00056 1.22865 0.99047 0.92897 1.00871 1.22492 0.92424 0.96131 1.02310 1.20095 0.94735 0.85446 0.91957 0.93375 1.21611 0.96124 0.88962 0.96142 1.22304 0.99916 1.00279 0.95618 1.21858 0.95334 0.98837 0.96292 1.22432 1.01405 0.92747 1.02374 1.23348 0.94153 1.00831 0.89159 1.67378 1.10098 1.22661 1.20567 0.91653 0.91188 0.92897 0.90286 0.86901 0.90881 0.88440 0.87118 0.84494 0.81117 0.78958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.78 11.83 21.84 0.26 -49.53 16 2 C 0.03 1.75 5.50 85.31 0.47 2.22 16 3 Si 0.99 40.81 29.56 68.60 2.03 42.83 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.56 -31.89 8.98 24.83 0.22 -31.67 16 8 H 0.09 4.41 6.64 -2.91 -0.02 4.39 16 9 C 0.56 32.45 5.57 86.36 0.48 32.93 16 10 O -0.62 -41.10 13.33 -4.32 -0.06 -41.16 16 11 N -0.65 -30.31 2.66 -797.22 -2.12 -32.43 16 12 C 0.11 3.85 6.52 86.85 0.57 4.42 16 13 C -0.12 -3.13 7.09 32.08 0.23 -2.91 16 14 C -0.10 -2.87 6.31 31.87 0.20 -2.67 16 15 C 0.18 7.75 3.33 44.60 0.15 7.90 16 16 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 17 C 0.11 4.73 5.87 42.55 0.25 4.98 16 18 C -0.16 -7.52 8.06 22.36 0.18 -7.34 16 19 C -0.10 -3.67 10.18 22.47 0.23 -3.44 16 20 C -0.17 -4.98 10.11 22.36 0.23 -4.75 16 21 C 0.08 2.47 11.18 84.67 0.95 3.42 16 22 N -0.50 -18.61 10.05 -183.89 -1.85 -20.46 16 23 H 0.27 15.15 8.29 -92.71 -0.77 14.38 16 24 H 0.07 2.52 7.14 -2.39 -0.02 2.50 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.07 2.15 7.84 -2.38 -0.02 2.13 16 29 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.11 6.15 4.63 -2.91 -0.01 6.13 16 31 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 32 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.19 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -77.70 276.89 3.52 -74.17 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 1.12 Total: 23.48 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 4.15 Total: 3.09 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -3.71 Total: -102.42 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -0.06 Total: -41.16 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Total: -77.70 3.52 -74.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547795441.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.669 kcal (2) G-P(sol) polarization free energy of solvation -77.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds