Wall clock time and date at job start Sun Mar 29 2020 22:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86796 * 120.00090 * 2 1 4 4 H 1.48505 * 109.46778 * 269.99999 * 3 2 1 5 5 H 1.48501 * 109.47222 * 29.99657 * 3 2 1 6 6 H 1.48498 * 109.47328 * 149.99996 * 3 2 1 7 7 C 1.40051 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00446 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00007 * 0.02562 * 7 2 1 10 10 O 1.21690 * 119.99910 * 359.97438 * 9 7 2 11 11 N 1.34780 * 120.00430 * 179.97438 * 9 7 2 12 12 C 1.47023 * 125.64409 * 359.97438 * 11 9 7 13 13 C 1.54322 * 107.27149 * 178.95789 * 12 11 9 14 14 C 1.55282 * 103.00430 * 337.88615 * 13 12 11 15 15 H 1.09001 * 110.95548 * 277.33125 * 14 13 12 16 16 C 1.50701 * 111.09716 * 153.44772 * 14 13 12 17 17 C 1.38646 * 120.79280 * 306.07837 * 16 14 13 18 18 C 1.38204 * 119.16053 * 179.75804 * 17 16 14 19 19 N 1.31861 * 120.76575 * 0.52893 * 18 17 16 20 20 C 1.31869 * 121.72992 * 359.74403 * 19 18 17 21 21 C 1.38204 * 120.75950 * 359.97320 * 20 19 18 22 22 C 1.47419 * 125.65006 * 179.97438 * 11 9 7 23 23 H 0.96997 * 120.00186 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.87859 * 298.37607 * 12 11 9 25 25 H 1.09003 * 109.88678 * 59.38281 * 12 11 9 26 26 H 1.09006 * 110.71959 * 96.16400 * 13 12 11 27 27 H 1.08997 * 110.71908 * 219.26179 * 13 12 11 28 28 H 1.08004 * 120.41354 * 359.97438 * 17 16 14 29 29 H 1.08006 * 119.61389 * 180.28926 * 18 17 16 30 30 H 1.07997 * 119.62072 * 180.02562 * 20 19 18 31 31 H 1.08002 * 120.42066 * 180.02562 * 21 20 19 32 32 H 1.09002 * 110.36926 * 322.95057 * 22 11 9 33 33 H 1.08995 * 110.36556 * 85.16341 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0463 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6478 0.0005 12 6 3.4121 -3.7925 0.0000 13 6 3.7230 -5.3038 0.0270 14 6 2.4217 -5.9179 0.6108 15 1 2.4173 -5.8597 1.6992 16 6 2.2377 -7.3400 0.1473 17 6 2.2564 -7.6546 -1.2029 18 6 2.0892 -8.9707 -1.5901 19 7 1.9033 -9.9192 -0.6932 20 6 1.8741 -9.6561 0.5987 21 6 2.0398 -8.3642 1.0608 22 6 1.3411 -4.9908 0.0011 23 1 -0.4850 0.8400 0.0004 24 1 3.8285 -3.3443 -0.9022 25 1 3.8328 -3.3093 0.8819 26 1 3.9058 -5.6780 -0.9804 27 1 4.5753 -5.5106 0.6743 28 1 2.4033 -6.8813 -1.9424 29 1 2.1073 -9.2246 -2.6397 30 1 1.7199 -10.4595 1.3037 31 1 2.0154 -8.1550 2.1201 32 1 0.4419 -5.0000 0.6171 33 1 1.1058 -5.3011 -1.0169 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566453586.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:19 Heat of formation + Delta-G solvation = -4.548798 kcal Electronic energy + Delta-G solvation = -17123.824255 eV Core-core repulsion = 14342.114041 eV Total energy + Delta-G solvation = -2781.710214 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.34032 -38.38301 -35.94452 -33.11547 -32.50396 -31.23259 -29.73276 -28.43578 -26.23604 -23.82916 -23.33131 -22.11673 -20.26050 -19.17052 -17.02916 -16.83458 -16.07235 -15.57439 -15.47719 -14.87817 -14.27066 -13.91731 -13.72620 -13.50519 -13.06333 -12.87691 -12.53097 -11.98924 -11.71809 -11.50488 -11.29291 -11.13792 -10.98211 -10.89484 -10.41834 -10.37049 -10.21792 -9.49687 -9.38629 -9.16972 -8.89376 -7.69682 -7.25565 -6.24127 -4.69173 1.11732 1.23598 3.11258 3.18088 3.21502 3.78153 4.03867 4.37857 4.42903 4.50584 4.71611 4.76900 5.00800 5.08402 5.14025 5.18583 5.29895 5.63172 5.66717 5.72711 5.74567 5.79496 5.97529 6.05332 6.24791 6.35072 6.40031 6.57160 6.58534 6.68466 7.31625 7.39747 7.93712 8.05165 8.36049 8.97536 9.43338 10.52758 10.71526 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.053523 B = 0.004701 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.012971 B = 5954.952208 C = 6141.416596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.086 3.914 3 Si 0.909 3.091 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.570 3.430 10 O -0.576 6.576 11 N -0.646 5.646 12 C 0.120 3.880 13 C -0.122 4.122 14 C -0.072 4.072 15 H 0.092 0.908 16 C -0.016 4.016 17 C -0.166 4.166 18 C 0.097 3.903 19 N -0.495 5.495 20 C 0.096 3.904 21 C -0.171 4.171 22 C 0.127 3.873 23 H 0.269 0.731 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.136 0.864 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.134 0.866 32 H 0.066 0.934 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.903 -12.902 0.466 15.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.377 3.623 10 O -0.458 6.458 11 N -0.386 5.386 12 C -0.004 4.004 13 C -0.160 4.160 14 C -0.091 4.091 15 H 0.110 0.890 16 C -0.025 4.025 17 C -0.186 4.186 18 C -0.059 4.059 19 N -0.204 5.204 20 C -0.061 4.061 21 C -0.191 4.191 22 C 0.003 3.997 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.154 0.846 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.152 0.848 32 H 0.084 0.916 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.877 -13.546 0.183 15.193 hybrid contribution 0.642 1.658 0.297 1.803 sum 7.519 -11.888 0.480 14.075 Atomic orbital electron populations 1.70019 1.07099 1.27412 1.35083 1.25740 0.94641 1.00361 0.92596 0.86350 0.80148 0.81266 0.78894 1.19675 1.20390 1.18849 1.20889 0.93608 0.88917 1.54064 0.91212 1.18067 0.86684 0.81202 0.76359 1.90617 1.13889 1.85854 1.55454 1.48742 1.04676 1.04537 1.80668 1.21598 0.84211 0.93626 1.00983 1.22784 0.96283 0.95838 1.01112 1.21470 0.97237 0.89450 1.00931 0.88988 1.20194 0.93633 0.95272 0.93360 1.22084 1.01840 0.98164 0.96478 1.22720 0.95134 0.88810 0.99281 1.67642 1.12948 1.37139 1.02676 1.22699 0.95583 0.95548 0.92284 1.22088 1.02352 0.93738 1.00890 1.21794 0.95198 0.83762 0.98956 0.92004 0.92642 0.92609 0.90984 0.90706 0.84591 0.82904 0.82988 0.84843 0.91570 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.98 11.83 55.55 0.66 -22.32 16 2 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 3 Si 0.91 19.95 29.56 -169.99 -5.02 14.93 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.54 -15.15 9.06 -35.63 -0.32 -15.47 16 8 H 0.07 1.80 7.16 -52.49 -0.38 1.42 16 9 C 0.57 16.41 7.78 -12.99 -0.10 16.31 16 10 O -0.58 -18.92 15.28 5.20 0.08 -18.84 16 11 N -0.65 -14.70 3.33 -172.19 -0.57 -15.27 16 12 C 0.12 2.14 6.05 -3.06 -0.02 2.12 16 13 C -0.12 -1.64 6.37 -24.83 -0.16 -1.80 16 14 C -0.07 -1.02 3.29 -89.56 -0.29 -1.32 16 15 H 0.09 1.27 8.03 -51.93 -0.42 0.85 16 16 C -0.02 -0.21 5.02 -104.32 -0.52 -0.73 16 17 C -0.17 -2.02 8.40 -39.44 -0.33 -2.36 16 18 C 0.10 1.14 11.18 -17.55 -0.20 0.94 16 19 N -0.49 -6.34 10.36 -13.25 -0.14 -6.47 16 20 C 0.10 1.08 11.18 -17.55 -0.20 0.88 16 21 C -0.17 -1.94 9.79 -39.44 -0.39 -2.33 16 22 C 0.13 2.43 6.33 -2.54 -0.02 2.41 16 23 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 24 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.89 6.87 -51.93 -0.36 0.53 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.14 1.57 7.17 -52.48 -0.38 1.19 16 29 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.13 1.25 8.04 -52.49 -0.42 0.83 16 32 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 33 H 0.05 0.90 7.12 -51.93 -0.37 0.53 16 LS Contribution 282.88 15.07 4.26 4.26 Total: -1.00 -34.94 282.88 -7.36 -42.30 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -3.98 Total: 0.44 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -2.64 Total: 0.97 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.05 Total: -44.06 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.08 Total: -18.84 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.94 -7.36 -42.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566453586.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.751 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds