Wall clock time and date at job start Sun Mar 29 2020 22:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48495 * 109.47322 * 240.00183 * 3 2 1 5 5 H 1.48501 * 109.46945 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46898 * 120.00332 * 3 2 1 7 7 C 1.37877 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99650 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00687 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47261 * 179.97438 * 9 7 2 11 11 N 1.46908 * 109.46766 * 179.97438 * 10 9 7 12 12 C 1.46895 * 110.99743 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46989 * 179.97438 * 12 11 10 14 14 C 1.34038 * 124.91000 * 89.99697 * 13 12 11 15 15 C 1.46630 * 106.17438 * 179.70328 * 14 13 12 16 16 C 1.39149 * 135.25786 * 180.23718 * 15 14 13 17 17 N 1.31762 * 120.09242 * 179.97438 * 16 15 14 18 18 C 1.32254 * 122.11516 * 0.04687 * 17 16 15 19 19 C 1.37797 * 121.51631 * 359.97218 * 18 17 16 20 20 C 1.39154 * 118.92104 * 0.02562 * 19 18 17 21 21 O 1.34375 * 134.63506 * 179.97438 * 20 19 18 22 22 H 0.96996 * 120.00543 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47227 * 59.99456 * 9 7 2 24 24 H 1.09004 * 109.46867 * 299.99828 * 9 7 2 25 25 H 1.08998 * 109.46899 * 60.00173 * 10 9 7 26 26 H 1.08995 * 109.47471 * 299.99334 * 10 9 7 27 27 H 1.00900 * 110.99507 * 303.95125 * 11 10 9 28 28 H 1.08998 * 109.47536 * 59.99553 * 12 11 10 29 29 H 1.09002 * 109.46886 * 299.99717 * 12 11 10 30 30 H 1.08002 * 126.91638 * 359.97047 * 14 13 12 31 31 H 1.07994 * 119.95266 * 0.02562 * 16 15 14 32 32 H 1.08001 * 119.23970 * 179.97438 * 18 17 16 33 33 H 1.08002 * 120.53631 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 7 1.5109 -4.9343 -0.0033 12 6 2.4354 -6.0759 -0.0036 13 6 1.6473 -7.3604 -0.0035 14 6 1.2458 -8.0141 -1.1027 15 6 0.5261 -9.2016 -0.6316 16 6 -0.1216 -10.2715 -1.2416 17 7 -0.6882 -11.2068 -0.5067 18 6 -0.6678 -11.1709 0.8152 19 6 -0.0484 -10.1470 1.4985 20 6 0.5672 -9.1306 0.7745 21 8 1.2418 -8.0149 1.0999 22 1 -0.4851 0.8400 0.0004 23 1 0.6248 -2.5564 -0.8919 24 1 0.6241 -2.5576 0.8881 25 1 2.8720 -3.6050 0.8873 26 1 2.8720 -3.6036 -0.8927 27 1 0.8748 -4.9848 0.7783 28 1 3.0634 -6.0352 0.8863 29 1 3.0633 -6.0345 -0.8936 30 1 1.4212 -7.7266 -2.1288 31 1 -0.1592 -10.3356 -2.3190 32 1 -1.1476 -11.9623 1.3719 33 1 -0.0410 -10.1337 2.5784 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593615509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:47 Heat of formation + Delta-G solvation = 10.868934 kcal Electronic energy + Delta-G solvation = -16288.231739 eV Core-core repulsion = 13507.190088 eV Total energy + Delta-G solvation = -2781.041651 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.71618 -40.01164 -37.69692 -35.20534 -34.02597 -32.78580 -32.16094 -30.28308 -27.36442 -25.43820 -24.62233 -23.26245 -22.56545 -22.21851 -18.93355 -18.54044 -17.93549 -17.46906 -17.05781 -16.67147 -16.42392 -15.59053 -15.46418 -15.31967 -14.67166 -14.43908 -14.24473 -14.12068 -13.78481 -13.46270 -13.00085 -12.81136 -12.52842 -12.42673 -11.94469 -11.49581 -11.38215 -11.23760 -10.75272 -10.56304 -10.44722 -9.49319 -9.27348 -8.20372 -6.32229 -0.31621 0.18954 1.18403 1.41502 1.44537 1.48782 1.52500 2.40940 2.73576 3.13431 3.16258 3.40067 3.44808 3.58167 3.91256 4.02233 4.12311 4.28461 4.41660 4.51845 4.58381 4.58820 4.72062 4.81182 4.97586 5.04950 5.26578 5.42828 5.46413 5.64070 5.74636 5.95618 6.03641 6.17926 6.34637 6.85371 6.89649 7.37419 8.91674 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.058133 B = 0.003318 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.536764 B = 8436.173475 C = 8491.247638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.029 3.971 10 C 0.084 3.916 11 N -0.694 5.694 12 C 0.137 3.863 13 C 0.025 3.975 14 C -0.168 4.168 15 C -0.203 4.203 16 C 0.157 3.843 17 N -0.511 5.511 18 C 0.108 3.892 19 C -0.162 4.162 20 C 0.062 3.938 21 O -0.205 6.205 22 H 0.264 0.736 23 H -0.005 1.005 24 H -0.012 1.012 25 H 0.027 0.973 26 H 0.073 0.927 27 H 0.338 0.662 28 H 0.056 0.944 29 H 0.126 0.874 30 H 0.184 0.816 31 H 0.186 0.814 32 H 0.201 0.799 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 -20.829 0.609 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.008 4.008 10 C -0.044 4.044 11 N -0.325 5.325 12 C 0.008 3.992 13 C -0.022 4.022 14 C -0.189 4.189 15 C -0.206 4.206 16 C -0.005 4.005 17 N -0.222 5.222 18 C -0.042 4.042 19 C -0.182 4.182 20 C 0.007 3.993 21 O -0.105 6.105 22 H 0.072 0.928 23 H 0.014 0.986 24 H 0.007 0.993 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.155 0.845 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.201 0.799 31 H 0.203 0.797 32 H 0.218 0.782 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.461 -21.332 -0.141 21.474 hybrid contribution 0.736 1.812 1.340 2.371 sum 3.197 -19.520 1.198 19.816 Atomic orbital electron populations 1.70106 1.07927 1.27897 1.51408 1.26002 0.95744 1.03498 0.94641 0.85462 0.78200 0.77873 0.79272 1.18957 1.21047 1.19110 1.21599 0.93717 0.92061 1.50941 0.91674 1.18933 0.94402 0.92389 0.95082 1.21849 0.95630 0.87134 0.99824 1.60622 1.19992 1.01622 1.50297 1.20583 0.92034 0.82384 1.04168 1.22592 1.00504 0.95686 0.83449 1.22502 1.01890 0.93992 1.00562 1.21246 1.05482 0.99753 0.94116 1.22728 0.89735 0.86532 1.01509 1.67851 1.19065 1.27000 1.08273 1.23131 0.94700 0.96658 0.89711 1.21378 1.01288 0.92756 1.02781 1.20293 0.95940 0.88399 0.94647 1.83882 1.59703 1.31570 1.35386 0.92764 0.98628 0.99326 0.95464 0.90906 0.84487 0.92560 0.85649 0.79871 0.79678 0.78191 0.81710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 8 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.03 1.54 5.23 29.85 0.16 1.70 16 10 C 0.08 3.32 5.62 86.30 0.49 3.80 16 11 N -0.69 -23.64 6.49 -517.93 -3.36 -27.00 16 12 C 0.14 3.54 6.18 85.56 0.53 4.07 16 13 C 0.02 0.65 6.74 24.73 0.17 0.82 16 14 C -0.17 -4.07 11.00 23.50 0.26 -3.81 16 15 C -0.20 -4.98 6.44 -20.23 -0.13 -5.11 16 16 C 0.16 3.32 11.26 84.92 0.96 4.28 16 17 N -0.51 -10.96 10.35 -195.23 -2.02 -12.98 16 18 C 0.11 1.89 11.14 84.52 0.94 2.83 16 19 C -0.16 -3.16 10.13 22.39 0.23 -2.93 16 20 C 0.06 1.60 7.49 23.13 0.17 1.77 16 21 O -0.20 -5.83 10.57 -5.58 -0.06 -5.89 16 22 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 23 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 24 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 25 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.34 11.90 8.72 -89.69 -0.78 11.11 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.18 3.55 8.06 -2.91 -0.02 3.52 16 31 H 0.19 2.79 8.06 -2.91 -0.02 2.76 16 32 H 0.20 1.89 8.06 -2.91 -0.02 1.86 16 33 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -68.26 293.23 1.66 -66.60 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.33 Total: 12.72 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: 4.46 Total: -22.48 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -5.10 Total: -96.70 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.06 Total: -5.89 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -68.26 1.66 -66.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593615509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.468 kcal (2) G-P(sol) polarization free energy of solvation -68.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds