Wall clock time and date at job start Sun Mar 29 2020 23:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 119.99916 * 2 1 4 4 H 1.07997 * 120.00049 * 203.05019 * 3 2 1 5 5 C 1.38813 * 119.99944 * 23.04355 * 3 2 1 6 6 N 1.31622 * 119.99792 * 12.94330 * 5 3 2 7 7 Si 1.86796 * 119.99871 * 192.93549 * 5 3 2 8 8 H 1.48499 * 109.47518 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47028 * 120.00640 * 7 5 3 10 10 H 1.48505 * 109.47050 * 240.00219 * 7 5 3 11 11 C 1.46500 * 120.00131 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47555 * 89.99729 * 11 2 1 13 13 C 1.50696 * 109.47420 * 180.02562 * 12 11 2 14 14 N 1.29743 * 126.29033 * 270.00317 * 13 12 11 15 15 O 1.41362 * 109.74054 * 179.97438 * 14 13 12 16 16 C 1.34821 * 109.32881 * 359.97438 * 15 14 13 17 17 C 1.38979 * 133.44959 * 180.02562 * 16 15 14 18 18 C 1.37794 * 119.79673 * 180.02562 * 17 16 15 19 19 C 1.38791 * 120.60121 * 359.97438 * 18 17 16 20 20 C 1.36621 * 120.51267 * 359.97438 * 19 18 17 21 21 C 1.39683 * 119.79289 * 0.02562 * 20 19 18 22 22 H 1.08998 * 109.47178 * 275.12092 * 1 2 3 23 23 H 1.08997 * 109.47404 * 35.12421 * 1 2 3 24 24 H 1.09001 * 109.47187 * 155.12322 * 1 2 3 25 25 H 0.96997 * 119.99644 * 179.97438 * 6 5 3 26 26 H 1.09002 * 109.46992 * 329.99765 * 11 2 1 27 27 H 1.09004 * 109.47291 * 209.99954 * 11 2 1 28 28 H 1.09002 * 109.46941 * 60.00005 * 12 11 2 29 29 H 1.09004 * 109.47005 * 300.00400 * 12 11 2 30 30 H 1.07996 * 120.10159 * 359.97438 * 17 16 15 31 31 H 1.08003 * 119.70496 * 179.97438 * 18 17 16 32 32 H 1.07997 * 119.74414 * 179.72711 * 19 18 17 33 33 H 1.07995 * 120.10562 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2233 -0.3662 5 6 1.5386 2.3401 0.4706 6 7 0.4118 2.2596 1.1460 7 14 2.3157 4.0073 0.1454 8 1 3.5692 3.8265 -0.6301 9 1 1.3714 4.8507 -0.6306 10 1 2.6240 4.6703 1.4379 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 6 3.2055 -3.0152 -1.4437 14 7 4.4950 -3.1579 -1.4436 15 8 4.8233 -4.5329 -1.4437 16 6 3.6895 -5.2623 -1.4432 17 6 3.4316 -6.6280 -1.4427 18 6 2.1295 -7.0789 -1.4429 19 6 1.0710 -6.1813 -1.4432 20 6 1.3031 -4.8350 -1.4427 21 6 2.6156 -4.3570 -1.4425 22 1 -0.3633 0.0917 1.0235 23 1 -0.3634 0.8405 -0.5912 24 1 -0.3633 -0.9323 -0.4323 25 1 -0.0149 3.0661 1.4751 26 1 1.6084 -2.0286 0.5130 27 1 3.1500 -1.1386 0.5133 28 1 3.0416 -0.9500 -1.9567 29 1 1.5001 -1.8399 -1.9571 30 1 4.2492 -7.3336 -1.4429 31 1 1.9308 -8.1405 -1.4428 32 1 0.0559 -6.5500 -1.4478 33 1 0.4745 -4.1424 -1.4433 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593955936.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:10 Heat of formation + Delta-G solvation = 82.228756 kcal Electronic energy + Delta-G solvation = -17005.657691 eV Core-core repulsion = 14227.710435 eV Total energy + Delta-G solvation = -2777.947257 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.65396 -37.74108 -36.22492 -34.26258 -31.63414 -30.61461 -30.05655 -29.03898 -25.92497 -24.27695 -23.21283 -22.67644 -20.87469 -19.82502 -17.49411 -17.02702 -16.71733 -15.83446 -15.55513 -14.97134 -14.34457 -14.04047 -13.69450 -13.55719 -13.15896 -12.58181 -12.39564 -12.34875 -12.18641 -11.63643 -11.27624 -11.20589 -10.95856 -10.86248 -10.60110 -10.46702 -10.26532 -9.90943 -9.87635 -8.98866 -8.67663 -8.57224 -6.81763 -5.76698 -3.24308 0.62466 1.20861 2.16714 2.66696 3.36864 3.44511 3.47041 3.53295 4.17819 4.36476 4.49431 4.55911 4.78380 5.04125 5.22725 5.31280 5.39008 5.51703 5.62478 5.82804 5.87191 5.94980 6.03240 6.13484 6.23707 6.26994 6.53034 6.60088 6.65689 6.79580 7.31484 7.41106 7.68304 7.79003 8.34820 9.19051 9.80861 10.28881 11.28151 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.040826 B = 0.004918 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.669686 B = 5692.267245 C = 6249.802022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.161 3.839 12 C -0.079 4.079 13 C 0.151 3.849 14 N -0.292 5.292 15 O -0.105 6.105 16 C 0.082 3.918 17 C -0.132 4.132 18 C -0.065 4.065 19 C -0.156 4.156 20 C -0.033 4.033 21 C -0.191 4.191 22 H 0.033 0.967 23 H 0.042 0.958 24 H -0.001 1.001 25 H 0.253 0.747 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.085 -17.087 -5.601 17.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.319 5.319 3 C -0.390 4.390 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.031 3.969 12 C -0.120 4.120 13 C -0.030 4.030 14 N -0.038 5.038 15 O -0.112 6.112 16 C 0.027 3.973 17 C -0.152 4.152 18 C -0.085 4.085 19 C -0.175 4.175 20 C -0.053 4.053 21 C -0.194 4.194 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.017 0.983 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.240 -16.409 -5.514 17.355 hybrid contribution -0.316 0.591 -0.158 0.689 sum 0.924 -15.818 -5.672 16.830 Atomic orbital electron populations 1.20843 0.82373 0.95499 0.99732 1.43919 1.01962 1.00451 1.85559 1.19267 0.98413 0.85438 1.35870 0.91143 1.25031 0.97796 0.98630 0.97940 1.70081 1.19421 1.27225 1.38351 0.86176 0.78651 0.84108 0.77585 1.20188 1.21543 1.21640 1.20599 0.96929 0.88849 0.90503 1.21335 0.98468 0.87980 1.04250 1.25015 0.91322 0.96138 0.90554 1.79974 1.14478 0.88050 1.21313 1.89142 1.26372 1.14362 1.81368 1.20362 0.86694 0.93937 0.96268 1.20006 0.97910 0.90288 1.06985 1.21100 0.91280 1.00179 0.95904 1.20787 0.99657 0.92672 1.04339 1.20553 0.94675 0.95960 0.94066 1.20864 0.95634 0.90928 1.11987 0.94836 0.93904 0.98257 0.93718 0.94042 0.92857 0.89087 0.89548 0.84699 0.84597 0.84957 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.80 8.98 59.85 0.54 4.34 16 2 N -0.60 -14.74 2.92 -181.12 -0.53 -15.27 16 3 C -0.26 -7.11 9.65 -15.06 -0.15 -7.25 16 4 H 0.07 1.90 7.86 -52.49 -0.41 1.49 16 5 C 0.00 0.13 5.10 -17.43 -0.09 0.04 16 6 N -0.91 -26.18 10.71 55.49 0.59 -25.59 16 7 Si 0.90 21.78 29.57 -169.99 -5.03 16.76 16 8 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 11 C 0.16 3.29 5.63 -4.04 -0.02 3.27 16 12 C -0.08 -1.37 6.14 -27.89 -0.17 -1.55 16 13 C 0.15 2.56 6.72 -80.12 -0.54 2.02 16 14 N -0.29 -5.40 12.81 34.91 0.45 -4.95 16 15 O -0.11 -1.81 12.06 7.68 0.09 -1.72 16 16 C 0.08 1.20 7.48 -38.47 -0.29 0.92 16 17 C -0.13 -1.45 10.07 -39.47 -0.40 -1.85 16 18 C -0.07 -0.58 10.02 -39.54 -0.40 -0.98 16 19 C -0.16 -1.49 9.97 -39.96 -0.40 -1.89 16 20 C -0.03 -0.39 10.05 -39.63 -0.40 -0.79 16 21 C -0.19 -2.84 6.33 -105.16 -0.67 -3.50 16 22 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 23 H 0.04 1.09 7.34 -51.93 -0.38 0.71 16 24 H 0.00 -0.02 8.03 -51.93 -0.42 -0.44 16 25 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 27 H 0.05 1.15 8.04 -51.93 -0.42 0.73 16 28 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 29 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 289.05 15.07 4.36 4.36 Total: -1.00 -30.96 289.05 -7.14 -38.10 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -4.10 Total: -4.45 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -2.97 Total: -7.23 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.51 Total: -45.81 kcal Atomic # 8 Polarization: -1.81 SS G_CDS: 0.09 Total: -1.72 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.96 -7.14 -38.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593955936.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.330 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds