Wall clock time and date at job start Sun Mar 29 2020 22:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99633 * 2 1 4 4 H 1.48502 * 109.46560 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47303 * 300.00037 * 3 2 1 6 6 H 1.48499 * 109.46961 * 60.00452 * 3 2 1 7 7 C 1.37873 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99595 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00534 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47332 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47020 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46656 * 179.97438 * 12 11 10 14 14 N 1.29907 * 124.84981 * 89.69911 * 13 12 11 15 15 C 1.36065 * 108.79703 * 179.89457 * 14 13 12 16 16 C 1.39586 * 133.80665 * 180.09910 * 15 14 13 17 17 C 1.37677 * 119.73016 * 180.26341 * 16 15 14 18 18 C 1.38714 * 120.42207 * 0.03984 * 17 16 15 19 19 C 1.37903 * 120.48074 * 359.96146 * 18 17 16 20 20 C 1.38676 * 119.87288 * 0.02562 * 19 18 17 21 21 O 1.34231 * 124.85804 * 269.99872 * 13 12 11 22 22 H 0.97001 * 120.00114 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47766 * 59.99216 * 9 7 2 24 24 H 1.09008 * 109.46651 * 299.99865 * 9 7 2 25 25 H 1.09002 * 109.47142 * 59.99917 * 10 9 7 26 26 H 1.09000 * 109.46991 * 299.99661 * 10 9 7 27 27 H 1.00896 * 111.00309 * 56.04370 * 11 10 9 28 28 H 1.08990 * 109.47358 * 299.99539 * 12 11 10 29 29 H 1.09004 * 109.47457 * 60.00221 * 12 11 10 30 30 H 1.08005 * 120.13068 * 0.30924 * 16 15 14 31 31 H 1.07998 * 119.78751 * 180.02562 * 17 16 15 32 32 H 1.08002 * 119.76254 * 179.97438 * 18 17 16 33 33 H 1.07997 * 120.06954 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 7 1.5108 -4.9343 -0.0033 12 6 2.4353 -6.0759 -0.0049 13 6 1.6472 -7.3604 -0.0047 14 7 1.2531 -7.9897 -1.0707 15 6 0.5734 -9.1067 -0.6944 16 6 -0.0593 -10.1348 -1.3951 17 6 -0.6812 -11.1502 -0.7040 18 6 -0.6833 -11.1570 0.6832 19 6 -0.0623 -10.1479 1.3886 20 6 0.5692 -9.1174 0.7087 21 8 1.2472 -8.0150 1.0968 22 1 -0.4850 0.8400 0.0004 23 1 0.6247 -2.5564 -0.8918 24 1 0.6241 -2.5574 0.8881 25 1 2.8720 -3.6051 0.8873 26 1 2.8719 -3.6035 -0.8927 27 1 0.8741 -4.9839 -0.7844 28 1 3.0626 -6.0342 -0.8952 29 1 3.0640 -6.0356 0.8847 30 1 -0.0603 -10.1340 -2.4752 31 1 -1.1707 -11.9463 -1.2452 32 1 -1.1748 -11.9586 1.2146 33 1 -0.0676 -10.1601 2.4685 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602605297.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:53 Heat of formation + Delta-G solvation = 7.380772 kcal Electronic energy + Delta-G solvation = -16318.967811 eV Core-core repulsion = 13537.774902 eV Total energy + Delta-G solvation = -2781.192909 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.30130 -39.02787 -37.75124 -35.85184 -35.03389 -32.37386 -31.64558 -30.41251 -27.77525 -25.51431 -24.13278 -23.21702 -22.60402 -22.39846 -19.09771 -18.55618 -18.29769 -17.85613 -17.05949 -16.43920 -16.40709 -15.54068 -15.30259 -15.11956 -14.81634 -14.36888 -14.13657 -13.64899 -13.50041 -13.17302 -12.91996 -12.86432 -12.54586 -12.53639 -12.38123 -12.00353 -11.55979 -11.47324 -11.28677 -10.57430 -9.84150 -9.60530 -9.42906 -8.20178 -6.31807 -0.37525 0.20681 1.25550 1.42147 1.42386 1.46115 1.55878 2.41090 2.62203 2.68258 3.13914 3.34354 3.48181 3.85362 4.01365 4.16203 4.23801 4.33672 4.35086 4.47311 4.53909 4.58962 4.86869 5.04078 5.05079 5.16850 5.32182 5.36254 5.42257 5.62417 5.71162 5.73213 5.99253 6.13042 6.29974 6.51742 6.85941 7.37835 8.92465 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.058022 B = 0.003357 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.456305 B = 8338.088357 C = 8392.790780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.969 3.031 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.028 3.972 10 C 0.085 3.915 11 N -0.697 5.697 12 C 0.150 3.850 13 C 0.255 3.745 14 N -0.502 5.502 15 C -0.014 4.014 16 C -0.079 4.079 17 C -0.108 4.108 18 C -0.081 4.081 19 C -0.104 4.104 20 C -0.023 4.023 21 O -0.221 6.221 22 H 0.263 0.737 23 H -0.010 1.010 24 H -0.006 1.006 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.342 0.658 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.145 0.855 31 H 0.176 0.824 32 H 0.183 0.817 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.177 -23.864 0.475 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.009 4.009 10 C -0.042 4.042 11 N -0.329 5.329 12 C 0.020 3.980 13 C 0.043 3.957 14 N -0.233 5.233 15 C -0.125 4.125 16 C -0.098 4.098 17 C -0.127 4.127 18 C -0.098 4.098 19 C -0.122 4.122 20 C -0.073 4.073 21 O -0.112 6.112 22 H 0.072 0.928 23 H 0.008 0.992 24 H 0.012 0.988 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.159 0.841 28 H 0.111 0.889 29 H 0.139 0.861 30 H 0.163 0.837 31 H 0.194 0.806 32 H 0.200 0.800 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.083 -23.579 0.561 23.611 hybrid contribution 0.282 1.119 -0.271 1.185 sum 1.365 -22.461 0.290 22.504 Atomic orbital electron populations 1.70130 1.07960 1.27748 1.51590 1.26020 0.95759 1.03570 0.94681 0.85332 0.79163 0.78474 0.77650 1.18205 1.20525 1.20503 1.21639 0.93776 0.91893 1.50640 0.91500 1.18948 0.94430 0.92424 0.95111 1.21871 0.95672 0.86420 1.00274 1.60525 1.20000 1.01651 1.50757 1.20516 0.91645 0.80334 1.05472 1.26624 0.95247 0.95799 0.78015 1.70601 1.15859 1.07203 1.29670 1.20421 1.03309 0.96484 0.92316 1.20701 0.96394 0.91554 1.01131 1.21555 0.98309 0.98207 0.94660 1.21585 0.96584 0.97361 0.94314 1.20391 0.98777 0.91410 1.01664 1.21006 1.00631 0.90515 0.95151 1.84496 1.58219 1.31895 1.36577 0.92795 0.99188 0.98771 0.90742 0.94660 0.84092 0.88917 0.86111 0.83743 0.80637 0.80004 0.82891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -30.64 9.11 25.60 0.23 -30.41 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.03 1.52 5.23 29.85 0.16 1.67 16 10 C 0.09 3.48 5.62 86.30 0.49 3.96 16 11 N -0.70 -25.42 6.49 -517.91 -3.36 -28.78 16 12 C 0.15 4.35 6.31 85.56 0.54 4.89 16 13 C 0.25 8.21 7.75 88.40 0.68 8.90 16 14 N -0.50 -16.80 11.34 -296.26 -3.36 -20.16 16 15 C -0.01 -0.42 7.24 39.32 0.28 -0.13 16 16 C -0.08 -1.68 10.10 22.46 0.23 -1.46 16 17 C -0.11 -1.47 10.02 22.25 0.22 -1.25 16 18 C -0.08 -1.04 10.02 22.30 0.22 -0.81 16 19 C -0.10 -2.03 10.06 22.29 0.22 -1.81 16 20 C -0.02 -0.66 7.43 22.88 0.17 -0.49 16 21 O -0.22 -7.19 10.77 -9.93 -0.11 -7.30 16 22 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 23 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 24 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 25 H 0.07 2.88 8.14 -2.39 -0.02 2.87 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.34 12.87 8.72 -89.70 -0.78 12.09 16 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.12 3.03 8.14 -2.38 -0.02 3.01 16 30 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 33 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -72.36 292.95 -0.27 -72.63 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.33 Total: 11.31 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 3.91 Total: -16.64 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -6.44 Total: -106.27 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.11 Total: -7.30 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -72.36 -0.27 -72.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602605297.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.012 kcal (2) G-P(sol) polarization free energy of solvation -72.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds