Wall clock time and date at job start Sun Mar 29 2020 23:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 115.55407 * 2 1 4 4 C 1.53009 * 117.49605 * 214.32890 * 2 1 3 5 5 C 1.53001 * 59.99918 * 252.51019 * 4 2 1 6 6 H 1.09005 * 117.49221 * 107.48903 * 5 4 2 7 7 C 1.50696 * 117.50299 * 252.50928 * 5 4 2 8 8 O 1.21283 * 119.99774 * 68.60746 * 7 5 4 9 9 N 1.34775 * 120.00230 * 248.61548 * 7 5 4 10 10 C 1.39463 * 120.00000 * 174.97778 * 9 7 5 11 11 C 1.38601 * 119.57783 * 185.36435 * 10 9 7 12 12 C 1.40810 * 118.79520 * 179.97438 * 11 10 9 13 13 C 1.41540 * 120.99894 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00314 * 151.67680 * 13 12 11 15 15 C 1.40038 * 119.99796 * 331.67685 * 13 12 11 16 16 N 1.30739 * 119.99630 * 350.17814 * 15 13 12 17 17 Si 1.86795 * 119.99781 * 170.17286 * 15 13 12 18 18 H 1.48493 * 109.47578 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46836 * 120.00377 * 17 15 13 20 20 H 1.48507 * 109.47105 * 239.99822 * 17 15 13 21 21 C 1.41175 * 118.00891 * 359.97438 * 12 11 10 22 22 C 1.37595 * 119.01291 * 0.02562 * 21 12 11 23 23 N 1.32074 * 121.10944 * 359.72587 * 22 21 12 24 24 H 1.09000 * 109.47371 * 154.27635 * 1 2 3 25 25 H 1.08995 * 109.47292 * 274.28205 * 1 2 3 26 26 H 1.09010 * 109.46819 * 34.27890 * 1 2 3 27 27 H 1.08998 * 117.49581 * 0.02562 * 4 2 1 28 28 H 1.09001 * 117.49337 * 145.01820 * 4 2 1 29 29 H 0.97001 * 119.99988 * 354.97300 * 9 7 5 30 30 H 1.07997 * 120.60189 * 359.97438 * 11 10 9 31 31 H 0.97005 * 119.99936 * 179.97438 * 16 15 13 32 32 H 1.07998 * 120.49754 * 179.97438 * 21 12 11 33 33 H 1.07998 * 119.44113 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2364 -1.1208 -0.7654 5 6 2.2365 -1.1213 0.7646 6 1 1.6111 -1.8590 1.2676 7 6 3.5292 -0.7817 1.4606 8 8 3.9719 0.3459 1.4011 9 7 4.1936 -1.7310 2.1490 10 6 5.4404 -1.4455 2.7046 11 6 6.1658 -2.4573 3.3139 12 6 7.4231 -2.1508 3.8690 13 6 8.2033 -3.1480 4.5016 14 1 9.2801 -3.0649 4.5127 15 6 7.5791 -4.2423 5.1130 16 7 6.2812 -4.2507 5.2699 17 14 8.6009 -5.6900 5.7041 18 1 10.0344 -5.4366 5.4113 19 1 8.4177 -5.8602 7.1679 20 1 8.1627 -6.9240 5.0036 21 6 7.8826 -0.8192 3.7747 22 6 7.0910 0.1173 3.1506 23 7 5.9191 -0.2121 2.6382 24 1 -0.3634 -0.9258 -0.4460 25 1 -0.3633 0.0767 1.0247 26 1 -0.3633 0.8493 -0.5789 27 1 1.6111 -1.8579 -1.2692 28 1 3.1715 -0.8748 -1.2687 29 1 3.8044 -2.6128 2.2580 30 1 5.7739 -3.4625 3.3620 31 1 5.8487 -5.0089 5.6931 32 1 8.8408 -0.5396 4.1871 33 1 7.4359 1.1379 3.0743 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610791473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:52 Heat of formation + Delta-G solvation = 18.007001 kcal Electronic energy + Delta-G solvation = -16949.479191 eV Core-core repulsion = 14168.747070 eV Total energy + Delta-G solvation = -2780.732121 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.79931 -38.20361 -36.41501 -34.26381 -33.68151 -30.54844 -29.19747 -28.28364 -25.99363 -24.18384 -21.97172 -21.35788 -20.46140 -19.42173 -17.64227 -17.20323 -15.78612 -15.27604 -14.76857 -14.52280 -14.20862 -13.98017 -13.64147 -13.32459 -12.94821 -12.64469 -12.60355 -12.29310 -11.96552 -11.46447 -11.38467 -11.20848 -10.92559 -10.29503 -10.28175 -10.15366 -10.01125 -9.70634 -9.39367 -9.33719 -7.96557 -7.73415 -7.03665 -6.76146 -4.63036 2.50477 2.77664 3.01896 3.07363 3.13460 3.32336 3.58541 3.85877 3.99914 4.68101 4.76207 4.81922 4.93141 5.28813 5.30555 5.59981 5.66787 5.67508 5.70172 5.92186 6.00313 6.06129 6.32353 6.58494 6.65729 6.79435 6.95576 7.11453 7.37717 7.46545 7.79033 7.95403 8.22517 8.42825 8.70179 8.75353 8.91917 9.67709 10.10666 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.034593 B = 0.005178 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.225271 B = 5406.149857 C = 6021.877279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.125 4.125 3 H 0.117 0.883 4 C -0.151 4.151 5 C -0.188 4.188 6 H 0.120 0.880 7 C 0.526 3.474 8 O -0.483 6.483 9 N -0.655 5.655 10 C 0.335 3.665 11 C -0.237 4.237 12 C 0.143 3.857 13 C -0.457 4.457 14 H 0.082 0.918 15 C 0.076 3.924 16 N -0.797 5.797 17 Si 0.914 3.086 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.272 1.272 21 C -0.281 4.281 22 C 0.117 3.883 23 N -0.552 5.552 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.408 0.592 30 H 0.130 0.870 31 H 0.280 0.720 32 H 0.103 0.897 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.164 -0.635 -6.403 10.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.144 4.144 3 H 0.135 0.865 4 C -0.188 4.188 5 C -0.209 4.209 6 H 0.138 0.862 7 C 0.311 3.689 8 O -0.354 6.354 9 N -0.300 5.300 10 C 0.110 3.890 11 C -0.262 4.262 12 C 0.135 3.865 13 C -0.489 4.489 14 H 0.100 0.900 15 C -0.142 4.142 16 N -0.423 5.423 17 Si 0.738 3.262 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.197 1.197 21 C -0.305 4.305 22 C -0.038 4.038 23 N -0.271 5.271 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.243 0.757 30 H 0.147 0.853 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.589 0.714 -6.816 10.988 hybrid contribution 0.714 -1.962 1.008 2.318 sum -7.874 -1.247 -5.808 9.864 Atomic orbital electron populations 1.21388 0.92507 1.01915 1.02076 1.22352 0.94909 0.95276 1.01825 0.86515 1.23074 1.03026 1.01414 0.91297 1.22357 0.98184 1.04827 0.95555 0.86237 1.19696 0.84620 0.85307 0.79272 1.90762 1.66624 1.19787 1.58238 1.43380 1.18279 1.15413 1.52924 1.18232 0.85372 0.91053 0.94335 1.21610 0.98967 0.98578 1.07032 1.17592 0.90810 0.91175 0.86914 1.19603 0.94831 1.03792 1.30663 0.89998 1.25937 0.95139 0.99040 0.94089 1.69756 1.10146 1.29827 1.32607 0.86163 0.80960 0.80278 0.78750 1.18356 1.19888 1.19702 1.21952 1.02666 0.94494 1.11362 1.21780 0.89799 0.97872 0.94342 1.67220 1.15767 1.18130 1.26004 0.92509 0.92014 0.91881 0.88067 0.88344 0.75665 0.85269 0.90872 0.87904 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.19 37.16 0.38 -0.76 16 2 C -0.12 -1.56 5.92 -90.61 -0.54 -2.09 16 3 H 0.12 1.68 7.67 -51.93 -0.40 1.28 16 4 C -0.15 -1.78 9.88 -26.73 -0.26 -2.05 16 5 C -0.19 -2.60 5.91 -91.77 -0.54 -3.15 16 6 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 7 C 0.53 10.26 7.57 -10.99 -0.08 10.17 16 8 O -0.48 -11.41 14.51 5.55 0.08 -11.33 16 9 N -0.65 -13.24 5.39 -11.49 -0.06 -13.30 16 10 C 0.33 8.29 7.42 -154.71 -1.15 7.14 16 11 C -0.24 -6.07 8.59 -38.48 -0.33 -6.40 16 12 C 0.14 3.81 5.58 -106.55 -0.59 3.21 16 13 C -0.46 -11.83 9.13 -37.65 -0.34 -12.17 16 14 H 0.08 2.03 7.87 -52.48 -0.41 1.62 16 15 C 0.08 1.84 5.30 -17.34 -0.09 1.75 16 16 N -0.80 -19.78 10.83 55.55 0.60 -19.18 16 17 Si 0.91 18.03 29.57 -169.99 -5.03 13.00 16 18 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 C -0.28 -6.98 9.90 -38.70 -0.38 -7.36 16 22 C 0.12 2.85 11.15 -17.68 -0.20 2.65 16 23 N -0.55 -14.39 7.85 -12.52 -0.10 -14.49 16 24 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.10 0.93 8.05 -51.93 -0.42 0.52 16 28 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.41 6.82 8.70 -40.82 -0.36 6.46 16 30 H 0.13 3.29 6.27 -52.49 -0.33 2.96 16 31 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 32 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 33 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 LS Contribution 289.43 15.07 4.36 4.36 Total: -1.00 -31.20 289.43 -8.27 -39.47 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -3.99 Total: 10.52 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -4.14 Total: -9.06 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.44 Total: -46.97 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.20 -8.27 -39.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610791473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.481 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds