Wall clock time and date at job start Sun Mar 29 2020 23:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 115.55094 * 2 1 4 4 C 1.53077 * 117.53556 * 214.27810 * 2 1 3 5 5 C 1.53004 * 117.49762 * 145.66162 * 2 1 3 6 6 H 1.09000 * 117.49864 * 215.02010 * 5 2 1 7 7 C 1.50691 * 117.49898 * 0.02703 * 5 2 1 8 8 O 1.21284 * 120.00375 * 359.91261 * 7 5 2 9 9 N 1.34780 * 120.00252 * 180.18403 * 7 5 2 10 10 C 1.39467 * 120.00122 * 174.70120 * 9 7 5 11 11 C 1.38597 * 119.57628 * 185.36985 * 10 9 7 12 12 C 1.40816 * 118.79662 * 179.97438 * 11 10 9 13 13 C 1.41534 * 120.99623 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99764 * 151.69722 * 13 12 11 15 15 C 1.40028 * 120.00233 * 331.69149 * 13 12 11 16 16 N 1.30738 * 119.99890 * 350.18580 * 15 13 12 17 17 Si 1.86799 * 120.00262 * 170.18465 * 15 13 12 18 18 H 1.48506 * 109.47125 * 59.99978 * 17 15 13 19 19 H 1.48500 * 109.47726 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47169 * 300.00386 * 17 15 13 21 21 C 1.41174 * 118.00038 * 359.97438 * 12 11 10 22 22 C 1.37583 * 119.02091 * 0.02562 * 21 12 11 23 23 N 1.32082 * 121.10858 * 359.73610 * 22 21 12 24 24 H 1.08995 * 109.47124 * 274.33532 * 1 2 3 25 25 H 1.08999 * 109.46791 * 34.33680 * 1 2 3 26 26 H 1.08997 * 109.47071 * 154.33706 * 1 2 3 27 27 H 1.08994 * 117.49561 * 145.04171 * 4 2 1 28 28 H 1.09000 * 117.50789 * 0.02562 * 4 2 1 29 29 H 0.97002 * 119.99404 * 354.70049 * 9 7 5 30 30 H 1.08003 * 120.60445 * 0.02562 * 11 10 9 31 31 H 0.97007 * 119.99978 * 179.97438 * 16 15 13 32 32 H 1.08007 * 120.48572 * 180.02562 * 21 12 11 33 33 H 1.08000 * 119.44786 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2377 -1.1216 -0.7645 5 6 2.2364 -1.1207 0.7656 6 1 3.1712 -0.8744 1.2693 7 6 1.3720 -2.1402 1.4613 8 8 0.1638 -2.0523 1.4026 9 7 1.9415 -3.1468 2.1534 10 6 1.1458 -4.0256 2.8881 11 6 1.7455 -4.9878 3.6853 12 6 0.9264 -5.8662 4.4205 13 6 1.4893 -6.8663 5.2487 14 1 0.9505 -7.2140 6.1178 15 6 2.7447 -7.4051 4.9414 16 7 3.3111 -7.1305 3.7955 17 14 3.6101 -8.5163 6.1685 18 1 2.7653 -9.7071 6.4396 19 1 4.9146 -8.9515 5.6081 20 1 3.8387 -7.7731 7.4337 21 6 -0.4730 -5.7191 4.3066 22 6 -0.9762 -4.7333 3.4893 23 7 -0.1733 -3.9263 2.8196 24 1 -0.3633 0.0777 1.0247 25 1 -0.3633 0.8486 -0.5797 26 1 -0.3633 -0.9263 -0.4450 27 1 3.1729 -0.8756 -1.2672 28 1 1.6132 -1.8596 -1.2680 29 1 2.9048 -3.2600 2.1405 30 1 2.8214 -5.0621 3.7423 31 1 4.1810 -7.5035 3.5827 32 1 -1.1388 -6.3708 4.8530 33 1 -2.0457 -4.6150 3.3967 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610791474.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:54 Heat of formation + Delta-G solvation = 22.589826 kcal Electronic energy + Delta-G solvation = -17159.293457 eV Core-core repulsion = 14378.760063 eV Total energy + Delta-G solvation = -2780.533395 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.87651 -38.23873 -36.21247 -34.23870 -33.68332 -30.53989 -29.07986 -28.04404 -25.98592 -24.23717 -21.96078 -21.40512 -20.53896 -19.27892 -17.64832 -16.83954 -15.98949 -15.20117 -15.07199 -14.26912 -14.20957 -13.94139 -13.65079 -12.93994 -12.81518 -12.59286 -12.34492 -12.31272 -11.97887 -11.43012 -11.37928 -11.21261 -10.91705 -10.28759 -10.18132 -10.11926 -9.94407 -9.66785 -9.37186 -9.13228 -7.96053 -7.70922 -7.02828 -6.75417 -4.62773 2.51970 2.80583 3.01018 3.04007 3.14900 3.33687 3.63145 3.85798 4.00382 4.69401 4.73145 4.93145 4.95636 5.31676 5.43557 5.66858 5.71286 5.87531 5.97254 6.05235 6.12236 6.26594 6.58112 6.66177 6.71992 6.79983 6.96273 7.11740 7.38430 7.47407 7.79465 7.96142 8.23406 8.43202 8.70708 8.75526 8.94093 9.68155 10.11116 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.037506 B = 0.005438 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.371309 B = 5147.574923 C = 5769.219468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.155 4.155 5 C -0.191 4.191 6 H 0.119 0.881 7 C 0.526 3.474 8 O -0.476 6.476 9 N -0.656 5.656 10 C 0.336 3.664 11 C -0.237 4.237 12 C 0.144 3.856 13 C -0.458 4.458 14 H 0.081 0.919 15 C 0.076 3.924 16 N -0.797 5.797 17 Si 0.915 3.085 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.281 4.281 22 C 0.116 3.884 23 N -0.551 5.551 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.408 0.592 30 H 0.129 0.871 31 H 0.281 0.719 32 H 0.102 0.898 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.140 7.661 -4.627 9.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 H 0.125 0.875 4 C -0.192 4.192 5 C -0.213 4.213 6 H 0.137 0.863 7 C 0.310 3.690 8 O -0.347 6.347 9 N -0.302 5.302 10 C 0.111 3.889 11 C -0.262 4.262 12 C 0.135 3.865 13 C -0.490 4.490 14 H 0.099 0.901 15 C -0.142 4.142 16 N -0.424 5.424 17 Si 0.739 3.261 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.188 1.188 21 C -0.305 4.305 22 C -0.038 4.038 23 N -0.270 5.270 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.242 0.758 30 H 0.147 0.853 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.103 8.396 -5.380 10.191 hybrid contribution 1.569 -1.413 1.091 2.377 sum 3.672 6.983 -4.289 8.980 Atomic orbital electron populations 1.21362 0.91466 1.01254 1.02751 1.22343 0.96650 0.93253 1.01594 0.87495 1.23072 1.02826 1.01986 0.91320 1.22361 1.02063 1.01260 0.95582 0.86300 1.19696 0.88503 0.81425 0.79335 1.90769 1.13727 1.72741 1.57438 1.43436 1.10087 1.28505 1.48123 1.18227 0.88722 0.89789 0.92178 1.21607 1.00993 0.98321 1.05323 1.17578 0.90307 0.89524 0.89050 1.19529 1.01452 1.17898 1.10092 0.90102 1.25927 0.96783 0.96276 0.95176 1.69740 1.15395 1.37256 1.19965 0.86265 0.78541 0.80334 0.80976 1.18911 1.20276 1.18797 1.21945 0.95972 1.04644 1.07966 1.21774 0.97460 0.91418 0.93151 1.67223 1.02543 1.29532 1.27728 0.91202 0.93700 0.91587 0.88171 0.88274 0.75755 0.85320 0.90766 0.87952 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 8.43 37.16 0.31 -1.26 16 2 C -0.12 -1.48 6.41 -90.58 -0.58 -2.06 16 3 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 4 C -0.15 -1.82 9.89 -26.69 -0.26 -2.09 16 5 C -0.19 -2.63 6.19 -91.77 -0.57 -3.20 16 6 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 7 C 0.53 10.01 7.55 -10.99 -0.08 9.93 16 8 O -0.48 -10.69 11.36 5.55 0.06 -10.62 16 9 N -0.66 -13.12 5.39 -11.49 -0.06 -13.18 16 10 C 0.34 8.23 7.42 -154.71 -1.15 7.08 16 11 C -0.24 -6.06 8.58 -38.47 -0.33 -6.39 16 12 C 0.14 3.81 5.58 -106.55 -0.59 3.21 16 13 C -0.46 -11.84 9.13 -37.66 -0.34 -12.18 16 14 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 15 C 0.08 1.85 5.30 -17.35 -0.09 1.76 16 16 N -0.80 -19.79 10.83 55.55 0.60 -19.19 16 17 Si 0.91 18.03 29.57 -169.99 -5.03 13.01 16 18 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 19 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 C -0.28 -6.96 9.90 -38.71 -0.38 -7.35 16 22 C 0.12 2.82 11.15 -17.68 -0.20 2.62 16 23 N -0.55 -14.16 7.85 -12.53 -0.10 -14.26 16 24 H 0.07 1.13 7.26 -51.93 -0.38 0.75 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 1.06 7.02 -51.93 -0.36 0.69 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.10 1.29 8.05 -51.93 -0.42 0.87 16 29 H 0.41 6.79 8.70 -40.82 -0.36 6.43 16 30 H 0.13 3.27 6.27 -52.48 -0.33 2.94 16 31 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 32 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 33 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 283.99 15.07 4.28 4.28 Total: -1.00 -30.39 283.99 -8.44 -38.82 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -3.93 Total: 11.06 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -4.27 Total: -9.92 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.44 Total: -46.63 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.06 Total: -10.62 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.39 -8.44 -38.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610791474.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.415 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds