Wall clock time and date at job start Sun Mar 29 2020 22:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.34232 * 117.00388 * 179.97438 * 11 10 9 13 13 O 1.20826 * 119.99712 * 0.02562 * 12 11 10 14 14 C 1.50693 * 120.00527 * 179.97438 * 12 11 10 15 15 H 1.09002 * 112.82977 * 309.67323 * 14 12 11 16 16 C 1.53522 * 113.58873 * 178.55586 * 14 12 11 17 17 C 1.51616 * 87.24294 * 245.40616 * 16 14 12 18 18 C 1.38376 * 147.52188 * 180.02562 * 17 16 14 19 19 C 1.38581 * 120.15487 * 179.91397 * 18 17 16 20 20 C 1.38242 * 120.04093 * 0.03430 * 19 18 17 21 21 C 1.38101 * 119.95091 * 359.97438 * 20 19 18 22 22 C 1.38367 * 120.32880 * 359.97438 * 21 20 19 23 23 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 25 25 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 26 26 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 27 27 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 28 28 H 1.08992 * 113.58763 * 0.02562 * 16 14 12 29 29 H 1.09005 * 113.58221 * 130.74026 * 16 14 12 30 30 H 1.07993 * 119.83745 * 359.97438 * 18 17 16 31 31 H 1.08005 * 119.93882 * 180.02562 * 19 18 17 32 32 H 1.07997 * 120.02693 * 179.97438 * 20 19 18 33 33 H 1.07996 * 119.83632 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 8 1.5192 -4.9195 -0.0020 12 6 2.2502 -6.0453 -0.0024 13 8 3.4568 -5.9821 -0.0018 14 6 1.5661 -7.3880 -0.0023 15 1 0.8029 -7.4738 0.7712 16 6 2.5404 -8.5739 -0.0383 17 6 1.9759 -8.9018 -1.4067 18 6 1.9998 -9.7369 -2.5098 19 6 1.1472 -9.5046 -3.5773 20 6 0.2702 -8.4365 -3.5429 21 6 0.2439 -7.6011 -2.4436 22 6 1.0916 -7.8275 -1.3736 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5575 0.8880 25 1 0.6246 -2.5563 -0.8919 26 1 2.8725 -3.6039 -0.8910 27 1 2.8713 -3.6047 0.8890 28 1 3.5888 -8.2766 -0.0583 29 1 2.3308 -9.3335 0.7149 30 1 2.6844 -10.5717 -2.5370 31 1 1.1685 -10.1589 -4.4364 32 1 -0.3938 -8.2555 -4.3751 33 1 -0.4416 -6.7670 -2.4189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745379317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:22 Heat of formation + Delta-G solvation = -36.542607 kcal Electronic energy + Delta-G solvation = -16638.636750 eV Core-core repulsion = 13823.246430 eV Total energy + Delta-G solvation = -2815.390321 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.00613 -39.33386 -36.34051 -35.17431 -33.34893 -30.94214 -30.31011 -27.87784 -26.00399 -24.60108 -22.44187 -21.28258 -20.79885 -19.68697 -17.65925 -16.93263 -16.38715 -15.95457 -15.74808 -15.28543 -14.63709 -14.53160 -13.69983 -13.37091 -13.13985 -12.79885 -12.50048 -12.40901 -12.17799 -11.98378 -11.28019 -11.11857 -11.03187 -10.76567 -10.73577 -10.63074 -10.27861 -9.66006 -9.64558 -9.31332 -8.93840 -8.69700 -8.44896 -6.10933 -4.15386 1.12720 1.28008 2.46281 3.10806 3.28355 3.34468 3.38926 3.66187 4.00452 4.24613 4.28551 4.38875 4.92515 4.98336 5.08041 5.22037 5.25672 5.41554 5.52764 5.56537 5.72384 5.84905 5.97500 6.07858 6.08604 6.26222 6.37912 6.57981 6.62499 6.84213 6.96141 7.54821 7.61440 7.85754 8.15834 8.24717 8.90074 9.49086 11.00569 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.037611 B = 0.004219 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.293015 B = 6635.541574 C = 7031.704059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.074 3.926 11 O -0.352 6.352 12 C 0.473 3.527 13 O -0.512 6.512 14 C -0.044 4.044 15 H 0.131 0.869 16 C -0.058 4.058 17 C -0.121 4.121 18 C -0.099 4.099 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.080 4.080 22 C -0.121 4.121 23 H 0.263 0.737 24 H 0.029 0.971 25 H 0.028 0.972 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.726 -19.264 -3.486 19.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.268 6.268 12 C 0.315 3.685 13 O -0.401 6.401 14 C -0.063 4.063 15 H 0.149 0.851 16 C -0.094 4.094 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.131 4.131 20 C -0.138 4.138 21 C -0.098 4.098 22 C -0.122 4.122 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.128 0.872 29 H 0.119 0.881 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.920 -19.063 -3.495 19.403 hybrid contribution 0.439 1.069 -0.086 1.159 sum 1.359 -17.995 -3.581 18.398 Atomic orbital electron populations 1.69979 1.06092 1.26984 1.49780 1.24980 0.94919 0.99382 0.94840 0.86468 0.79772 0.82799 0.78255 1.20473 1.21030 1.19707 1.20980 0.93186 0.90115 1.52214 0.92255 1.19171 0.94177 0.89003 0.98890 1.23679 0.96428 0.78727 1.00980 1.86527 1.42303 1.15707 1.82235 1.22872 0.86247 0.86742 0.72633 1.90617 1.15592 1.88062 1.45856 1.21201 0.98618 0.90095 0.96337 0.85103 1.21868 1.00666 0.94529 0.92345 1.22277 0.97637 0.96049 0.96128 1.20385 0.99665 0.99351 0.92331 1.21141 0.95957 0.97986 0.98042 1.21017 0.99607 0.95305 0.97881 1.20471 0.98108 0.99349 0.91826 1.21688 0.97902 0.97527 0.95053 0.92707 0.95309 0.95359 0.92325 0.92201 0.87206 0.88058 0.86217 0.85575 0.85350 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.07 1.69 5.40 37.16 0.20 1.89 16 11 O -0.35 -7.23 10.22 -39.26 -0.40 -7.63 16 12 C 0.47 8.52 7.49 36.00 0.27 8.79 16 13 O -0.51 -10.29 15.45 -18.75 -0.29 -10.58 16 14 C -0.04 -0.59 4.44 -92.22 -0.41 -1.00 16 15 H 0.13 1.44 8.14 -51.93 -0.42 1.01 16 16 C -0.06 -0.65 7.77 -27.17 -0.21 -0.86 16 17 C -0.12 -1.49 7.49 -103.79 -0.78 -2.27 16 18 C -0.10 -1.07 10.06 -39.40 -0.40 -1.46 16 19 C -0.11 -1.13 10.06 -39.45 -0.40 -1.53 16 20 C -0.12 -1.30 10.04 -39.63 -0.40 -1.70 16 21 C -0.08 -1.03 10.03 -39.58 -0.40 -1.43 16 22 C -0.12 -1.67 6.98 -103.78 -0.72 -2.39 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 27 H 0.06 1.34 8.13 -51.93 -0.42 0.91 16 28 H 0.11 1.35 7.05 -51.93 -0.37 0.99 16 29 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 293.67 15.07 4.43 4.43 Total: -1.00 -32.00 293.67 -8.48 -40.48 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -4.13 Total: -2.37 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -3.80 Total: -15.07 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.74 Total: -25.71 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.69 Total: -18.21 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.00 -8.48 -40.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745379317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.940 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds