Wall clock time and date at job start Sun Mar 29 2020 22:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38671 * 120.31241 * 2 1 4 4 C 1.38538 * 118.49503 * 179.72215 * 3 2 1 5 5 C 1.39414 * 119.05228 * 0.27065 * 4 3 2 6 6 C 1.48011 * 119.73010 * 180.02562 * 5 4 3 7 7 O 1.21560 * 120.00024 * 353.21418 * 6 5 4 8 8 N 1.34771 * 119.99844 * 173.20737 * 6 5 4 9 9 C 1.36780 * 120.00142 * 184.60173 * 8 6 5 10 10 H 1.08001 * 120.00651 * 224.76341 * 9 8 6 11 11 C 1.39111 * 119.99738 * 44.76812 * 9 8 6 12 12 N 1.31323 * 120.00354 * 7.84630 * 11 9 8 13 13 Si 1.86803 * 119.99978 * 187.85103 * 11 9 8 14 14 H 1.48491 * 109.47406 * 59.99445 * 13 11 9 15 15 H 1.48496 * 109.47048 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46809 * 299.99745 * 13 11 9 17 17 C 1.46510 * 120.00314 * 4.60574 * 8 6 5 18 18 C 1.52992 * 117.50139 * 181.43627 * 17 8 6 19 19 C 1.52993 * 60.00056 * 252.51341 * 18 17 8 20 20 N 1.32787 * 120.53935 * 0.02562 * 5 4 3 21 21 C 1.31531 * 121.62910 * 0.02562 * 20 5 4 22 22 H 1.09001 * 109.46878 * 90.00539 * 1 2 3 23 23 H 1.08994 * 109.47368 * 210.00413 * 1 2 3 24 24 H 1.09004 * 109.47266 * 330.00687 * 1 2 3 25 25 H 1.07991 * 120.75037 * 359.97438 * 3 2 1 26 26 H 1.08000 * 120.47631 * 180.29671 * 4 3 2 27 27 H 0.96992 * 120.00297 * 184.99278 * 12 11 9 28 28 H 1.09000 * 115.54299 * 327.14400 * 17 8 6 29 29 H 1.09007 * 117.49990 * 0.02562 * 18 17 8 30 30 H 1.09000 * 117.50389 * 145.01932 * 18 17 8 31 31 H 1.09005 * 117.49544 * 252.51501 * 19 18 17 32 32 H 1.08999 * 117.52142 * 107.48393 * 19 18 17 33 33 H 1.08005 * 119.54244 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1971 0.0000 4 6 3.5916 1.1532 0.0059 5 6 4.2296 -0.0864 0.0059 6 6 5.7083 -0.1508 0.0127 7 8 6.3616 0.8674 -0.1061 8 7 6.3304 -1.3384 0.1507 9 6 7.6935 -1.3887 0.2517 10 1 8.2502 -2.1219 -0.3131 11 6 8.3629 -0.4956 1.0820 12 7 7.6830 0.2913 1.8840 13 14 10.2291 -0.4153 1.0560 14 1 10.6900 -0.0517 -0.3079 15 1 10.6940 0.6087 2.0257 16 1 10.7867 -1.7399 1.4302 17 6 5.5466 -2.5755 0.1926 18 6 6.3084 -3.8883 0.3847 19 6 5.7003 -3.5490 -0.9775 20 7 3.5215 -1.2097 -0.0003 21 6 2.2063 -1.1960 -0.0070 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8901 0.5137 25 1 1.6844 2.1422 -0.0004 26 1 4.1686 2.0661 0.0109 27 1 8.1441 0.9636 2.4094 28 1 4.5619 -2.4926 0.6526 29 1 7.3928 -3.8316 0.4804 30 1 5.8251 -4.6696 0.9713 31 1 4.8167 -4.1071 -1.2872 32 1 6.3842 -3.2690 -1.7788 33 1 1.6641 -2.1300 -0.0114 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753066884.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:14 Heat of formation + Delta-G solvation = 54.304650 kcal Electronic energy + Delta-G solvation = -17805.597010 eV Core-core repulsion = 15026.438874 eV Total energy + Delta-G solvation = -2779.158137 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.96124 -37.99689 -35.87952 -33.35199 -32.80284 -31.34219 -30.77611 -27.49471 -24.94044 -23.30620 -22.28661 -21.47428 -20.76794 -19.81167 -17.24264 -16.12806 -15.94193 -15.07435 -14.71841 -14.37440 -14.15604 -13.94382 -13.55510 -13.12392 -13.04752 -12.50227 -12.34852 -12.18188 -11.81771 -11.37246 -10.99114 -10.88897 -10.79177 -10.56573 -10.23104 -9.78837 -9.76168 -9.39206 -8.78942 -8.58967 -8.38531 -7.98276 -6.97812 -6.07677 -3.89747 1.30532 1.68566 3.30956 3.35984 3.37971 3.83900 4.25478 4.63309 4.79639 4.91217 5.01155 5.04205 5.12649 5.26021 5.39712 5.50435 5.58761 5.79506 5.82606 5.93364 6.04911 6.10703 6.21229 6.25752 6.42520 6.53970 6.58960 6.67794 6.98474 7.06773 7.38119 7.58514 8.23300 8.36560 9.04631 9.18331 9.62983 10.31658 10.95534 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029324 B = 0.007804 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.632427 B = 3586.982312 C = 4341.201594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.152 4.152 3 C -0.085 4.085 4 C -0.125 4.125 5 C 0.114 3.886 6 C 0.516 3.484 7 O -0.528 6.528 8 N -0.404 5.404 9 C -0.329 4.329 10 H 0.081 0.919 11 C 0.058 3.942 12 N -0.825 5.825 13 Si 0.917 3.083 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.079 3.921 18 C -0.191 4.191 19 C -0.202 4.202 20 N -0.456 5.456 21 C 0.087 3.913 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.130 0.870 26 H 0.142 0.858 27 H 0.267 0.733 28 H 0.151 0.849 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.879 -2.706 -2.263 12.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.155 4.155 3 C -0.111 4.111 4 C -0.146 4.146 5 C -0.024 4.024 6 C 0.303 3.697 7 O -0.406 6.406 8 N -0.122 5.122 9 C -0.456 4.456 10 H 0.099 0.901 11 C -0.153 4.153 12 N -0.459 5.459 13 Si 0.744 3.256 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.201 1.201 17 C -0.026 4.026 18 C -0.229 4.229 19 C -0.241 4.241 20 N -0.167 5.167 21 C -0.072 4.072 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.148 0.852 26 H 0.160 0.840 27 H 0.077 0.923 28 H 0.168 0.832 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.010 -2.836 -2.120 11.566 hybrid contribution 0.401 0.824 0.069 0.919 sum -10.609 -2.012 -2.051 10.992 Atomic orbital electron populations 1.20657 0.90802 1.02622 1.02056 1.20918 0.97027 0.94483 1.03058 1.21375 0.93845 0.97854 0.97976 1.22087 0.94316 0.99606 0.98551 1.22097 0.96570 0.88630 0.95144 1.17346 0.83612 0.85007 0.83738 1.90597 1.64709 1.33690 1.51588 1.42616 1.05319 1.02473 1.61764 1.19008 0.80560 1.21137 1.24936 0.90092 1.25359 0.99486 0.96803 0.93615 1.69806 1.36756 1.17609 1.21707 0.86193 0.83574 0.77728 0.78145 1.19954 1.21025 1.20087 1.22798 0.97226 0.82439 1.00164 1.23143 1.01202 0.99448 0.99116 1.23139 1.02307 1.05966 0.92670 1.68138 1.07093 1.29818 1.11661 1.22771 0.90547 0.97097 0.96745 0.91387 0.91514 0.91755 0.85238 0.84040 0.92290 0.83248 0.88147 0.90043 0.90027 0.89871 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.03 36.01 0.36 -0.62 16 2 C -0.15 -2.09 5.91 -104.35 -0.62 -2.71 16 3 C -0.08 -1.28 9.85 -39.31 -0.39 -1.66 16 4 C -0.12 -2.42 9.63 -39.03 -0.38 -2.80 16 5 C 0.11 2.56 6.67 -83.01 -0.55 2.01 16 6 C 0.52 14.10 6.77 -12.26 -0.08 14.01 16 7 O -0.53 -16.11 14.02 5.31 0.07 -16.03 16 8 N -0.40 -10.82 2.85 -108.74 -0.31 -11.13 16 9 C -0.33 -9.25 7.98 -15.02 -0.12 -9.37 16 10 H 0.08 2.19 7.15 -52.49 -0.38 1.81 16 11 C 0.06 1.65 4.72 -17.45 -0.08 1.57 16 12 N -0.82 -24.81 11.17 55.50 0.62 -24.19 16 13 Si 0.92 21.88 29.56 -169.99 -5.03 16.85 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 C 0.08 1.77 5.22 -67.93 -0.35 1.42 16 18 C -0.19 -3.78 9.80 -26.74 -0.26 -4.04 16 19 C -0.20 -3.89 10.38 -26.74 -0.28 -4.17 16 20 N -0.46 -8.94 5.96 -9.81 -0.06 -8.99 16 21 C 0.09 1.34 10.86 -17.57 -0.19 1.15 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 24 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 25 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 26 H 0.14 2.81 7.66 -52.49 -0.40 2.40 16 27 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.15 3.23 5.15 -54.29 -0.28 2.95 16 29 H 0.10 2.13 6.69 -51.93 -0.35 1.78 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.15 1.78 8.06 -52.48 -0.42 1.35 16 LS Contribution 282.51 15.07 4.26 4.26 Total: -1.00 -33.24 282.51 -7.30 -40.54 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -3.92 Total: 3.92 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.94 Total: -5.22 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.25 Total: -44.31 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.07 Total: -16.03 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.24 -7.30 -40.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753066884.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.840 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds