Wall clock time and date at job start Sun Mar 29 2020 22:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00283 * 2 1 4 4 C 1.52995 * 109.46966 * 124.99646 * 3 2 1 5 5 O 1.45203 * 109.47237 * 180.02562 * 4 3 2 6 6 C 1.34771 * 117.00457 * 180.02562 * 5 4 3 7 7 O 1.21515 * 120.00026 * 359.97438 * 6 5 4 8 8 C 1.47501 * 120.00094 * 179.97438 * 6 5 4 9 9 C 1.40073 * 119.90212 * 180.02562 * 8 6 5 10 10 C 1.36300 * 120.10206 * 180.25905 * 9 8 6 11 11 C 1.40893 * 119.89711 * 359.51403 * 10 9 8 12 12 C 1.41091 * 120.10255 * 180.23496 * 11 10 9 13 13 H 1.08001 * 120.00415 * 204.81651 * 12 11 10 14 14 C 1.40248 * 119.99756 * 24.80634 * 12 11 10 15 15 N 1.30632 * 119.99956 * 17.73115 * 14 12 11 16 16 Si 1.86797 * 120.00167 * 197.73172 * 14 12 11 17 17 H 1.48501 * 109.47351 * 90.00385 * 16 14 12 18 18 H 1.48499 * 109.47050 * 210.00026 * 16 14 12 19 19 H 1.48500 * 109.47161 * 329.99778 * 16 14 12 20 20 C 1.40906 * 119.80286 * 0.50317 * 11 10 9 21 21 C 1.36297 * 119.89800 * 359.73440 * 20 11 10 22 22 H 1.08002 * 119.99362 * 0.02562 * 1 2 3 23 23 H 1.08001 * 120.00417 * 180.02562 * 1 2 3 24 24 H 1.08000 * 119.99794 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.46626 * 4.99963 * 3 2 1 26 26 H 1.08989 * 109.46956 * 244.99664 * 3 2 1 27 27 H 1.09003 * 109.47363 * 60.00320 * 4 3 2 28 28 H 1.09003 * 109.47813 * 299.99792 * 4 3 2 29 29 H 1.08002 * 119.94534 * 359.97438 * 9 8 6 30 30 H 1.08004 * 120.05042 * 179.74750 * 10 9 8 31 31 H 0.97000 * 120.00424 * 179.97438 * 15 14 12 32 32 H 1.07999 * 120.05172 * 179.70589 * 20 11 10 33 33 H 1.07997 * 119.94971 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 8 3.7607 2.5907 1.1821 6 6 4.6634 2.7760 2.1655 7 8 4.8390 1.9105 3.0001 8 6 5.4383 4.0295 2.2287 9 6 6.3763 4.2197 3.2514 10 6 7.0908 5.3786 3.3168 11 6 6.8920 6.3818 2.3477 12 6 7.6329 7.5811 2.4083 13 1 7.2404 8.4816 1.9595 14 6 8.8789 7.6038 3.0517 15 7 9.5134 6.4862 3.2861 16 14 9.6312 9.2320 3.5733 17 1 9.1915 9.5610 4.9531 18 1 11.1120 9.1271 3.5376 19 1 9.1882 10.3023 2.6441 20 6 5.9470 6.1863 1.3209 21 6 5.2336 5.0263 1.2661 22 1 -0.5399 0.9354 -0.0004 23 1 -0.5401 -0.9353 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3587 2.1316 0.0896 26 1 2.6214 1.4025 -0.9313 27 1 3.7400 0.5065 1.0921 28 1 2.4773 1.2356 2.1131 29 1 6.5304 3.4488 3.9919 30 1 7.8110 5.5261 4.1080 31 1 10.3753 6.5018 3.7307 32 1 5.7880 6.9546 0.5787 33 1 4.5094 4.8754 0.4793 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758687610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:51 Heat of formation + Delta-G solvation = -67.018106 kcal Electronic energy + Delta-G solvation = -16439.723712 eV Core-core repulsion = 13623.011874 eV Total energy + Delta-G solvation = -2816.711837 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.56086 -37.50252 -36.10526 -34.80289 -33.96209 -30.42372 -29.76301 -29.30980 -26.17535 -23.50265 -21.99541 -21.02528 -20.16156 -19.60453 -17.59117 -16.91049 -16.13002 -16.04067 -15.43365 -15.03398 -14.08329 -13.80045 -13.68662 -13.28345 -12.98354 -12.64896 -12.23078 -12.06067 -11.68093 -11.56236 -11.34802 -11.30706 -11.16286 -10.98291 -10.69783 -10.12190 -10.08410 -9.61827 -9.55558 -9.41414 -9.39072 -7.75561 -7.64780 -7.09727 -4.68260 2.05441 2.06209 2.86833 2.92836 2.95596 3.02527 3.43570 3.64287 3.70556 4.46803 4.80073 4.94461 5.16608 5.20927 5.50830 5.51303 5.67716 5.81918 5.87162 6.10820 6.23941 6.25111 6.43231 6.57117 6.74084 6.80715 6.98557 7.05315 7.14908 7.40694 7.61044 7.78483 7.86764 8.00413 8.35603 8.55979 8.68635 8.76552 9.81676 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.066175 B = 0.003874 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.016838 B = 7225.356055 C = 7539.342373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C -0.094 4.094 4 C 0.072 3.928 5 O -0.363 6.363 6 C 0.514 3.486 7 O -0.552 6.552 8 C -0.275 4.275 9 C -0.033 4.033 10 C -0.185 4.185 11 C 0.131 3.869 12 C -0.435 4.435 13 H 0.087 0.913 14 C 0.072 3.928 15 N -0.764 5.764 16 Si 0.917 3.083 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.258 1.258 20 C -0.240 4.240 21 C -0.028 4.028 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.111 0.889 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.289 0.711 32 H 0.100 0.900 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 -4.275 -3.843 9.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.168 4.168 3 C -0.131 4.131 4 C -0.002 4.002 5 O -0.281 6.281 6 C 0.366 3.634 7 O -0.445 6.445 8 C -0.277 4.277 9 C -0.052 4.052 10 C -0.204 4.204 11 C 0.128 3.872 12 C -0.462 4.462 13 H 0.106 0.894 14 C -0.150 4.150 15 N -0.386 5.386 16 Si 0.740 3.260 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.182 1.182 20 C -0.259 4.259 21 C -0.047 4.047 22 H 0.116 0.884 23 H 0.116 0.884 24 H 0.129 0.871 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.141 0.859 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.679 -4.640 -3.532 9.642 hybrid contribution 0.420 0.365 0.270 0.619 sum -7.259 -4.275 -3.262 9.033 Atomic orbital electron populations 1.23882 0.95829 1.01986 1.01046 1.22808 0.96010 0.98057 0.99921 1.20692 0.97917 0.95965 0.98556 1.22740 0.93769 0.85087 0.98625 1.86560 1.51160 1.39023 1.51394 1.21581 0.76735 0.87628 0.77427 1.90699 1.67413 1.45582 1.40847 1.18239 1.08905 0.94274 1.06306 1.20464 0.92944 0.96629 0.95123 1.20981 1.03277 0.94743 1.01367 1.17850 0.88873 0.92126 0.88367 1.19933 1.00867 0.96752 1.28663 0.89448 1.26169 0.97101 0.98662 0.93090 1.69739 1.12738 1.28833 1.27315 0.86159 0.78227 0.81351 0.80279 1.18814 1.19918 1.18192 1.20721 1.05081 0.98525 1.01605 1.20546 0.95884 0.92854 0.95368 0.88386 0.88352 0.87103 0.90421 0.89836 0.91776 0.91807 0.88044 0.85927 0.89960 0.88203 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.69 14.32 29.01 0.42 -1.27 16 2 C -0.15 -1.50 9.52 -36.03 -0.34 -1.84 16 3 C -0.09 -1.11 6.04 -27.88 -0.17 -1.28 16 4 C 0.07 1.11 5.46 37.16 0.20 1.31 16 5 O -0.36 -7.03 9.45 -40.68 -0.38 -7.41 16 6 C 0.51 11.63 7.89 34.51 0.27 11.90 16 7 O -0.55 -13.37 16.11 -19.28 -0.31 -13.68 16 8 C -0.27 -6.55 5.89 -104.75 -0.62 -7.17 16 9 C -0.03 -0.81 9.52 -39.59 -0.38 -1.18 16 10 C -0.18 -4.69 8.63 -39.28 -0.34 -5.03 16 11 C 0.13 3.33 5.57 -106.80 -0.60 2.73 16 12 C -0.44 -10.66 9.04 -37.75 -0.34 -11.00 16 13 H 0.09 2.02 7.91 -52.49 -0.42 1.60 16 14 C 0.07 1.67 5.14 -17.31 -0.09 1.58 16 15 N -0.76 -18.34 10.95 55.56 0.61 -17.73 16 16 Si 0.92 17.03 29.60 -169.99 -5.03 12.00 16 17 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 18 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 19 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 20 C -0.24 -5.64 9.73 -39.27 -0.38 -6.02 16 21 C -0.03 -0.63 9.55 -39.59 -0.38 -1.01 16 22 H 0.10 0.82 7.84 -52.49 -0.41 0.41 16 23 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 24 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 25 H 0.08 0.89 7.79 -51.93 -0.40 0.48 16 26 H 0.08 0.95 8.14 -51.94 -0.42 0.53 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.10 2.42 7.63 -52.49 -0.40 2.02 16 30 H 0.12 3.15 6.16 -52.48 -0.32 2.83 16 31 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 32 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 33 H 0.10 2.06 7.59 -52.49 -0.40 1.66 16 LS Contribution 295.54 15.07 4.45 4.45 Total: -1.00 -27.48 295.54 -7.43 -34.90 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -4.02 Total: 5.74 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -2.74 Total: -18.28 kcal Atomic # 7 Polarization: -18.34 SS G_CDS: 0.61 Total: -17.73 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.69 Total: -21.09 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.48 -7.43 -34.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758687610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.116 kcal (2) G-P(sol) polarization free energy of solvation -27.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds