Wall clock time and date at job start Sun Mar 29 2020 22:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33020 * 120.00277 * 2 1 4 4 C 1.50701 * 120.00277 * 179.97438 * 3 2 1 5 5 C 1.47056 * 119.99679 * 0.02562 * 3 2 1 6 6 O 1.21612 * 120.00207 * 359.97438 * 5 3 2 7 7 N 1.34784 * 119.99937 * 179.97438 * 5 3 2 8 8 C 1.39364 * 119.99973 * 185.06124 * 7 5 3 9 9 C 1.38628 * 119.58289 * 185.36355 * 8 7 5 10 10 C 1.40802 * 118.79440 * 179.70141 * 9 8 7 11 11 C 1.41546 * 120.99300 * 180.25143 * 10 9 8 12 12 H 1.07998 * 119.99347 * 153.75642 * 11 10 9 13 13 C 1.40027 * 120.00161 * 333.74874 * 11 10 9 14 14 N 1.30746 * 119.99979 * 350.16194 * 13 11 10 15 15 Si 1.86802 * 119.99920 * 170.15591 * 13 11 10 16 16 H 1.48495 * 109.46953 * 60.00349 * 15 13 11 17 17 H 1.48502 * 109.46863 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.46946 * 300.00448 * 15 13 11 19 19 C 1.41183 * 118.00679 * 0.26995 * 10 9 8 20 20 C 1.37585 * 119.02332 * 0.02562 * 19 10 9 21 21 N 1.32085 * 121.11135 * 359.97438 * 20 19 10 22 22 H 1.08998 * 109.46612 * 299.99465 * 1 2 3 23 23 H 1.08996 * 109.47380 * 59.99371 * 1 2 3 24 24 H 1.09001 * 109.47141 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99926 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47325 * 270.00357 * 4 3 2 27 27 H 1.09001 * 109.46639 * 30.01053 * 4 3 2 28 28 H 1.09007 * 109.46906 * 150.00632 * 4 3 2 29 29 H 0.96999 * 119.99632 * 5.05390 * 7 5 3 30 30 H 1.08007 * 120.60156 * 359.96734 * 9 8 7 31 31 H 0.97004 * 120.00016 * 179.97438 * 14 13 11 32 32 H 1.07997 * 120.48448 * 179.97438 * 19 10 9 33 33 H 1.07993 * 119.44228 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1520 0.0000 4 6 3.6792 1.1520 0.0006 5 6 1.4369 2.4255 0.0006 6 8 0.2208 2.4255 0.0006 7 7 2.1108 3.5927 0.0011 8 6 1.4181 4.7973 0.1081 9 6 2.1067 5.9951 -0.0043 10 6 1.3894 7.2022 0.1001 11 6 2.0448 8.4517 -0.0128 12 1 1.4982 9.3194 -0.3516 13 6 3.4016 8.5628 0.3150 14 7 4.0151 7.5700 0.9044 15 14 4.3351 10.1293 -0.0901 16 1 3.7023 11.2771 0.6080 17 1 5.7452 9.9945 0.3557 18 1 4.3000 10.3613 -1.5564 19 6 -0.0031 7.1289 0.3212 20 6 -0.5983 5.8928 0.4254 21 7 0.1106 4.7831 0.3216 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 2.0470 -0.9353 -0.0004 26 1 4.0421 1.1521 1.0283 27 1 4.0426 0.2619 -0.5131 28 1 4.0427 2.0419 -0.5132 29 1 3.0780 3.5943 -0.0729 30 1 3.1735 6.0023 -0.1732 31 1 4.9552 7.6468 1.1311 32 1 -0.5923 8.0298 0.4081 33 1 -1.6629 5.8288 0.5949 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764205712.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:48 Heat of formation + Delta-G solvation = 11.767504 kcal Electronic energy + Delta-G solvation = -17182.942774 eV Core-core repulsion = 14401.940088 eV Total energy + Delta-G solvation = -2781.002686 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.73238 -37.96419 -34.84174 -34.25123 -33.78155 -30.54255 -30.08925 -28.32719 -25.98944 -24.81786 -22.93204 -21.91936 -20.46532 -18.76486 -17.62965 -16.13884 -15.70538 -15.21308 -14.73855 -14.23872 -14.19519 -13.89134 -13.52359 -13.15412 -12.78651 -12.66743 -12.58124 -12.31110 -12.08240 -11.76639 -11.41733 -11.33269 -11.19703 -10.90214 -10.27477 -10.12550 -9.68753 -9.37407 -9.10913 -8.87089 -7.97504 -7.70078 -7.00518 -6.73113 -4.62506 1.61809 2.73494 2.82149 3.00933 3.04022 3.25455 3.74578 3.85141 3.89553 4.71135 4.91927 5.01120 5.30784 5.49767 5.62715 5.69313 5.77688 5.95196 5.98653 6.06854 6.27194 6.57451 6.60791 6.68975 6.75931 6.84144 6.97621 7.13946 7.40381 7.49134 7.81285 7.98158 8.24559 8.44377 8.71760 8.76179 8.94595 9.70101 10.10365 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.033008 B = 0.005828 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.079867 B = 4803.379609 C = 5581.255360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.083 4.083 3 C -0.189 4.189 4 C -0.115 4.115 5 C 0.533 3.467 6 O -0.479 6.479 7 N -0.656 5.656 8 C 0.336 3.664 9 C -0.240 4.240 10 C 0.142 3.858 11 C -0.455 4.455 12 H 0.081 0.919 13 C 0.076 3.924 14 N -0.796 5.796 15 Si 0.915 3.085 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.283 4.283 20 C 0.117 3.883 21 N -0.553 5.553 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.046 0.954 25 H 0.120 0.880 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.407 0.593 30 H 0.133 0.867 31 H 0.281 0.719 32 H 0.102 0.898 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.751 -8.875 -1.479 9.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.102 4.102 3 C -0.193 4.193 4 C -0.172 4.172 5 C 0.320 3.680 6 O -0.352 6.352 7 N -0.302 5.302 8 C 0.111 3.889 9 C -0.265 4.265 10 C 0.134 3.866 11 C -0.487 4.487 12 H 0.099 0.901 13 C -0.142 4.142 14 N -0.423 5.423 15 Si 0.739 3.261 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.188 1.188 19 C -0.307 4.307 20 C -0.038 4.038 21 N -0.272 5.272 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.065 0.935 25 H 0.137 0.863 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.243 0.757 30 H 0.150 0.850 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.687 -9.825 -1.290 10.052 hybrid contribution 1.591 1.568 -0.138 2.238 sum 3.279 -8.257 -1.428 8.998 Atomic orbital electron populations 1.20999 0.91788 1.00353 1.04434 1.23515 0.97204 0.96319 0.93177 1.21631 0.96282 0.93646 1.07708 1.20782 0.91245 1.02687 1.02467 1.18458 0.87742 0.83674 0.78090 1.90840 1.12792 1.86611 1.44962 1.43418 1.10213 1.04472 1.72077 1.18221 0.89484 0.84138 0.97049 1.21680 1.01363 0.90017 1.13450 1.17583 0.90535 0.92873 0.85651 1.19550 0.94178 0.95415 1.39528 0.90110 1.25944 0.97814 0.98198 0.92281 1.69738 1.11854 1.31853 1.28816 0.86254 0.78234 0.81530 0.80044 1.18907 1.20262 1.18792 1.21923 0.96479 0.97163 1.15119 1.21756 0.97723 0.87821 0.96450 1.67204 1.05609 1.31075 1.23295 0.90035 0.90145 0.93535 0.86253 0.91064 0.91422 0.91638 0.75707 0.84984 0.90771 0.87991 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 8.45 36.01 0.30 -1.36 16 2 C -0.08 -1.06 9.95 -36.12 -0.36 -1.42 16 3 C -0.19 -2.77 6.00 -102.86 -0.62 -3.39 16 4 C -0.11 -1.28 9.65 36.01 0.35 -0.93 16 5 C 0.53 10.50 7.67 -12.68 -0.10 10.40 16 6 O -0.48 -10.95 11.36 5.27 0.06 -10.89 16 7 N -0.66 -13.43 5.34 -12.58 -0.07 -13.50 16 8 C 0.34 8.34 7.40 -154.78 -1.15 7.19 16 9 C -0.24 -6.18 8.61 -38.47 -0.33 -6.51 16 10 C 0.14 3.77 5.60 -106.55 -0.60 3.18 16 11 C -0.46 -11.78 9.14 -37.65 -0.34 -12.13 16 12 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 13 C 0.08 1.83 5.31 -17.34 -0.09 1.74 16 14 N -0.80 -19.70 10.70 55.55 0.59 -19.10 16 15 Si 0.92 18.02 29.57 -169.99 -5.03 12.99 16 16 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 17 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 18 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 19 C -0.28 -7.03 9.90 -38.70 -0.38 -7.41 16 20 C 0.12 2.85 11.15 -17.68 -0.20 2.65 16 21 N -0.55 -14.32 7.88 -12.54 -0.10 -14.42 16 22 H 0.08 1.31 7.22 -51.93 -0.37 0.94 16 23 H 0.08 1.27 7.22 -51.93 -0.37 0.90 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 28 H 0.06 0.71 6.64 -51.93 -0.34 0.37 16 29 H 0.41 7.03 6.76 -40.82 -0.28 6.75 16 30 H 0.13 3.38 6.11 -52.48 -0.32 3.06 16 31 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 32 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 33 H 0.12 2.61 8.06 -52.49 -0.42 2.18 16 LS Contribution 283.63 15.07 4.27 4.27 Total: -1.00 -30.55 283.63 -7.55 -38.10 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -3.77 Total: 10.52 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -3.51 Total: -7.98 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.43 Total: -47.02 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.06 Total: -10.89 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.55 -7.55 -38.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764205712.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.867 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds