Wall clock time and date at job start Sun Mar 29 2020 22:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00059 * 2 1 4 4 O 1.45191 * 109.47434 * 134.99435 * 3 2 1 5 5 C 1.34225 * 117.00135 * 179.97438 * 4 3 2 6 6 O 1.20821 * 120.00269 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00236 * 180.02562 * 5 4 3 8 8 C 1.50700 * 109.47474 * 180.02562 * 7 5 4 9 9 C 1.37633 * 120.12442 * 264.99900 * 8 7 5 10 10 C 1.38620 * 120.24819 * 179.97438 * 9 8 7 11 11 C 1.38653 * 120.49963 * 0.02562 * 10 9 8 12 12 C 1.37603 * 120.24949 * 0.02562 * 11 10 9 13 13 C 1.40697 * 120.12861 * 84.72291 * 8 7 5 14 14 C 1.41396 * 120.24692 * 0.02562 * 13 8 7 15 15 H 1.08002 * 119.99440 * 333.89889 * 14 13 8 16 16 C 1.39936 * 120.00256 * 153.89938 * 14 13 8 17 17 N 1.30823 * 120.00218 * 343.70459 * 16 14 13 18 18 Si 1.86806 * 120.00088 * 163.70691 * 16 14 13 19 19 H 1.48494 * 109.47040 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47003 * 120.00050 * 18 16 14 21 21 H 1.48501 * 109.47005 * 240.00090 * 18 16 14 22 22 H 1.08002 * 120.00159 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.99893 * 180.02562 * 1 2 3 24 24 H 1.08002 * 120.00159 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.46896 * 14.99490 * 3 2 1 26 26 H 1.08997 * 109.46958 * 255.00157 * 3 2 1 27 27 H 1.09007 * 109.46910 * 300.00002 * 7 5 4 28 28 H 1.08998 * 109.47456 * 59.99778 * 7 5 4 29 29 H 1.08008 * 119.87960 * 0.02562 * 9 8 7 30 30 H 1.07995 * 119.74938 * 179.97438 * 10 9 8 31 31 H 1.08002 * 119.87746 * 180.02562 * 11 10 9 32 32 H 1.08001 * 120.12586 * 179.97438 * 12 11 10 33 33 H 0.97001 * 120.00340 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1437 1.2404 0.9680 5 6 3.9170 2.3304 1.0920 6 8 3.6984 3.3065 0.4144 7 6 5.0582 2.3368 2.0763 8 6 5.7623 3.6680 2.0206 9 6 6.8772 3.8272 1.2295 10 6 7.5265 5.0507 1.1759 11 6 7.0625 6.1267 1.9171 12 6 5.9503 5.9902 2.7158 13 6 5.2790 4.7546 2.7726 14 6 4.1314 4.6043 3.5849 15 1 3.3913 3.8567 3.3407 16 6 3.9547 5.4243 4.7050 17 7 4.9667 6.0970 5.1894 18 14 2.2737 5.5581 5.5087 19 1 1.3052 4.7038 4.7757 20 1 2.3626 5.1059 6.9204 21 1 1.8173 6.9707 5.4692 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9354 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3855 2.1161 0.2659 26 1 2.4755 1.4867 -0.9926 27 1 4.6713 2.1726 3.0821 28 1 5.7608 1.5429 1.8233 29 1 7.2471 2.9959 0.6475 30 1 8.4009 5.1665 0.5527 31 1 7.5760 7.0756 1.8675 32 1 5.5909 6.8295 3.2926 33 1 4.8442 6.6657 5.9656 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777158688.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:25 Heat of formation + Delta-G solvation = -55.768057 kcal Electronic energy + Delta-G solvation = -17178.539655 eV Core-core repulsion = 14362.315657 eV Total energy + Delta-G solvation = -2816.223999 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.88155 -37.66536 -36.07434 -33.89317 -33.65945 -31.80646 -29.50239 -27.60929 -26.06774 -24.96148 -21.18286 -20.93362 -20.10605 -19.27450 -17.20461 -17.05772 -16.32188 -15.84125 -15.39197 -14.58334 -14.38852 -13.82730 -13.62640 -13.32302 -12.70508 -12.55753 -12.29178 -11.82016 -11.58837 -11.23919 -11.19901 -11.08465 -11.00033 -10.72704 -10.47480 -10.40819 -9.78747 -9.52445 -9.48689 -9.39286 -9.19317 -7.37126 -7.34409 -6.77111 -4.38971 1.97402 2.72466 2.89397 2.96861 3.06742 3.12417 3.24299 3.51290 3.92343 4.62927 4.80705 5.02964 5.34184 5.48518 5.60726 5.70825 5.77428 5.97385 6.08371 6.25776 6.40675 6.40780 6.48046 6.54708 6.74164 6.98680 7.05510 7.25848 7.37913 7.60693 7.87615 8.02196 8.09294 8.27066 8.48108 8.61624 8.87280 8.96664 10.16879 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.016792 B = 0.008151 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.102064 B = 3434.543899 C = 4829.061407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.090 3.910 4 O -0.365 6.365 5 C 0.458 3.542 6 O -0.493 6.493 7 C -0.041 4.041 8 C -0.195 4.195 9 C -0.077 4.077 10 C -0.240 4.240 11 C -0.104 4.104 12 C -0.158 4.158 13 C 0.130 3.870 14 C -0.458 4.458 15 H 0.074 0.926 16 C 0.078 3.922 17 N -0.792 5.792 18 Si 0.903 3.097 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.271 1.271 22 H 0.099 0.901 23 H 0.105 0.895 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 -8.027 -4.335 10.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.168 4.168 3 C 0.016 3.984 4 O -0.284 6.284 5 C 0.301 3.699 6 O -0.378 6.378 7 C -0.079 4.079 8 C -0.197 4.197 9 C -0.095 4.095 10 C -0.259 4.259 11 C -0.123 4.123 12 C -0.177 4.177 13 C 0.127 3.873 14 C -0.487 4.487 15 H 0.092 0.908 16 C -0.140 4.140 17 N -0.417 5.417 18 Si 0.728 3.272 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.197 1.197 22 H 0.117 0.883 23 H 0.123 0.877 24 H 0.136 0.864 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.136 0.864 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.838 -7.567 -4.362 9.985 hybrid contribution -0.811 0.240 0.273 0.889 sum -5.649 -7.327 -4.088 10.115 Atomic orbital electron populations 1.23859 0.95513 1.02366 0.99907 1.22746 0.95661 0.97947 1.00403 1.21925 0.87940 0.96210 0.92320 1.86552 1.41634 1.42386 1.57804 1.24511 0.82608 0.79858 0.82945 1.90637 1.69233 1.34316 1.43652 1.19989 0.91970 0.98141 0.97753 1.19066 0.99171 0.93309 1.08117 1.20328 0.95743 0.96072 0.97363 1.20317 1.03429 0.94676 1.07483 1.20705 0.97284 0.96745 0.97548 1.21308 0.97395 0.98024 1.01010 1.17358 0.91072 0.89802 0.89025 1.19527 1.05169 1.16474 1.07558 0.90761 1.25882 0.97870 0.93619 0.96653 1.69821 1.30857 1.21694 1.19366 0.86333 0.82633 0.79197 0.79055 1.18447 1.19874 1.19650 0.88258 0.87658 0.86365 0.90940 0.90683 0.87427 0.89337 0.89527 0.89497 0.89439 0.86403 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 14.31 29.01 0.42 -1.37 16 2 C -0.15 -1.75 9.90 -36.03 -0.36 -2.10 16 3 C 0.09 1.33 5.88 36.01 0.21 1.55 16 4 O -0.37 -6.48 10.20 -39.25 -0.40 -6.88 16 5 C 0.46 9.46 7.57 36.01 0.27 9.73 16 6 O -0.49 -11.76 15.78 -18.75 -0.30 -12.06 16 7 C -0.04 -0.83 5.29 -29.03 -0.15 -0.99 16 8 C -0.20 -4.70 4.43 -103.91 -0.46 -5.16 16 9 C -0.08 -1.76 9.66 -39.66 -0.38 -2.14 16 10 C -0.24 -5.52 10.05 -39.29 -0.39 -5.92 16 11 C -0.10 -2.52 10.02 -39.66 -0.40 -2.92 16 12 C -0.16 -4.20 8.69 -38.87 -0.34 -4.53 16 13 C 0.13 3.47 5.56 -106.82 -0.59 2.87 16 14 C -0.46 -12.07 8.14 -37.75 -0.31 -12.38 16 15 H 0.07 1.92 6.67 -52.49 -0.35 1.57 16 16 C 0.08 1.95 5.16 -17.35 -0.09 1.86 16 17 N -0.79 -20.33 10.95 55.55 0.61 -19.72 16 18 Si 0.90 18.86 29.59 -169.99 -5.03 13.83 16 19 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H 0.10 0.96 7.90 -52.49 -0.41 0.54 16 23 H 0.11 0.83 8.06 -52.48 -0.42 0.40 16 24 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 25 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 26 H 0.08 1.08 8.13 -51.93 -0.42 0.65 16 27 H 0.11 2.16 7.08 -51.92 -0.37 1.79 16 28 H 0.09 1.50 8.05 -51.93 -0.42 1.08 16 29 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 30 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.12 3.21 6.20 -52.49 -0.33 2.88 16 33 H 0.28 6.52 8.30 -40.82 -0.34 6.19 16 LS Contribution 292.99 15.07 4.42 4.42 Total: -1.00 -29.35 292.99 -7.23 -36.58 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -3.95 Total: 5.33 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -2.58 Total: -21.51 kcal Atomic # 7 Polarization: -20.33 SS G_CDS: 0.61 Total: -19.72 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.70 Total: -18.94 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.35 -7.23 -36.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777158688.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.183 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds