Wall clock time and date at job start Sun Mar 29 2020 22:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50697 * 120.00061 * 2 1 4 4 C 1.53005 * 109.47164 * 124.99949 * 3 2 1 5 5 H 1.09002 * 109.47069 * 305.00560 * 4 3 2 6 6 C 1.50696 * 109.46706 * 64.99944 * 4 3 2 7 7 O 1.21216 * 119.99925 * 120.00318 * 6 4 3 8 8 O 1.34313 * 120.00225 * 300.00062 * 6 4 3 9 9 C 1.34924 * 117.00019 * 180.02562 * 8 6 4 10 10 H 1.08004 * 119.99682 * 359.72874 * 9 8 6 11 11 C 1.38745 * 119.99953 * 179.97438 * 9 8 6 12 12 N 1.31442 * 120.00252 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00064 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46819 * 60.00419 * 13 11 9 15 15 H 1.48503 * 109.47158 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47620 * 300.00566 * 13 11 9 17 17 C 1.50694 * 109.47091 * 184.99943 * 4 3 2 18 18 C 1.38234 * 120.00320 * 299.72871 * 17 4 3 19 19 C 1.38235 * 120.00293 * 179.78758 * 18 17 4 20 20 C 1.38237 * 119.99915 * 0.44527 * 19 18 17 21 21 C 1.38237 * 119.99711 * 359.80559 * 20 19 18 22 22 C 1.38234 * 120.00417 * 359.97438 * 21 20 19 23 23 H 1.07990 * 120.00219 * 180.02562 * 1 2 3 24 24 H 1.08001 * 119.99505 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.99505 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.46993 * 5.00114 * 3 2 1 27 27 H 1.08998 * 109.47453 * 245.00297 * 3 2 1 28 28 H 0.97005 * 120.00277 * 179.97438 * 12 11 9 29 29 H 1.08001 * 119.99636 * 359.97438 * 18 17 4 30 30 H 1.07996 * 120.00440 * 180.27159 * 19 18 17 31 31 H 1.08001 * 120.00353 * 179.83064 * 20 19 18 32 32 H 1.08005 * 120.00077 * 180.02562 * 21 20 19 33 33 H 1.07996 * 119.99945 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 1 2.4884 1.1468 2.1061 6 6 4.0839 0.2671 0.9949 7 8 5.2546 0.5740 0.9275 8 8 3.7214 -1.0229 0.9033 9 6 4.7096 -1.9265 0.7373 10 1 5.7370 -1.5986 0.6796 11 6 4.4054 -3.2764 0.6359 12 7 3.1546 -3.6750 0.7008 13 14 5.7734 -4.5273 0.4054 14 1 6.7085 -4.4559 1.5568 15 1 5.1894 -5.8904 0.3252 16 1 6.5098 -4.2302 -0.8494 17 6 3.6991 2.6839 1.2541 18 6 4.4587 3.1386 0.1925 19 6 5.0642 4.3796 0.2572 20 6 4.9177 5.1620 1.3873 21 6 4.1623 4.7051 2.4511 22 6 3.5531 3.4661 2.3846 23 1 -0.5400 -0.9352 0.0004 24 1 -0.5399 0.9354 0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 2.9418 -4.6187 0.6295 29 1 4.5766 2.5255 -0.6888 30 1 5.6540 4.7367 -0.5740 31 1 5.3929 6.1305 1.4391 32 1 4.0474 5.3166 3.3340 33 1 2.9633 3.1090 3.2159 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778417697.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:02 Heat of formation + Delta-G solvation = -42.126551 kcal Electronic energy + Delta-G solvation = -17396.513596 eV Core-core repulsion = 14580.881138 eV Total energy + Delta-G solvation = -2815.632459 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.77582 -38.40358 -35.49727 -34.91571 -32.10361 -31.98431 -30.64322 -28.48947 -25.50783 -24.10442 -22.33173 -21.78552 -19.76164 -18.94141 -17.68085 -16.54996 -16.48497 -15.46139 -15.04357 -14.53483 -14.29802 -14.16962 -13.97084 -13.25842 -13.11369 -12.76941 -12.42057 -12.23970 -11.80458 -11.66606 -11.21804 -11.13598 -10.87721 -10.69877 -10.49759 -10.34019 -10.18377 -9.71776 -8.98182 -8.82734 -8.60583 -8.55294 -8.40803 -6.40305 -4.07224 1.58703 1.68732 2.86079 3.14404 3.19670 3.23205 3.56672 3.87484 4.10746 4.64009 4.89165 5.08998 5.15736 5.19783 5.33623 5.50718 5.51943 5.69924 5.79809 5.82606 5.90626 6.01285 6.19830 6.26066 6.34363 6.55655 6.69028 6.74976 6.80680 6.94921 7.25477 7.37225 7.40261 7.50595 7.97714 8.73538 9.09593 9.87703 10.77485 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.006768 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.186700 B = 4136.183542 C = 4925.739513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.142 4.142 3 C -0.077 4.077 4 C -0.032 4.032 5 H 0.102 0.898 6 C 0.403 3.597 7 O -0.547 6.547 8 O -0.208 6.208 9 C -0.383 4.383 10 H 0.093 0.907 11 C 0.044 3.956 12 N -0.865 5.865 13 Si 0.941 3.059 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.271 1.271 17 C -0.058 4.058 18 C -0.080 4.080 19 C -0.125 4.125 20 C -0.126 4.126 21 C -0.127 4.127 22 C -0.112 4.112 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.147 0.853 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.269 0.731 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 11.978 0.089 12.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.159 4.159 3 C -0.114 4.114 4 C -0.051 4.051 5 H 0.120 0.880 6 C 0.249 3.751 7 O -0.443 6.443 8 O -0.115 6.115 9 C -0.460 4.460 10 H 0.111 0.889 11 C -0.160 4.160 12 N -0.503 5.503 13 Si 0.766 3.234 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.196 1.196 17 C -0.058 4.058 18 C -0.098 4.098 19 C -0.143 4.143 20 C -0.144 4.144 21 C -0.145 4.145 22 C -0.130 4.130 23 H 0.113 0.887 24 H 0.102 0.898 25 H 0.165 0.835 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.403 11.829 0.059 12.070 hybrid contribution 0.708 -0.694 -0.012 0.992 sum -1.694 11.134 0.047 11.263 Atomic orbital electron populations 1.23670 0.95877 1.00806 1.04638 1.23575 0.96226 0.99824 0.96306 1.20700 0.97092 0.96529 0.97119 1.19797 0.94490 0.89448 1.01406 0.88001 1.22908 0.88706 0.84609 0.78869 1.90577 1.20164 1.82895 1.50684 1.83890 1.38945 1.13885 1.74793 1.21173 0.88244 0.85344 1.51220 0.88904 1.25260 0.97628 0.96766 0.96345 1.69955 1.17138 1.16598 1.46574 0.85787 0.79714 0.78639 0.79300 1.19590 1.20422 1.19587 1.19427 0.97752 0.94185 0.94472 1.20975 0.95220 0.94985 0.98606 1.21079 1.00187 0.94767 0.98261 1.21061 0.99580 0.99707 0.94075 1.21005 0.98633 0.96279 0.98612 1.21013 1.00242 0.94633 0.97156 0.88687 0.89775 0.83541 0.90985 0.90709 0.92080 0.86164 0.86376 0.86581 0.86401 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.46 14.32 29.01 0.42 -3.04 16 2 C -0.14 -2.66 8.90 -36.03 -0.32 -2.98 16 3 C -0.08 -1.30 4.87 -27.88 -0.14 -1.44 16 4 C -0.03 -0.60 2.49 -92.93 -0.23 -0.83 16 5 H 0.10 1.80 7.88 -51.93 -0.41 1.39 16 6 C 0.40 9.85 7.05 36.00 0.25 10.11 16 7 O -0.55 -14.64 14.32 -19.06 -0.27 -14.91 16 8 O -0.21 -5.72 7.05 -20.72 -0.15 -5.87 16 9 C -0.38 -11.15 9.64 30.92 0.30 -10.85 16 10 H 0.09 2.75 6.86 -52.48 -0.36 2.39 16 11 C 0.04 1.22 5.49 -17.53 -0.10 1.12 16 12 N -0.87 -24.65 13.67 55.48 0.76 -23.89 16 13 Si 0.94 21.26 29.55 -169.99 -5.02 16.23 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 C -0.06 -1.01 4.40 -104.63 -0.46 -1.47 16 18 C -0.08 -1.35 7.97 -39.58 -0.32 -1.67 16 19 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 20 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 21 C -0.13 -1.69 10.05 -39.58 -0.40 -2.08 16 22 C -0.11 -1.69 9.67 -39.58 -0.38 -2.07 16 23 H 0.09 1.52 8.06 -52.49 -0.42 1.10 16 24 H 0.08 1.16 7.84 -52.49 -0.41 0.75 16 25 H 0.15 3.42 5.88 -52.49 -0.31 3.11 16 26 H 0.07 1.03 7.79 -51.93 -0.40 0.62 16 27 H 0.07 1.27 7.59 -51.93 -0.39 0.87 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.12 2.11 7.58 -52.49 -0.40 1.71 16 30 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 32 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 33 H 0.12 1.58 7.95 -52.49 -0.42 1.16 16 LS Contribution 290.76 15.07 4.38 4.38 Total: -1.00 -31.57 290.76 -6.40 -37.97 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -3.93 Total: 5.56 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -2.17 Total: -19.46 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.76 Total: -23.89 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.42 Total: -20.78 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.57 -6.40 -37.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778417697.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.160 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds