Wall clock time and date at job start Sun Mar 29 2020 22:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38333 * 120.86476 * 2 1 4 4 C 1.38351 * 119.33479 * 180.02562 * 3 2 1 5 5 N 1.31962 * 121.14240 * 0.02562 * 4 3 2 6 6 C 1.31634 * 121.90328 * 359.97438 * 5 4 3 7 7 C 1.39833 * 120.52630 * 0.02562 * 6 5 4 8 8 C 1.47207 * 120.58701 * 179.97438 * 7 6 5 9 9 C 1.34815 * 120.00243 * 310.70630 * 8 7 6 10 10 C 1.46426 * 119.99624 * 349.94891 * 9 8 7 11 11 O 1.21695 * 120.00177 * 353.28112 * 10 9 8 12 12 N 1.34772 * 119.99783 * 173.28592 * 10 9 8 13 13 C 1.46496 * 120.00163 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47615 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99615 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00467 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00210 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99795 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47235 * 90.00113 * 18 16 14 20 20 H 1.48502 * 109.47067 * 210.00004 * 18 16 14 21 21 H 1.48498 * 109.46970 * 329.99706 * 18 16 14 22 22 H 1.08994 * 109.47360 * 269.97476 * 1 2 3 23 23 H 1.08998 * 109.46935 * 29.98373 * 1 2 3 24 24 H 1.09000 * 109.46764 * 149.97913 * 1 2 3 25 25 H 1.07999 * 120.33225 * 359.97438 * 3 2 1 26 26 H 1.08004 * 119.42667 * 179.97438 * 4 3 2 27 27 H 1.08003 * 119.73589 * 180.27492 * 6 5 4 28 28 H 1.08007 * 120.00257 * 130.71018 * 8 7 6 29 29 H 1.07996 * 119.99877 * 169.94543 * 9 8 7 30 30 H 0.97005 * 119.99912 * 359.97438 * 12 10 9 31 31 H 1.08995 * 109.47373 * 300.00383 * 13 12 10 32 32 H 1.09008 * 109.47051 * 60.00085 * 13 12 10 33 33 H 0.97000 * 120.00091 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1874 0.0000 4 6 3.5997 1.1505 -0.0005 5 7 4.2517 0.0032 -0.0016 6 6 3.6239 -1.1538 -0.0016 7 6 2.2265 -1.2036 -0.0011 8 6 1.5231 -2.4967 -0.0017 9 6 1.8695 -3.4521 -0.8876 10 6 2.7844 -3.1350 -1.9859 11 8 3.1356 -1.9849 -2.1725 12 7 3.2374 -4.1169 -2.7904 13 6 4.1523 -3.7996 -3.8896 14 6 4.5057 -5.0637 -4.6299 15 1 4.0900 -6.0090 -4.3135 16 6 5.3589 -5.0136 -5.7118 17 7 5.6677 -6.1168 -6.3575 18 14 6.0773 -3.3786 -6.2596 19 1 7.3608 -3.1399 -5.5518 20 1 6.3183 -3.4097 -7.7246 21 1 5.1240 -2.2864 -5.9379 22 1 -0.3634 -0.0005 1.0276 23 1 -0.3633 0.8901 -0.5136 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6963 2.1338 -0.0004 26 1 4.1552 2.0767 -0.0010 27 1 4.1927 -2.0719 0.0020 28 1 0.7294 -2.6801 0.7075 29 1 1.4722 -4.4513 -0.7870 30 1 2.9576 -5.0337 -2.6414 31 1 3.6705 -3.1005 -4.5731 32 1 5.0598 -3.3483 -3.4883 33 1 6.2676 -6.0815 -7.1189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787620987.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:42 Heat of formation + Delta-G solvation = -10.692128 kcal Electronic energy + Delta-G solvation = -17041.124306 eV Core-core repulsion = 14259.147698 eV Total energy + Delta-G solvation = -2781.976608 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.37003 -40.18554 -36.35178 -35.49917 -34.42624 -34.03924 -31.25603 -29.85563 -28.49171 -25.75343 -24.20715 -22.97287 -22.38727 -20.78665 -19.03427 -18.00539 -17.47453 -17.26563 -16.97032 -16.24590 -16.03603 -15.47093 -15.28410 -14.78708 -14.53205 -14.28094 -14.13014 -13.81415 -13.56673 -13.52207 -13.34873 -13.04159 -12.75622 -12.26424 -11.98147 -11.68607 -11.15629 -10.95310 -10.90708 -10.28843 -10.22208 -9.82038 -9.26507 -8.43503 -6.49886 -0.24656 0.44521 0.80710 1.28048 1.30418 1.42796 2.24000 2.40076 2.57478 2.92207 2.95150 3.59024 3.78635 3.90268 3.95679 4.00995 4.27957 4.53516 4.63505 4.65570 4.75453 4.83656 4.90025 4.99258 5.03817 5.11170 5.22617 5.24979 5.41553 5.49429 5.52456 5.89865 6.07829 6.51382 6.87553 7.13490 7.14696 7.44366 8.71332 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.030993 B = 0.005571 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.212626 B = 5025.176118 C = 5552.563256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.039 4.039 3 C -0.185 4.185 4 C 0.081 3.919 5 N -0.534 5.534 6 C 0.148 3.852 7 C -0.124 4.124 8 C -0.016 4.016 9 C -0.201 4.201 10 C 0.516 3.484 11 O -0.586 6.586 12 N -0.700 5.700 13 C 0.235 3.765 14 C -0.546 4.546 15 H 0.062 0.938 16 C 0.030 3.970 17 N -0.929 5.929 18 Si 0.934 3.066 19 H -0.267 1.267 20 H -0.270 1.270 21 H -0.266 1.266 22 H 0.101 0.899 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.163 0.837 26 H 0.170 0.830 27 H 0.126 0.874 28 H 0.185 0.815 29 H 0.173 0.827 30 H 0.409 0.591 31 H 0.008 0.992 32 H 0.006 0.994 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.853 11.076 15.965 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.047 4.047 3 C -0.204 4.204 4 C -0.073 4.073 5 N -0.244 5.244 6 C -0.010 4.010 7 C -0.126 4.126 8 C -0.036 4.036 9 C -0.221 4.221 10 C 0.306 3.694 11 O -0.469 6.469 12 N -0.349 5.349 13 C 0.111 3.889 14 C -0.584 4.584 15 H 0.080 0.920 16 C -0.171 4.171 17 N -0.568 5.568 18 Si 0.758 3.242 19 H -0.192 1.192 20 H -0.194 1.194 21 H -0.191 1.191 22 H 0.120 0.880 23 H 0.100 0.900 24 H 0.091 0.909 25 H 0.181 0.819 26 H 0.188 0.812 27 H 0.143 0.857 28 H 0.202 0.798 29 H 0.191 0.809 30 H 0.245 0.755 31 H 0.026 0.974 32 H 0.024 0.976 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.570 11.794 15.632 22.745 hybrid contribution 0.056 -0.167 -0.863 0.881 sum -11.515 11.626 14.769 22.043 Atomic orbital electron populations 1.20889 0.87548 1.04038 1.04296 1.20839 0.98305 0.91602 0.93947 1.22203 0.95033 0.99731 1.03474 1.23164 0.93053 0.96078 0.95052 1.67468 1.42568 0.99514 1.14870 1.22603 0.91632 0.95164 0.91648 1.20036 0.94101 0.95229 1.03240 1.22573 0.95541 0.89191 0.96291 1.23227 1.01082 1.02330 0.95449 1.19376 0.81394 0.84779 0.83838 1.90818 1.60797 1.21463 1.73820 1.46019 1.46893 1.11145 1.30854 1.19007 0.88735 0.95546 0.85573 1.21301 1.29264 0.93729 1.14108 0.91995 1.25535 0.95958 0.99686 0.95892 1.69967 1.36307 1.29036 1.21468 0.85910 0.79570 0.80353 0.78333 1.19229 1.19446 1.19069 0.88016 0.89991 0.90855 0.81906 0.81246 0.85656 0.79823 0.80935 0.75513 0.97407 0.97643 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.69 71.24 0.69 -0.89 16 2 C -0.04 -0.91 5.96 -19.36 -0.12 -1.03 16 3 C -0.18 -4.23 9.80 22.32 0.22 -4.01 16 4 C 0.08 2.27 11.17 84.70 0.95 3.21 16 5 N -0.53 -19.01 10.34 -194.51 -2.01 -21.02 16 6 C 0.15 5.10 7.95 85.11 0.68 5.77 16 7 C -0.12 -3.43 4.33 -20.05 -0.09 -3.52 16 8 C -0.02 -0.33 8.43 23.84 0.20 -0.13 16 9 C -0.20 -4.85 9.96 23.62 0.24 -4.61 16 10 C 0.52 19.20 7.02 86.38 0.61 19.81 16 11 O -0.59 -26.35 12.43 -4.33 -0.05 -26.40 16 12 N -0.70 -28.41 5.54 -471.10 -2.61 -31.03 16 13 C 0.24 11.93 4.50 85.63 0.38 12.32 16 14 C -0.55 -30.75 9.83 25.60 0.25 -30.50 16 15 H 0.06 3.62 7.84 -2.91 -0.02 3.60 16 16 C 0.03 1.72 5.47 84.65 0.46 2.19 16 17 N -0.93 -56.16 13.96 21.44 0.30 -55.86 16 18 Si 0.93 45.62 27.47 68.60 1.88 47.50 16 19 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.27 -13.10 6.54 99.48 0.65 -12.44 16 22 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.08 1.00 8.10 -2.39 -0.02 0.98 16 24 H 0.07 1.04 7.19 -2.39 -0.02 1.02 16 25 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 26 H 0.17 3.66 8.06 -2.91 -0.02 3.63 16 27 H 0.13 4.55 7.53 -2.91 -0.02 4.53 16 28 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 29 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.41 14.32 8.30 -92.70 -0.77 13.55 16 31 H 0.01 0.43 7.20 -2.39 -0.02 0.41 16 32 H 0.01 0.30 7.57 -2.38 -0.02 0.29 16 33 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -76.10 287.02 2.27 -73.82 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.29 Total: 14.38 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 4.47 Total: -1.40 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -4.32 Total: -107.90 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.50 kcal Total: -76.10 2.27 -73.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787620987.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.131 kcal (2) G-P(sol) polarization free energy of solvation -76.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds