Wall clock time and date at job start Sun Mar 29 2020 22:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38330 * 120.86743 * 2 1 4 4 C 1.38344 * 119.33756 * 180.25828 * 3 2 1 5 5 N 1.31978 * 121.13853 * 359.77010 * 4 3 2 6 6 C 1.31626 * 121.90372 * 359.97438 * 5 4 3 7 7 C 1.39835 * 120.52891 * 359.97438 * 6 5 4 8 8 C 1.47206 * 120.59343 * 180.02562 * 7 6 5 9 9 C 1.34816 * 119.99413 * 359.97438 * 8 7 6 10 10 C 1.46426 * 119.99568 * 179.97438 * 9 8 7 11 11 O 1.21695 * 120.00379 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99575 * 180.02562 * 10 9 8 13 13 C 1.46506 * 120.00072 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47289 * 179.97438 * 13 12 10 15 15 H 1.07994 * 119.99399 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00144 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99733 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47181 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46716 * 120.00463 * 18 16 14 21 21 H 1.48500 * 109.46999 * 240.00161 * 18 16 14 22 22 H 1.09000 * 109.47079 * 270.23752 * 1 2 3 23 23 H 1.08997 * 109.47210 * 30.24312 * 1 2 3 24 24 H 1.09006 * 109.47058 * 150.24137 * 1 2 3 25 25 H 1.07998 * 120.33130 * 0.02562 * 3 2 1 26 26 H 1.07995 * 119.43226 * 179.74674 * 4 3 2 27 27 H 1.07997 * 119.73705 * 180.02562 * 6 5 4 28 28 H 1.08000 * 120.00708 * 180.02562 * 8 7 6 29 29 H 1.08000 * 119.99879 * 0.02562 * 9 8 7 30 30 H 0.97001 * 120.00676 * 359.97438 * 12 10 9 31 31 H 1.09001 * 109.47060 * 300.00359 * 13 12 10 32 32 H 1.09004 * 109.47073 * 59.99848 * 13 12 10 33 33 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1874 0.0000 4 6 3.5997 1.1504 -0.0054 5 7 4.2517 0.0030 -0.0061 6 6 3.6239 -1.1539 -0.0011 7 6 2.2265 -1.2037 0.0056 8 6 1.5229 -2.4967 0.0117 9 6 2.2264 -3.6468 0.0104 10 6 1.5266 -4.9330 0.0170 11 8 0.3101 -4.9638 0.0233 12 7 2.2299 -6.0827 0.0161 13 6 1.5299 -7.3696 0.0222 14 6 2.5379 -8.4899 0.0192 15 1 3.5943 -8.2656 0.0138 16 6 2.1114 -9.8010 0.0245 17 7 0.8249 -10.0740 0.0316 18 14 3.3609 -11.1896 0.0201 19 1 4.7326 -10.6211 0.0114 20 1 3.1786 -12.0233 1.2354 21 1 3.1645 -12.0283 -1.1896 22 1 -0.3633 0.0043 1.0277 23 1 -0.3633 0.8878 -0.5176 24 1 -0.3633 -0.8922 -0.5101 25 1 1.6964 2.1337 0.0004 26 1 4.1553 2.0765 -0.0096 27 1 4.1927 -2.0720 -0.0014 28 1 0.4433 -2.5242 0.0165 29 1 3.3061 -3.6194 0.0052 30 1 3.1996 -6.0582 0.0107 31 1 0.9090 -7.4413 0.9153 32 1 0.9006 -7.4452 -0.8646 33 1 0.5249 -10.9964 0.0350 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787620988.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:44 Heat of formation + Delta-G solvation = -0.001834 kcal Electronic energy + Delta-G solvation = -16200.049457 eV Core-core repulsion = 13418.536415 eV Total energy + Delta-G solvation = -2781.513043 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.43699 -38.79099 -34.96608 -34.19008 -33.50957 -32.32985 -30.11759 -28.07550 -27.27693 -24.80902 -23.00659 -22.12679 -20.75557 -19.33140 -17.63911 -16.73627 -16.35477 -15.82061 -15.31136 -14.89214 -14.57941 -14.26308 -14.22449 -13.97933 -13.22141 -13.09224 -12.92530 -12.66096 -12.02782 -11.90328 -11.88484 -11.60334 -10.95753 -10.94329 -10.66577 -10.33103 -9.64897 -9.61942 -9.39876 -9.21380 -8.76004 -8.48521 -7.87637 -6.17996 -4.24932 0.36752 1.01166 2.01877 3.23277 3.30430 3.33614 3.60348 3.95783 4.00053 4.22639 4.35238 4.45578 4.49852 4.71347 4.81981 5.08219 5.18416 5.20519 5.28190 5.35141 5.53105 5.60102 5.67494 5.81722 5.98773 6.36024 6.40180 6.51574 7.29233 7.39352 7.49316 7.65516 7.75636 7.95091 8.59138 8.75643 9.05345 9.41734 10.92308 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046155 B = 0.003657 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.506065 B = 7654.955370 C = 8241.007947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.026 4.026 3 C -0.176 4.176 4 C 0.099 3.901 5 N -0.489 5.489 6 C 0.115 3.885 7 C -0.113 4.113 8 C -0.052 4.052 9 C -0.177 4.177 10 C 0.525 3.475 11 O -0.559 6.559 12 N -0.703 5.703 13 C 0.247 3.753 14 C -0.544 4.544 15 H 0.064 0.936 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.155 0.845 27 H 0.161 0.839 28 H 0.139 0.861 29 H 0.126 0.874 30 H 0.392 0.608 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 20.946 -0.055 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.034 4.034 3 C -0.196 4.196 4 C -0.057 4.057 5 N -0.197 5.197 6 C -0.043 4.043 7 C -0.115 4.115 8 C -0.073 4.073 9 C -0.198 4.198 10 C 0.312 3.688 11 O -0.441 6.441 12 N -0.350 5.350 13 C 0.127 3.873 14 C -0.582 4.582 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.100 0.900 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.153 0.847 26 H 0.172 0.828 27 H 0.178 0.822 28 H 0.157 0.843 29 H 0.143 0.857 30 H 0.225 0.775 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.492 20.719 -0.055 21.011 hybrid contribution 0.223 -0.824 0.008 0.854 sum 3.714 19.895 -0.047 20.238 Atomic orbital electron populations 1.20928 0.89914 1.03857 1.03381 1.20549 0.96913 0.92117 0.93801 1.21969 0.95592 0.98532 1.03487 1.22832 0.91715 0.96360 0.94791 1.67645 1.41097 0.98413 1.12548 1.23161 0.90919 0.96353 0.93861 1.19977 0.94606 0.93635 1.03287 1.22144 1.00518 0.89512 0.95090 1.23268 1.00297 0.93237 1.02965 1.18259 0.87540 0.84607 0.78423 1.90768 1.13648 1.88016 1.51636 1.46415 1.10133 1.07272 1.71144 1.19158 0.92959 0.77327 0.97886 1.21265 0.92978 0.90780 1.53163 0.91765 1.24959 0.95526 0.98902 0.94663 1.69985 1.13549 1.19801 1.48956 0.86348 0.81091 0.81651 0.77756 1.19592 1.20789 1.20781 0.90044 0.90838 0.90144 0.84652 0.82770 0.82177 0.84305 0.85665 0.77483 0.95336 0.95343 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.60 36.01 0.35 -0.66 16 2 C -0.03 -0.26 5.96 -103.84 -0.62 -0.88 16 3 C -0.18 -1.52 9.80 -39.51 -0.39 -1.91 16 4 C 0.10 0.94 11.17 -17.45 -0.19 0.74 16 5 N -0.49 -5.81 10.34 -12.84 -0.13 -5.95 16 6 C 0.11 1.34 10.59 -17.04 -0.18 1.16 16 7 C -0.11 -1.33 5.88 -104.91 -0.62 -1.95 16 8 C -0.05 -0.70 8.94 -37.15 -0.33 -1.03 16 9 C -0.18 -2.59 9.42 -37.50 -0.35 -2.95 16 10 C 0.52 10.56 7.74 -12.97 -0.10 10.46 16 11 O -0.56 -13.43 16.23 5.19 0.08 -13.35 16 12 N -0.70 -14.84 5.54 -62.88 -0.35 -15.19 16 13 C 0.25 6.56 5.43 -5.19 -0.03 6.54 16 14 C -0.54 -14.74 9.28 -34.44 -0.32 -15.06 16 15 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 18 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 24 H 0.08 0.71 6.46 -51.93 -0.34 0.38 16 25 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 26 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 27 H 0.16 1.61 6.19 -52.49 -0.32 1.28 16 28 H 0.14 1.94 5.95 -52.49 -0.31 1.63 16 29 H 0.13 1.44 6.10 -52.49 -0.32 1.12 16 30 H 0.39 7.03 8.30 -40.82 -0.34 6.69 16 31 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 293.09 15.07 4.42 4.42 Total: -1.00 -33.11 293.09 -6.85 -39.96 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -3.70 Total: 3.51 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -2.88 Total: -3.89 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.26 Total: -46.46 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.11 -6.85 -39.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787620988.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.960 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds